CSPI01G15930 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G15930
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Mitochondrial import inner membrane translocase subunit tim16
Location	Chr1 : 11434446 .. 11438415 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAAGTCTACCTTGAATGCACTGTATGAATTCTTGAAATGAAGATGAGCATGAAACGAATACATCAACCACACGGTAGTCAATATATCGAGAAGATTCCACCCATCTACCGTAAAAAATAGTCCGCACACGTTGTATTGCCATTAGAAGACACAGTAGAGGATAAAGGTAAAGGAATTCCGTGAAAGAATACAACAGATGATACAATCAAACAAAAAAGTCGAAAGCTGCCGTGAAAGAATTATAAAACAGCAGTACGATAAATGCTAAATTATTTAGTGAACTGAAAATAAATCCATCCAAATAGTGTTGTACCTCACAATAAAAGTGTGATTAAAAAACTATGGAGAGTAATTGGTACAACTAAATAATTTCAGATAAAAATCATATTATTCTCACGGTTTTTTTGGGAAGTATTGACATTTGAATCGATGGTTTTAAATCAAACTTTAAAACCAACTTTGAAATAATAGTAAATAATATCTATGGAAAATATACCTTATGAAACGATAGTTCCATAAAAGGATTTTATTCCTCTAATTTAGATGCATTTACTGTTTGTATCATTAGTTTAATTAAATTTTATCATACATACATATGGTTTTATTAACATTTATTCTCCTTAAATAATAATGCCAATTTATTGTTCTTCATATCGCGAATCGAATAATTGTTACATGCATAATTACATACACTTTTAATAATTAATGTTAAATATGAAAATTTGTGAATTAAATAGCTATTATTATATGTATATTTGAATAAAAATACGTTATGAAGCATTTGATTTGATTTGAAGCCATTATTCGATAATATGTTTAAATTGAAACCAGGAATCTAGCGTGAATTGGTTAAATGAGATCAATCCAAAAAATAAATATTTATTTAATATTATTATAAAACTAAATTATATGCAAATATTTCATTACGAGACCAAGGGTAAAATCGGTTGAAAAATAGTGACGGGCTAAAAATCAAATTATTTTAAAGATTTGGTATAGGGGAGATTGTAGTCCATTATTTTACCTTTCTCATGTTATTACCACACTAAAAATGGTCTTCTTTGTTTCTTACATGAAAGAAAGGGAAGCCCTAGGCCCAACAATTTTGGTTCTTTTCCACCATTGTTTTCTCTGTTTCTCCCTCTGGCAGCCATTCCCATACCCAAACTCCCTCACCTATCATATTTCATTTCTTCTCCTTCTCCATTGCTGCCTAAAAGCTCCATCCCAAGGTCTGTCCTATTTTTCTTCGCTTTCTTACGTTTTTATTGTTATTACTATTTTTTATTCTTTACATTCCTCTTTCTCCATTATTCTTCCCCATCTTTCTTCCTTAGCCCCCACTCATTATTCTCATCTTCTTTCTCTTCGCTCTCTTTTCCATCTATTATTTAACAATTTCCCCCCATTCTCTTTTCAAATCTTGCCAGATTAAGTTTCGTGTCTTCTGGGGGTTCATACGTTCGCCAATCCTCAAGTTTCCACAATTCTTTTTCTTTTTTTCTAGGTTAGTTATCCATATGAATGATATTTCAATTTCATCGAAATATTTTATCTGAGATTTCAAACCCCAAATGAAACGAAATAACCCACAAGATTTCTTGCAATGGTTGGCTAAATAGCTTCTCTGATTGGTTTTGCAGCTCTTGCGGCTTCAACGATTCTGGACCTGTTGTCAAGGCCAGCCACTTAATCATGGTATCTCTCTTCTTTCTTTCTCTCCTCTCTTCTAACTAGTTGGGTCATTGGTTACTCAGATAATGAGAACTAAATATGGAATAAGGAGTATAAACTTAACAGACTTTGTTAATTTTATCTGAATTGTTATGTTTATGTCTTCTCCATTCAGTAATTTGTTTCCATATTGATTATAGATTATGGGTATAATTTATACTTTCATTTCTTTCCTAAGTTTTCTCTGGCTGAAGTTTCGACTAGGGGAAAGACTAGAGAGAGTGTTAAGTCTTGTGGAATTTTTCTCCGTATTAAATCTTAGTTTTCTTTTTTTTCCCTCCTACGTATTTGTCTACATATGTTGGGTTCTTTGTGAAATGATGCGCTTTTCTTGTCCTCTCCACATTTTATAGTATCTGAAGTTGAGCATATTCGAATCCTATATGTATATCACTTATGTCGTGTCATGTTATTTTTTTTCTCGAGTATACTTTACTATATATATATATTACCTATTGAATTAGCACTTCCTAAATAGAACTGGTGCATTTACTTATTTTCTGTTGATTTCTTTAATTTTGGAAAAGTACAAGAGTGGATGTTGCATAATTTTTAAAGTCGTCATTTTCAGTTTGAGAAGTTCCTATAACAGAAGCTCTTTGCTTATATGTTTTTGGACAGGCTGCAAAAATTCTTGCCAATTTAATTGTTATGGGCTCTGGGATACTTGCGAGGGCCTTTGTTCAAGCCTACCGTCAAGCCCTTGCAAGTAAGTACACACTTTTTATTCCACCATATTTCCTTCCTATCTCAAATTGGCCAATTTTTCGTCAATATTACTTTTATTTGGTGTAAAATGTTTATGGCTGGCTTGATGGAAAATTGACTTATAAAACAAAAGAAACTTTCACCTTGTTCTTGAACTATTAGAAGCTATAAATATAATGTAAATGTCAACTTGGGATGTTTAAGTGTTTTGGCAATAAGAACAAAGTTCTGTGTGCACATAGTTTAATTCTGCTTCAGGTGATAGAAATAGATATCAAAGTAATCTATTACATCCTTCTGGTCTTTTTAAGCTTGAATAGTGTCTTAGATCTTCGGCAAGTGGTCAAAAGAATTCATTATTTTTCAATCCTGTGACATGAACTAGCGATTTGCAAATAAAGAAGGGATTGTTTGCCCCACCAACTTCTTTAGTTGGTGTAAACAACTTTAACTTCAATACTAAACATGATTGTAAATTGCACATTTATTGAGTCATCTTTCCCTATTTTTCTACTTTTCACAATTATCGAGGAAGATTCTACTTTTCGCACTTAGTGAGTACTTTACATTCTCCTCTTTCCCCTATTAGAGCCTGATCTTTAATTCTTCTCGAATAGTAATGTAGATTCCCTTGTTACTAATTGTGGATTAGCGAGCATCTCTTTTCAATCCTTCTGCCTATATTATAATAGAAAGTAGTGAGGAGAGTGCCATCTCCAACCACAAGGGACATTGGAAGGACGGGATGGCAACCCCATTTGTTGTAGATGTGTTTATCCATCTTCTCGACAGCATGTCCTAGGCATAGCTCCTCTGTACTGACCTTATCTCCGATAAGCAGAGCTGTTTATTGGCCTGCCTACCGTTCGAAGGAATTGATTTAATAAGACAGCTCCTAATTTTATATTGCACATATTTTATAATCATTAGTTCGTTTTTCTTTTAACAAATAATCATTGAAAATAGAGTGTTCGTGGCCTGGATGATAGAGTCCTGCAGTTCCATCCTTAGGGTACCCTTGGAGAAAATGCTTTGATTGAACATGTACCTTATTAGTTTGAACAAAGTTGGTTGTTTATACACAGCTTTTACTTATTAACTAATTAATGGGACAGAGGTTGGCACCTGTAGTTGTAGTTTATTCATTATTATGCTTAGTATCAAGTTTTCTTTTGTGTGCTGTAGATGCTTCAAAGTCTGGTGTTGCTCAAGAGACAATGCAAAACACTGTTCGTAGAGCAAGCAAAGTGATGACGGAGCAAGAAGCGAGGCAGATTCTTGGTGTCACCGAGGAAACGCCTTGGGAAGAAGTTGCAAAGGTCAAATATCTATTGCTTTTCACTAAAATAGTTCTGGCTATATATAGATTTTGACAATCCTTCTCTTACCTATGCAGAAATATGACGCCTTGTTTGAAAGAAATGCTCAAACTGGAAGCTTTTATCTTCAGTCAAAAGTTCACAGAGCCAAGGAACGATTAGAAACTCTCTATCAGAACAAAGGTCAGGATGCCCCTAGCTGA

mRNA sequence

ATGGAAAAAGTCTACCTTGAATGCACTTCCGCACACGTTGTATTGCCATTAGAAGACACAGTAGAGGATAAAGCCATTCCCATACCCAAACTCCCTCACCTATCATATTTCATTTCTTCTCCTTCTCCATTGCTGCCTAAAAGCTCCATCCCAAGCTCTTGCGGCTTCAACGATTCTGGACCTGTTGTCAAGGCCAGCCACTTAATCATGGCTGCAAAAATTCTTGCCAATTTAATTGTTATGGGCTCTGGGATACTTGCGAGGGCCTTTGTTCAAGCCTACCGTCAAGCCCTTGCAAATGCTTCAAAGTCTGGTGTTGCTCAAGAGACAATGCAAAACACTGTTCGTAGAGCAAGCAAAGTGATGACGGAGCAAGAAGCGAGGCAGATTCTTGGTGTCACCGAGGAAACGCCTTGGGAAGAAGTTGCAAAGAAATATGACGCCTTGTTTGAAAGAAATGCTCAAACTGGAAGCTTTTATCTTCAGTCAAAAGTTCACAGAGCCAAGGAACGATTAGAAACTCTCTATCAGAACAAAGGTCAGGATGCCCCTAGCTGA

Coding sequence (CDS)

ATGGAAAAAGTCTACCTTGAATGCACTTCCGCACACGTTGTATTGCCATTAGAAGACACAGTAGAGGATAAAGCCATTCCCATACCCAAACTCCCTCACCTATCATATTTCATTTCTTCTCCTTCTCCATTGCTGCCTAAAAGCTCCATCCCAAGCTCTTGCGGCTTCAACGATTCTGGACCTGTTGTCAAGGCCAGCCACTTAATCATGGCTGCAAAAATTCTTGCCAATTTAATTGTTATGGGCTCTGGGATACTTGCGAGGGCCTTTGTTCAAGCCTACCGTCAAGCCCTTGCAAATGCTTCAAAGTCTGGTGTTGCTCAAGAGACAATGCAAAACACTGTTCGTAGAGCAAGCAAAGTGATGACGGAGCAAGAAGCGAGGCAGATTCTTGGTGTCACCGAGGAAACGCCTTGGGAAGAAGTTGCAAAGAAATATGACGCCTTGTTTGAAAGAAATGCTCAAACTGGAAGCTTTTATCTTCAGTCAAAAGTTCACAGAGCCAAGGAACGATTAGAAACTCTCTATCAGAACAAAGGTCAGGATGCCCCTAGCTGA

Homology

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BLAST of CSPI01G15930 vs. Swiss-Prot
Match: TIM16_DANRE (Mitochondrial import inner membrane translocase subunit tim16 OS=Danio rerio GN=pam16 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.2e-11
Identity = 50/106 (47.17%), Postives = 67/106 (63.21%), Query Frame = 1


Query: 72  AKILANLIVMGSGILARAFVQAYRQ--ALANASKSGVAQETMQNTVRRASKVMTEQEARQ 131
           AK LA +IVMG+ ++ RAF +A RQ  A + A+     Q   Q+    +   MT QEA+Q
Sbjct: 2   AKYLAQIIVMGAQVVGRAFARALRQEFAASQAAAEARGQAGRQSAAASSFTGMTLQEAQQ 61

Query: 132 ILGVTEETPWEEVAKKYDALFERN--AQTGSFYLQSKVHRAKERLE 174
           IL ++  TP EE+ K Y+ LF+ N  A  GSFY+QSKV RAKERL+
Sbjct: 62  ILNISTLTP-EEIQKNYEHLFKVNDKAVGGSFYIQSKVVRAKERLD 106

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BLAST of CSPI01G15930 vs. Swiss-Prot
Match: TIM16_MOUSE (Mitochondrial import inner membrane translocase subunit TIM16 OS=Mus musculus GN=Pam16 PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.9e-10
Identity = 50/115 (43.48%), Postives = 73/115 (63.48%), Query Frame = 1


Query: 72  AKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKV--MTEQEARQ 131
           AK LA +IVMG  ++ RAF +A RQ  A +  +  A+    +    AS +  ++ QEA+Q
Sbjct: 2   AKYLAQIIVMGVQVVGRAFARALRQEFAASQAAADARGRAGHQSAAASNLSGLSLQEAQQ 61

Query: 132 ILGVTEETPWEEVAKKYDALFERNAQT--GSFYLQSKVHRAKERLETLYQNKGQD 183
           IL V++ +P EEV K Y+ LF+ N ++  GSFYLQSKV RAKERL+   + + Q+
Sbjct: 62  ILNVSKLSP-EEVQKNYEHLFKVNDKSVGGSFYLQSKVVRAKERLDEELRIQAQE 115

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BLAST of CSPI01G15930 vs. Swiss-Prot
Match: TIM16_HUMAN (Mitochondrial import inner membrane translocase subunit TIM16 OS=Homo sapiens GN=PAM16 PE=1 SV=2)

HSP 1 Score: 67.0 bits (162), Expect = 2.5e-10
Identity = 50/115 (43.48%), Postives = 73/115 (63.48%), Query Frame = 1


Query: 72  AKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKV--MTEQEARQ 131
           AK LA +IVMG  ++ RAF +A RQ  A +  +  A+    +    AS +  ++ QEA+Q
Sbjct: 2   AKYLAQIIVMGVQVVGRAFARALRQEFAASRAAADARGRAGHRSAAASNLSGLSLQEAQQ 61

Query: 132 ILGVTEETPWEEVAKKYDALFERNAQT--GSFYLQSKVHRAKERLETLYQNKGQD 183
           IL V++ +P EEV K Y+ LF+ N ++  GSFYLQSKV RAKERL+   + + Q+
Sbjct: 62  ILNVSKLSP-EEVQKNYEHLFKVNDKSVGGSFYLQSKVVRAKERLDEELKIQAQE 115

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BLAST of CSPI01G15930 vs. Swiss-Prot
Match: TI16B_XENLA (Mitochondrial import inner membrane translocase subunit tim16-B OS=Xenopus laevis GN=pam16-b PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 9.4e-10
Identity = 50/107 (46.73%), Postives = 66/107 (61.68%), Query Frame = 1


Query: 72  AKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKVMTE---QEAR 131
           AK LA +++MG  ++ RAF +A RQ  A ASK+         T   A   ++    QEA+
Sbjct: 2   AKYLAQIVLMGVQVVGRAFTRALRQEFA-ASKTAAEARGRAGTESAAVSSLSGISFQEAQ 61

Query: 132 QILGVTEETPWEEVAKKYDALFERN--AQTGSFYLQSKVHRAKERLE 174
           QIL V++ TP EE+ K Y+ LF+ N  A  GSFYLQSKV RAKERL+
Sbjct: 62  QILNVSKLTP-EEIQKNYEHLFKVNDKAVGGSFYLQSKVVRAKERLD 106

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BLAST of CSPI01G15930 vs. Swiss-Prot
Match: TIM16_SCHPO (Mitochondrial import inner membrane translocase subunit tim16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pam16 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 9.4e-10
Identity = 46/116 (39.66%), Postives = 70/116 (60.34%), Query Frame = 1


Query: 73  KILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNT---VRRASKVMTEQEARQ 132
           + +   I++GS ++++AFVQAY+Q +ANA++    Q     +   VRR    MT QEA  
Sbjct: 5   RAVGRFIIVGSQVMSKAFVQAYKQMIANAAQQSTGQAAASKSSTAVRRGE--MTIQEAGS 64

Query: 133 ILGVTEETPWE-EVAKKYDALFERN--AQTGSFYLQSKVHRAKERLETLYQNKGQD 183
           IL +  E+  E E+ K++  +FE N   + GSFYLQSKV RA E+L++    K Q+
Sbjct: 65  ILNIKPESLEEGELEKRFQKMFEINDPKKGGSFYLQSKVFRAHEKLKSELDQKIQE 118

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BLAST of CSPI01G15930 vs. TrEMBL
Match: A0A0A0LW69_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G185100 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.3e-53
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1


Query: 70  MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKVMTEQEARQ 129
           MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKVMTEQEARQ
Sbjct: 1   MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKVMTEQEARQ 60

Query: 130 ILGVTEETPWEEVAKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQNKGQDAPS 186
           ILGVTEETPWEEVAKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQNKGQDAPS
Sbjct: 61  ILGVTEETPWEEVAKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQNKGQDAPS 116

[Close]

BLAST of CSPI01G15930 vs. TrEMBL
Match: A0A059AV82_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00433 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 5.3e-44
Identity = 97/116 (83.62%), Postives = 106/116 (91.38%), Query Frame = 1


Query: 70  MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKVMTEQEARQ 129
           MAAKILANLIVMG GI+ARA VQAYRQALANASK+GVAQET+QNTVRRASK MTEQEARQ
Sbjct: 1   MAAKILANLIVMGGGIMARALVQAYRQALANASKTGVAQETLQNTVRRASKAMTEQEARQ 60

Query: 130 ILGVTEETPWEEVAKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQNKGQDAPS 186
           ILGVTEET WE++ KKYDALFERNA+ GSFY+QSKVHRAKE LE++YQ KGQ  PS
Sbjct: 61  ILGVTEETAWEDILKKYDALFERNAKNGSFYIQSKVHRAKECLESVYQGKGQSNPS 116

[Close]

BLAST of CSPI01G15930 vs. TrEMBL
Match: A0A067LED2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23812 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 5.3e-44
Identity = 97/116 (83.62%), Postives = 106/116 (91.38%), Query Frame = 1


Query: 70  MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKVMTEQEARQ 129
           MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQET+QNT+R+ SKVMTEQEARQ
Sbjct: 1   MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETIQNTIRKGSKVMTEQEARQ 60

Query: 130 ILGVTEETPWEEVAKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQNKGQDAPS 186
           ILGVTEET WEE+ KKYD LFERNA+ GSFYLQSKVHRAKE LE +++ KG+  PS
Sbjct: 61  ILGVTEETAWEEIVKKYDTLFERNAKNGSFYLQSKVHRAKECLEAVHRGKGEGTPS 116

[Close]

BLAST of CSPI01G15930 vs. TrEMBL
Match: A0A0A0LSD2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G011490 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 5.9e-43
Identity = 95/116 (81.90%), Postives = 105/116 (90.52%), Query Frame = 1


Query: 70  MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKVMTEQEARQ 129
           MAAKILA+LIV GS ++ RA  QAY+QA+ NAS SGVAQET++NTVRRASKVMTEQEARQ
Sbjct: 1   MAAKILAHLIVSGSVVIGRAVAQAYQQAIRNASNSGVAQETIRNTVRRASKVMTEQEARQ 60

Query: 130 ILGVTEETPWEEVAKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQNKGQDAPS 186
           ILGVTEE PWEE+ KKYDALFERNAQTGSFYLQSKVHRAKERLETL+ +KGQD PS
Sbjct: 61  ILGVTEEMPWEEIVKKYDALFERNAQTGSFYLQSKVHRAKERLETLHHSKGQDGPS 116

[Close]

BLAST of CSPI01G15930 vs. TrEMBL
Match: C6T494_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.9e-42
Identity = 96/116 (82.76%), Postives = 102/116 (87.93%), Query Frame = 1


Query: 70  MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKVMTEQEARQ 129
           MAAKILANLIVMG GILARA VQAYRQAL NASK+GVAQET+QNT+RRASKVMTEQEARQ
Sbjct: 1   MAAKILANLIVMGGGILARAVVQAYRQALTNASKNGVAQETIQNTMRRASKVMTEQEARQ 60

Query: 130 ILGVTEETPWEEVAKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQNKGQDAPS 186
           ILGVTEETPWEE+ KKYD LFE NA+ GSFYLQSKVHRAKE LE + Q K Q  PS
Sbjct: 61  ILGVTEETPWEEIIKKYDNLFENNAKNGSFYLQSKVHRAKECLEAVQQGKSQGTPS 116

[Close]

BLAST of CSPI01G15930 vs. TAIR10
Match: AT3G59280.1 (AT3G59280.1 Protein Transporter, Pam16)

HSP 1 Score: 163.3 bits (412), Expect = 1.4e-40
Identity = 85/116 (73.28%), Postives = 98/116 (84.48%), Query Frame = 1


Query: 70  MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKVMTEQEARQ 129
           MA ++LANLIVMGSGI+ RA  QAYRQALANASKSGVAQE MQN VR+A K +TEQEARQ
Sbjct: 1   MAGRLLANLIVMGSGIIGRAVFQAYRQALANASKSGVAQEAMQNGVRQAGKAITEQEARQ 60

Query: 130 ILGVTEETPWEEVAKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQNKGQDAPS 186
           ILGVTE+T WEE+ +KYD LFE NA+ GSFYLQSKVHRAKE LE +Y+++G   PS
Sbjct: 61  ILGVTEKTSWEEILQKYDKLFENNAKAGSFYLQSKVHRAKECLEVVYRSQGNGTPS 116

[Close]

BLAST of CSPI01G15930 vs. TAIR10
Match: AT5G61880.1 (AT5G61880.1 Protein Transporter, Pam16)

HSP 1 Score: 138.7 bits (348), Expect = 3.8e-33
Identity = 77/108 (71.30%), Postives = 90/108 (83.33%), Query Frame = 1


Query: 70  MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKVMTEQEARQ 129
           MAA++LA++IVMGSGI+ARA  QAYRQALANASK+GVA E  Q T++R   +  E EARQ
Sbjct: 1   MAARVLASVIVMGSGIIARACTQAYRQALANASKTGVAHEATQ-TIKRGLTI-GEAEARQ 60

Query: 130 ILGVTEETPWEEVAKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQ 178
           ILGVTE++ W+E+ KKYD LFERNAQ GSFYLQSKVHRAKE LET YQ
Sbjct: 61  ILGVTEKSSWDEILKKYDTLFERNAQNGSFYLQSKVHRAKECLETAYQ 106

[Close]

BLAST of CSPI01G15930 vs. NCBI nr
Match: gi|449443552|ref|XP_004139541.1| (PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Cucumis sativus])

HSP 1 Score: 217.6 bits (553), Expect = 1.8e-53
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1


Query: 70  MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKVMTEQEARQ 129
           MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKVMTEQEARQ
Sbjct: 1   MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKVMTEQEARQ 60

Query: 130 ILGVTEETPWEEVAKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQNKGQDAPS 186
           ILGVTEETPWEEVAKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQNKGQDAPS
Sbjct: 61  ILGVTEETPWEEVAKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQNKGQDAPS 116

[Close]

BLAST of CSPI01G15930 vs. NCBI nr
Match: gi|659127284|ref|XP_008463624.1| (PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Cucumis melo])

HSP 1 Score: 212.6 bits (540), Expect = 5.8e-52
Identity = 114/116 (98.28%), Postives = 114/116 (98.28%), Query Frame = 1


Query: 70  MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKVMTEQEARQ 129
           MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKVMTEQEARQ
Sbjct: 1   MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKVMTEQEARQ 60

Query: 130 ILGVTEETPWEEVAKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQNKGQDAPS 186
           ILGVTEETPWEEV KKYDALFERNAQTGSFYLQSKVHRAKERLETLYQ KGQDAPS
Sbjct: 61  ILGVTEETPWEEVVKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQIKGQDAPS 116

[Close]

BLAST of CSPI01G15930 vs. NCBI nr
Match: gi|802559894|ref|XP_012066242.1| (PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas])

HSP 1 Score: 185.7 bits (470), Expect = 7.6e-44
Identity = 97/116 (83.62%), Postives = 106/116 (91.38%), Query Frame = 1


Query: 70  MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKVMTEQEARQ 129
           MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQET+QNT+R+ SKVMTEQEARQ
Sbjct: 1   MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETIQNTIRKGSKVMTEQEARQ 60

Query: 130 ILGVTEETPWEEVAKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQNKGQDAPS 186
           ILGVTEET WEE+ KKYD LFERNA+ GSFYLQSKVHRAKE LE +++ KG+  PS
Sbjct: 61  ILGVTEETAWEEIVKKYDTLFERNAKNGSFYLQSKVHRAKECLEAVHRGKGEGTPS 116

[Close]

BLAST of CSPI01G15930 vs. NCBI nr
Match: gi|702433133|ref|XP_010069346.1| (PREDICTED: mitochondrial import inner membrane translocase subunit Tim16 [Eucalyptus grandis])

HSP 1 Score: 185.7 bits (470), Expect = 7.6e-44
Identity = 97/116 (83.62%), Postives = 106/116 (91.38%), Query Frame = 1


Query: 70  MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKVMTEQEARQ 129
           MAAKILANLIVMG GI+ARA VQAYRQALANASK+GVAQET+QNTVRRASK MTEQEARQ
Sbjct: 1   MAAKILANLIVMGGGIMARALVQAYRQALANASKTGVAQETLQNTVRRASKAMTEQEARQ 60

Query: 130 ILGVTEETPWEEVAKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQNKGQDAPS 186
           ILGVTEET WE++ KKYDALFERNA+ GSFY+QSKVHRAKE LE++YQ KGQ  PS
Sbjct: 61  ILGVTEETAWEDILKKYDALFERNAKNGSFYIQSKVHRAKECLESVYQGKGQSNPS 116

[Close]

BLAST of CSPI01G15930 vs. NCBI nr
Match: gi|659106003|ref|XP_008453226.1| (PREDICTED: mitochondrial import inner membrane translocase subunit tim16-like isoform X1 [Cucumis melo])

HSP 1 Score: 184.9 bits (468), Expect = 1.3e-43
Identity = 97/116 (83.62%), Postives = 105/116 (90.52%), Query Frame = 1


Query: 70  MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKVMTEQEARQ 129
           MAAK+LA+LIV GS I+ RA  QAY+QAL NASKSGVAQET+QNTVRRASKVMTEQEARQ
Sbjct: 1   MAAKVLAHLIVSGSVIIGRAIAQAYQQALRNASKSGVAQETIQNTVRRASKVMTEQEARQ 60

Query: 130 ILGVTEETPWEEVAKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQNKGQDAPS 186
           ILGVTEE PWEE+ KKYD+LFERNAQTGSFYLQSKVHRAKERLETLY +K QD PS
Sbjct: 61  ILGVTEEMPWEEIVKKYDSLFERNAQTGSFYLQSKVHRAKERLETLYHSKDQDVPS 116

The following BLAST results are available for this feature:

BLAST of CSPI01G15930 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TIM16_DANRE	2.2e-11	47.17	Mitochondrial import inner membrane translocase subunit tim16 OS=Danio rerio GN=...	[more]
TIM16_MOUSE	1.9e-10	43.48	Mitochondrial import inner membrane translocase subunit TIM16 OS=Mus musculus GN...	[more]
TIM16_HUMAN	2.5e-10	43.48	Mitochondrial import inner membrane translocase subunit TIM16 OS=Homo sapiens GN...	[more]
TI16B_XENLA	9.4e-10	46.73	Mitochondrial import inner membrane translocase subunit tim16-B OS=Xenopus laevi...	[more]
TIM16_SCHPO	9.4e-10	39.66	Mitochondrial import inner membrane translocase subunit tim16 OS=Schizosaccharom...	[more]

BLAST of CSPI01G15930 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LW69_CUCSA	1.3e-53	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G185100 PE=4 SV=1	[more]
A0A059AV82_EUCGR	5.3e-44	83.62	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00433 PE=4 SV=1	[more]
A0A067LED2_JATCU	5.3e-44	83.62	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23812 PE=4 SV=1	[more]
A0A0A0LSD2_CUCSA	5.9e-43	81.90	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G011490 PE=4 SV=1	[more]
C6T494_SOYBN	2.9e-42	82.76	Putative uncharacterized protein OS=Glycine max PE=2 SV=1	[more]

BLAST of CSPI01G15930 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G59280.1	1.4e-40	73.28	Protein Transporter, Pam16	[more]
AT5G61880.1	3.8e-33	71.30	Protein Transporter, Pam16	[more]

BLAST of CSPI01G15930 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449443552\|ref\|XP_004139541.1\|	1.8e-53	100.00	PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Cucumi...	[more]
gi\|659127284\|ref\|XP_008463624.1\|	5.8e-52	98.28	PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Cucumi...	[more]
gi\|802559894\|ref\|XP_012066242.1\|	7.6e-44	83.62	PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatrop...	[more]
gi\|702433133\|ref\|XP_010069346.1\|	7.6e-44	83.62	PREDICTED: mitochondrial import inner membrane translocase subunit Tim16 [Eucaly...	[more]
gi\|659106003\|ref\|XP_008453226.1\|	1.3e-43	83.62	PREDICTED: mitochondrial import inner membrane translocase subunit tim16-like is...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005341	Tim16

Vocabulary: **Cellular Component**
Term	Definition
GO:0005744	mitochondrial inner membrane presequence translocase complex

Vocabulary: **Biological Process**
Term	Definition
GO:0030150	protein import into mitochondrial matrix

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030150	protein import into mitochondrial matrix
cellular_component	GO:0005744	mitochondrial inner membrane presequence translocase complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G15930.1	CSPI01G15930.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005341	Mitochondrial import inner membrane translocase subunit Tim16	PANTHER	PTHR12388	MITOCHONDRIA ASSOCIATED GRANULOCYTE MACROPHAGE CSF SIGNALING MOLECULE	coord: 70..179 score: 5.1
None	No IPR available	PANTHER	PTHR12388:SF1	SUBFAMILY NOT NAMED	coord: 70..179 score: 5.1
None	No IPR available	PFAM	PF03656	Pam16	coord: 70..180 score: 3.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G15930	Cla009014	Watermelon (97103) v1	cpiwmB054
CSPI01G15930	Csa1G185100	Cucumber (Chinese Long) v2	cpicuB000
CSPI01G15930	MELO3C025561	Melon (DHL92) v3.5.1	cpimeB016
CSPI01G15930	ClCG01G010310	Watermelon (Charleston Gray)	cpiwcgB025
CSPI01G15930	Lsi02G011100	Bottle gourd (USVL1VR-Ls)	cpilsiB033
CSPI01G15930	MELO3C025561.2	Melon (DHL92) v3.6.1	cpimedB025
CSPI01G15930	CsaV3_1G017160	Cucumber (Chinese Long) v3	cpicucB001
CSPI01G15930	Cla97C01G010260	Watermelon (97103) v2	cpiwmbB009
CSPI01G15930	CsGy1G015570	Cucumber (Gy14) v2	cgybcpiB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G15930	Cucurbita pepo (Zucchini)	cpecpiB017
CSPI01G15930	Cucurbita pepo (Zucchini)	cpecpiB051
CSPI01G15930	Cucurbita pepo (Zucchini)	cpecpiB523
CSPI01G15930	Bottle gourd (USVL1VR-Ls)	cpilsiB019
CSPI01G15930	Bottle gourd (USVL1VR-Ls)	cpilsiB038
CSPI01G15930	Cucumber (Gy14) v2	cgybcpiB249
CSPI01G15930	Silver-seed gourd	carcpiB0435
CSPI01G15930	Silver-seed gourd	carcpiB1073
CSPI01G15930	Cucumber (Chinese Long) v3	cpicucB052
CSPI01G15930	Watermelon (97103) v2	cpiwmbB005
CSPI01G15930	Wax gourd	cpiwgoB036
CSPI01G15930	Wax gourd	cpiwgoB059
CSPI01G15930	Wild cucumber (PI 183967)	cpicpiB039
CSPI01G15930	Cucumber (Gy14) v1	cgycpiB017
CSPI01G15930	Cucurbita maxima (Rimu)	cmacpiB212
CSPI01G15930	Cucurbita moschata (Rifu)	cmocpiB200
CSPI01G15930	Watermelon (Charleston Gray)	cpiwcgB022
CSPI01G15930	Watermelon (97103) v1	cpiwmB050