CmoCh18G013260 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: CDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTGTTTTGAGGGCTTGTTTTGGAATCTATGCTGTGATTATTGCTATCTTTTATGTTGTCATGTTGCCTGTATCTCGAGCTGAGCATGCCTCTTCTCCAGCTCCGGCTCCCACTAGCGATGGTTAGTTCCCTTTATCCTTGTTAGTTTTTTCTGTTTGTTTCTTGAGAAACTTGCTGGGAAAATGACTGGATATCAAAAAATGGCTTTAGAATCAACTCTTCTCTTCTCTTCTCTTCAAAATCCATGTTCTAACCAGTACCAATTCAATTGGATCTCCTTGAATTGGAAATGGGTTTTGGGGAATGTGTCTCCTTGTTTGAATTGAAACAAAATCCACTCTTTTCTCCCACAAAAACCTGCCTTTTGTAGACATTTTCTGTTTGATTCTTGAAAATTTTACAGGGGAGAGATGACTGGAAATCCGAGAATGGTTTTGAAACCAACTCTCATCTTCAAAAACAGCTAAATCTGCTTAAATTGAAAATGGGTTTCTGGTATTTGAAGAGAAGAGTTATTGCGTTCTGAAAATGAATCTCCCTAAATTGAGAAAGGATTTGATTATGTTGCAGGCACCGCAATAGACCAAGGCATAGCATACATTCTAATGCTGCTGGCTTTAGCGCTCACTTATATCATCCATTGATGCAACCTCCAAAAGCACCAAAAACAGAAGAAGCTCCAATTATGTGTATGAGATGAAGGGAGGAGGGCGTGGTGTTTCAAATGCCTTTTACCTTTTTTTTTTTTCTTCTTTTTTTTGAAAGATTGGCAGAGATTTCATTTGTAGAAAGTCAGTTGTATTATTATATATTTATCATTCTTTTTCTTGAGTGATCATTATATTCATTTGGGTATATCATAACTCTCCAAAATCAG ATGGCTGTTTTGAGGGCTTGTTTTGGAATCTATGCTGTGATTATTGCTATCTTTTATGTTGTCATGTTGCCTGTATCTCGAGCTGAGCATGCCTCTTCTCCAGCTCCGGCTCCCACTAGCGATGGCACCGCAATAGACCAAGGCATAGCATACATTCTAATGCTGCTGGCTTTAGCGCTCACTTATATCATCCATTGATGCAACCTCCAAAAGCACCAAAAACAGAAGAAGCTCCAATTATGTGTATGAGATGAAGGGAGGAGGGCGTGGTGTTTCAAATGCCTTTTACCTTTTTTTTTTTTCTTCTTTTTTTTGAAAGATTGGCAGAGATTTCATTTGTAGAAAGTCAGTTGTATTATTATATATTTATCATTCTTTTTCTTGAGTGATCATTATATTCATTTGGGTATATCATAACTCTCCAAAATCAG ATGGCTGTTTTGAGGGCTTGTTTTGGAATCTATGCTGTGATTATTGCTATCTTTTATGTTGTCATGTTGCCTGTATCTCGAGCTGAGCATGCCTCTTCTCCAGCTCCGGCTCCCACTAGCGATGGCACCGCAATAGACCAAGGCATAGCATACATTCTAATGCTGCTGGCTTTAGCGCTCACTTATATCATCCATTGA
BLAST of CmoCh18G013260 vs. Swiss-Prot
Match: AGP22_ARATH (Arabinogalactan peptide 22 OS=Arabidopsis thaliana GN=AGP22 PE=3 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 1.3e-11 Identity = 40/65 (61.54%), Postives = 53/65 (81.54%), Query Frame = 1
BLAST of CmoCh18G013260 vs. Swiss-Prot
Match: AGP16_ARATH (Arabinogalactan peptide 16 OS=Arabidopsis thaliana GN=AGP16 PE=1 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 6.8e-08 Identity = 29/52 (55.77%), Postives = 43/52 (82.69%), Query Frame = 1
BLAST of CmoCh18G013260 vs. Swiss-Prot
Match: AGP20_ARATH (Arabinogalactan peptide 20 OS=Arabidopsis thaliana GN=AGP20 PE=3 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 6.8e-08 Identity = 29/52 (55.77%), Postives = 42/52 (80.77%), Query Frame = 1
BLAST of CmoCh18G013260 vs. TrEMBL
Match: A0A0A0L7T5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G355060 PE=4 SV=1) HSP 1 Score: 88.6 bits (218), Expect = 3.1e-15 Identity = 53/70 (75.71%), Postives = 61/70 (87.14%), Query Frame = 1
BLAST of CmoCh18G013260 vs. TrEMBL
Match: B9RIM3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1580600 PE=4 SV=1) HSP 1 Score: 72.8 bits (177), Expect = 1.7e-10 Identity = 40/65 (61.54%), Postives = 51/65 (78.46%), Query Frame = 1
BLAST of CmoCh18G013260 vs. TrEMBL
Match: A0A0A0KZS8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G051380 PE=4 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 5.1e-10 Identity = 39/65 (60.00%), Postives = 52/65 (80.00%), Query Frame = 1
BLAST of CmoCh18G013260 vs. TrEMBL
Match: B9I537_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s01350g PE=4 SV=1) HSP 1 Score: 70.5 bits (171), Expect = 8.7e-10 Identity = 36/65 (55.38%), Postives = 51/65 (78.46%), Query Frame = 1
BLAST of CmoCh18G013260 vs. TrEMBL
Match: A0A067JZA6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20491 PE=4 SV=1) HSP 1 Score: 70.1 bits (170), Expect = 1.1e-09 Identity = 37/65 (56.92%), Postives = 51/65 (78.46%), Query Frame = 1
BLAST of CmoCh18G013260 vs. TAIR10
Match: AT5G53250.1 (AT5G53250.1 arabinogalactan protein 22) HSP 1 Score: 69.7 bits (169), Expect = 7.5e-13 Identity = 40/65 (61.54%), Postives = 53/65 (81.54%), Query Frame = 1
BLAST of CmoCh18G013260 vs. TAIR10
Match: AT5G24105.1 (AT5G24105.1 arabinogalactan protein 41) HSP 1 Score: 68.2 bits (165), Expect = 2.2e-12 Identity = 37/65 (56.92%), Postives = 52/65 (80.00%), Query Frame = 1
BLAST of CmoCh18G013260 vs. TAIR10
Match: AT2G46330.1 (AT2G46330.1 arabinogalactan protein 16) HSP 1 Score: 57.4 bits (137), Expect = 3.8e-09 Identity = 29/52 (55.77%), Postives = 43/52 (82.69%), Query Frame = 1
BLAST of CmoCh18G013260 vs. TAIR10
Match: AT3G61640.1 (AT3G61640.1 arabinogalactan protein 20) HSP 1 Score: 57.4 bits (137), Expect = 3.8e-09 Identity = 29/52 (55.77%), Postives = 42/52 (80.77%), Query Frame = 1
BLAST of CmoCh18G013260 vs. NCBI nr
Match: gi|659130864|ref|XP_008465391.1| (PREDICTED: arabinogalactan peptide 22 [Cucumis melo]) HSP 1 Score: 91.7 bits (226), Expect = 5.2e-16 Identity = 53/67 (79.10%), Postives = 59/67 (88.06%), Query Frame = 1
BLAST of CmoCh18G013260 vs. NCBI nr
Match: gi|700202730|gb|KGN57863.1| (hypothetical protein Csa_3G355060 [Cucumis sativus]) HSP 1 Score: 88.6 bits (218), Expect = 4.4e-15 Identity = 53/70 (75.71%), Postives = 61/70 (87.14%), Query Frame = 1
BLAST of CmoCh18G013260 vs. NCBI nr
Match: gi|255545062|ref|XP_002513592.1| (PREDICTED: arabinogalactan peptide 20 [Ricinus communis]) HSP 1 Score: 72.8 bits (177), Expect = 2.5e-10 Identity = 40/65 (61.54%), Postives = 51/65 (78.46%), Query Frame = 1
BLAST of CmoCh18G013260 vs. NCBI nr
Match: gi|645258212|ref|XP_008234783.1| (PREDICTED: arabinogalactan peptide 20-like [Prunus mume]) HSP 1 Score: 72.0 bits (175), Expect = 4.3e-10 Identity = 40/67 (59.70%), Postives = 55/67 (82.09%), Query Frame = 1
BLAST of CmoCh18G013260 vs. NCBI nr
Match: gi|449464078|ref|XP_004149756.1| (PREDICTED: arabinogalactan peptide 22-like [Cucumis sativus]) HSP 1 Score: 71.2 bits (173), Expect = 7.3e-10 Identity = 39/65 (60.00%), Postives = 52/65 (80.00%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |