CmaCh18G012970 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: CDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGACTTCAGCGGTTGAAACCCAAACAGTACTAAACCCAAATCCCTCCATAGCCATCCTCATTCACAGCTCTCAATTTTCTTCTTCTTTTTCTTGTTTTTCTGTCTTTCTCTAGGTTCCATCGAGGAAGAAAGGGCATTTTGGATTGAACAGAGAGGCAGAGATGGCTGCTTTGAGGGCTTGTTTTGGACTCTATGCCGTGATTATTGCTATCTTTTATGTTGTCATGTTGCCTGTATCTCGAGCTGAGCATGCCTCTTCTCCAGCTCCGGCTCCGGCTCCCACTAGCGATGGTTAGTTCGCTTTATCCTTGGTAGTTTTTTCTGTTTGTTTATTGAGAAACTTGCTGGGAAAATGACTGGATATCAAAAAATGGCTTTAGAATCAACTCTTCTCTTCTCTTCTCTTCAAACTCCATGTTCTAACCAGTACCAATTCAATTGGATCTCCTTGAATTGGAAATGGGTTTCGGGAAACGTGTCTCCTTGTTTGAATTGAAACAAAATCCACTCTTTTCTCCCACAAAAACCTTCCTTTTGTAGACATTTTCTGTTTGTTTCTTGAAAAATTTACAGGGGAGAGATGACAGGAAATCCGAGAATGGTTTCGAAACCAACTCTCATTTTCAAAAACAGCTAAATCTGCTTAAATTGAAAATGGGTTTCTGGTATTTGAAGAGAAGAGTTATTGGGTTTTGAAAATGAATCTCCCTAAATTGAGAAAGGATTTGAATGGATTTGATTATGTTGCAGGCACCGCAATAGACCAAGGCATAGCATACATTCTAATGCTGCTGGCTTTAGCGCTCACTTATATCATCCATTGATGCAACTTCCAAAAGCACCAAAAACAGAAGAAGCTCCAATTATGTGTATGAGATGATGGGAGGAGGGCGTGGTGTTTCAAATGCCTTTTACCTTTTTTTTTGAAAGATTGGCAGAGATTTCATTTGTAGAAAGTCAGTTGTATTATTATATATTTATCATTCTTTTTCTTGAGTGATCATTATGTTCATTTGGGTATCATAAATCTCCAAAATCAGCCACTCTCTTTAATTGTCTTATAAATCAATATATTATGTCTGGAAATA ATGACTTCAGCGGTTGAAACCCAAACAGTTCCATCGAGGAAGAAAGGGCATTTTGGATTGAACAGAGAGGCAGAGATGGCTGCTTTGAGGGCTTGTTTTGGACTCTATGCCGTGATTATTGCTATCTTTTATGTTGTCATGTTGCCTGTATCTCGAGCTGAGCATGCCTCTTCTCCAGCTCCGGCTCCGGCTCCCACTAGCGATGGCACCGCAATAGACCAAGGCATAGCATACATTCTAATGCTGCTGGCTTTAGCGCTCACTTATATCATCCATTGATGCAACTTCCAAAAGCACCAAAAACAGAAGAAGCTCCAATTATGTGTATGAGATGATGGGAGGAGGGCGTGGTGTTTCAAATGCCTTTTACCTTTTTTTTTGAAAGATTGGCAGAGATTTCATTTGTAGAAAGTCAGTTGTATTATTATATATTTATCATTCTTTTTCTTGAGTGATCATTATGTTCATTTGGGTATCATAAATCTCCAAAATCAGCCACTCTCTTTAATTGTCTTATAAATCAATATATTATGTCTGGAAATA ATGACTTCAGCGGTTGAAACCCAAACAGTTCCATCGAGGAAGAAAGGGCATTTTGGATTGAACAGAGAGGCAGAGATGGCTGCTTTGAGGGCTTGTTTTGGACTCTATGCCGTGATTATTGCTATCTTTTATGTTGTCATGTTGCCTGTATCTCGAGCTGAGCATGCCTCTTCTCCAGCTCCGGCTCCGGCTCCCACTAGCGATGGCACCGCAATAGACCAAGGCATAGCATACATTCTAATGCTGCTGGCTTTAGCGCTCACTTATATCATCCATTGA MTSAVETQTVPSRKKGHFGLNREAEMAALRACFGLYAVIIAIFYVVMLPVSRAEHASSPAPAPAPTSDGTAIDQGIAYILMLLALALTYIIH
BLAST of CmaCh18G012970 vs. Swiss-Prot
Match: AGP22_ARATH (Arabinogalactan peptide 22 OS=Arabidopsis thaliana GN=AGP22 PE=3 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 1.6e-10 Identity = 39/67 (58.21%), Postives = 54/67 (80.60%), Query Frame = 1
BLAST of CmaCh18G012970 vs. Swiss-Prot
Match: AGP20_ARATH (Arabinogalactan peptide 20 OS=Arabidopsis thaliana GN=AGP20 PE=3 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 1.8e-09 Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 1
BLAST of CmaCh18G012970 vs. Swiss-Prot
Match: AGP16_ARATH (Arabinogalactan peptide 16 OS=Arabidopsis thaliana GN=AGP16 PE=1 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 1.1e-08 Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = 1
BLAST of CmaCh18G012970 vs. TrEMBL
Match: A0A0A0L7T5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G355060 PE=4 SV=1) HSP 1 Score: 93.2 bits (230), Expect = 1.8e-16 Identity = 53/70 (75.71%), Postives = 62/70 (88.57%), Query Frame = 1
BLAST of CmaCh18G012970 vs. TrEMBL
Match: C6SV73_SOYBN (Uncharacterized protein OS=Glycine max PE=2 SV=1) HSP 1 Score: 74.7 bits (182), Expect = 6.5e-11 Identity = 42/70 (60.00%), Postives = 55/70 (78.57%), Query Frame = 1
BLAST of CmaCh18G012970 vs. TrEMBL
Match: A0A0B2RPP5_GLYSO (Arabinogalactan peptide 22 OS=Glycine soja GN=glysoja_004831 PE=4 SV=1) HSP 1 Score: 73.6 bits (179), Expect = 1.5e-10 Identity = 42/70 (60.00%), Postives = 54/70 (77.14%), Query Frame = 1
BLAST of CmaCh18G012970 vs. TrEMBL
Match: A9PBL3_POPTR (Arabinogalactan-protein OS=Populus trichocarpa GN=POPTR_0014s09050g PE=2 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 3.2e-10 Identity = 37/65 (56.92%), Postives = 50/65 (76.92%), Query Frame = 1
BLAST of CmaCh18G012970 vs. TrEMBL
Match: Q8L9T8_ARATH (Arabinogalactan protein 41 OS=Arabidopsis thaliana GN=AGP41 PE=2 SV=1) HSP 1 Score: 72.0 bits (175), Expect = 4.2e-10 Identity = 39/67 (58.21%), Postives = 52/67 (77.61%), Query Frame = 1
BLAST of CmaCh18G012970 vs. TAIR10
Match: AT5G24105.1 (AT5G24105.1 arabinogalactan protein 41) HSP 1 Score: 72.0 bits (175), Expect = 2.1e-13 Identity = 39/67 (58.21%), Postives = 52/67 (77.61%), Query Frame = 1
BLAST of CmaCh18G012970 vs. TAIR10
Match: AT5G53250.1 (AT5G53250.1 arabinogalactan protein 22) HSP 1 Score: 66.6 bits (161), Expect = 9.0e-12 Identity = 39/67 (58.21%), Postives = 54/67 (80.60%), Query Frame = 1
BLAST of CmaCh18G012970 vs. TAIR10
Match: AT3G61640.1 (AT3G61640.1 arabinogalactan protein 20) HSP 1 Score: 63.2 bits (152), Expect = 9.9e-11 Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 1
BLAST of CmaCh18G012970 vs. TAIR10
Match: AT2G46330.1 (AT2G46330.1 arabinogalactan protein 16) HSP 1 Score: 60.5 bits (145), Expect = 6.4e-10 Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = 1
BLAST of CmaCh18G012970 vs. NCBI nr
Match: gi|700202730|gb|KGN57863.1| (hypothetical protein Csa_3G355060 [Cucumis sativus]) HSP 1 Score: 93.2 bits (230), Expect = 2.5e-16 Identity = 53/70 (75.71%), Postives = 62/70 (88.57%), Query Frame = 1
BLAST of CmaCh18G012970 vs. NCBI nr
Match: gi|659130864|ref|XP_008465391.1| (PREDICTED: arabinogalactan peptide 22 [Cucumis melo]) HSP 1 Score: 84.3 bits (207), Expect = 1.2e-13 Identity = 50/69 (72.46%), Postives = 58/69 (84.06%), Query Frame = 1
BLAST of CmaCh18G012970 vs. NCBI nr
Match: gi|255625603|gb|ACU13146.1| (unknown [Glycine max]) HSP 1 Score: 74.7 bits (182), Expect = 9.3e-11 Identity = 42/70 (60.00%), Postives = 55/70 (78.57%), Query Frame = 1
BLAST of CmaCh18G012970 vs. NCBI nr
Match: gi|645258212|ref|XP_008234783.1| (PREDICTED: arabinogalactan peptide 20-like [Prunus mume]) HSP 1 Score: 73.6 bits (179), Expect = 2.1e-10 Identity = 40/68 (58.82%), Postives = 55/68 (80.88%), Query Frame = 1
BLAST of CmaCh18G012970 vs. NCBI nr
Match: gi|734408958|gb|KHN35065.1| (Arabinogalactan peptide 22 [Glycine soja]) HSP 1 Score: 73.6 bits (179), Expect = 2.1e-10 Identity = 42/70 (60.00%), Postives = 54/70 (77.14%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |