Csa1G185100 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G185100
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Mitochondrial import inner membrane translocase subunit TIM16; contains IPR005341 (Mitochondrial import inner membrane translocase subunit Tim16)
Location	Chr1 : 11241452 .. 11243871 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTGCAGCTCTTGCGGCTTCAACGATTCTGGACCTGTTGTCAAGGCCAGCCACTTAATCATGGTATCTCTCTTCTTTCTTTCTCTCCTCTCTTCTAACTAGTTGGGGCATTGGTTACTCAGATAATGAGAACTAAATATGGAATAAGGAGTATAAACTTAACATACTTTGTTAATTTTATCTGAATTGTTATGTTTATGTCTTCTCCATTCAGTAATTTGTTTCCATATTGATTATAGATTATGGGTATAATTTATACTTTCATTTCTTTCCTAAGTTTTCTCTGGCTGAAGTTTCGACTAGGGGAAAGACTAGAGAGTGTTAAGTCTTGTGGAATTTTTCTCCGTATTAAATCTTAGTTTTCTTTTTTTTCCCTCCTACGTATTTGTCTACATATGTTGGGTTCTTTGTGAAATGATGCGCTTTTCTTGTCCTCTCCACATTTTATAGTATCTGAAGTTGAGCATATTCGAATCCTATATGTATATCGCTTATGTCGTGTCATGTTATTTTTTTTCTCGAGTATACTTTACTATATATATATATTACCTATTGAATTAGCACTTCCTAATTAGAACTGGTGCATTTACTTATTTTCTGTTGATTTCTTTAATTTTGGAAAAGTACAAGAGTGGATGTTGCATAATTTTTAAAGTCGTCATTTTCAGTTTGAGAAATTCCTATAACAGAAGCTCTTTGCTTATATGTTTTTGGACAGGCTGCAAAAATTCTTGCCAATTTAATTGTTATGGGCTCTGGGATACTTGCGAGGGCCTTTGTTCAAGCCTACCGTCAAGCCCTTGCAAGTAAGTACACACTTTTTATTCCACCATATTTCCTTCCTATCTCAAATTGGCCAATTTTTCCTCAATATTACTTTTATTTGGTGTAAAATGTTTATGGCTGGCTTGATGGAAACTTGACTTATAAAACAAACGAAACTTTCACCTTGTTCTTGAACTATTAGAAGCTATAAATATAATGTAAATGTCAACTTGGGATGTTTAAGTGTTTTGGCAATAAGAACAAAGTTCTGTGTGCACATAGTTTAATTCTGCTTCAGGTGATAGAAATAGATATCAAAGTAATCTATTACATCCTTCTGGTCTTTTTAAGCTTGAATAGTGTCTTAGATCTTCGGCAAGTGGTCAAAAGAATTCATTATTTTTCAATCCTGTGACATGAACTAGCGATTTGCAAATAAAGAAGGGATTGTTTGCCCCACCAACTTCTTTAGTTGGTGTAAACAACTTTAACTTCAATACTAAACATGATTGTAAATTGCACATTTATTGAGTCATCTTTCCCTATTTTTCTACTTTTCACAATTATCGAGGAAGATTCTACTTTTCGCACTTAGTGAGTACTTTACATTCTCCTCTTTCCCCTATTAGAGCCTGATCCTTAATTCTTCTCGAATAGTAATGTAGATTCCCTTGTTACTAATTGTGGATTAGCGAGCATCTCTTTTCAATCCTTCTGCCTATATTATAATAGAAAGTAGTGAGGAGAGTGCCATCTCCAACCACAAGGGACATTGGAAGGACGGGATGGCAACCCCATTTGTTGTAGATGTGTTTATCCATCTTCTCGACAGCATGTCCTAGGCATAGCTCCTCTGTACTGACCTTATCTCCGATAAGCAGAGCTGTTTATTGGCCTGCCTACCGTTCGAAGGAATTGATTTAATAAGACAGCTCCTAATTTTATATTGCACATATTTTATAATCATTAGTTCGTTTTTCTTTTAACAAATAATCATTGAAAATAGAGTGTTCGTGGCCTGGATGATAGAGTCCTGCAGTTCCATCCTTAGGGTACCCTTGGAGAAAATGCTTTGATTGAACATGTACCTTATTAGTTTGAACAAAGTTGGTTGTTTATACACAGCTTTTACTTATTAACTAATTAATGGGACAGAGGTTGGCACCTGTAGTTGTAGTTTATTCATTATTATGCTTAGTATCAAGTTTTCTTTTGTGTGCTGTAGATGCTTCAAAGTCTGGTGTTGCTCAAGAGACAATGCAAAACACTGTTCGTAGAGCAAGCAAAGTGATGACGGAGCAAGAAGCGAGGCAGATTCTTGGTGTCACCGAGGAAACGCCTTGGGAAGAAGTTGCAAAGGTCAAATATCTATTGCTTTTCACTAAAATAGTTCTGGCTATATATAGATTTTGACAACCTTCTCTTACCTATGCAGAAATATGACGCCTTGTTTGAAAGAAATGCTCAAACTGGAAGCTTTTATCTTCAGTCAAAAGTTCACAGAGCCAAGGAACGATTAGAAACTCTCTATCAGAACAAAGGTCAGGATGCCCCTAGCTGAGTGTTCTGAGAAATGTGTTAGTTTTGAACATTTTACTGATCTTGTATAATTTTTATTTTCATTATGGTTGGCAAGGCATAAATGATGAAATTGG

mRNA sequence

ATGGCTGCAAAAATTCTTGCCAATTTAATTGTTATGGGCTCTGGGATACTTGCGAGGGCCTTTGTTCAAGCCTACCGTCAAGCCCTTGCAAATGCTTCAAAGTCTGGTGTTGCTCAAGAGACAATGCAAAACACTGTTCGTAGAGCAAGCAAAGTGATGACGGAGCAAGAAGCGAGGCAGATTCTTGGTGTCACCGAGGAAACGCCTTGGGAAGAAGTTGCAAAGAAATATGACGCCTTGTTTGAAAGAAATGCTCAAACTGGAAGCTTTTATCTTCAGTCAAAAGTTCACAGAGCCAAGGAACGATTAGAAACTCTCTATCAGAACAAAGGTCAGGATGCCCCTAGCTGA

Coding sequence (CDS)

ATGGCTGCAAAAATTCTTGCCAATTTAATTGTTATGGGCTCTGGGATACTTGCGAGGGCCTTTGTTCAAGCCTACCGTCAAGCCCTTGCAAATGCTTCAAAGTCTGGTGTTGCTCAAGAGACAATGCAAAACACTGTTCGTAGAGCAAGCAAAGTGATGACGGAGCAAGAAGCGAGGCAGATTCTTGGTGTCACCGAGGAAACGCCTTGGGAAGAAGTTGCAAAGAAATATGACGCCTTGTTTGAAAGAAATGCTCAAACTGGAAGCTTTTATCTTCAGTCAAAAGTTCACAGAGCCAAGGAACGATTAGAAACTCTCTATCAGAACAAAGGTCAGGATGCCCCTAGCTGA

Protein sequence

MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKVMTEQEARQILGVTEETPWEEVAKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQNKGQDAPS*

Homology

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BLAST of Csa1G185100 vs. Swiss-Prot
Match: TIM16_DANRE (Mitochondrial import inner membrane translocase subunit tim16 OS=Danio rerio GN=pam16 PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 6.7e-14
Identity = 50/106 (47.17%), Postives = 65/106 (61.32%), Query Frame = 1


Query: 3   AKILANLIVMGSGILARAFVQAYRQ--ALANASKSGVAQETMQNTVRRASKVMTEQEARQ 62
           AK LA +IVMG+ ++ RAF +A RQ  A + A+     Q   Q+    +   MT QEA+Q
Sbjct: 2   AKYLAQIIVMGAQVVGRAFARALRQEFAASQAAAEARGQAGRQSAAASSFTGMTLQEAQQ 61

Query: 63  ILGVTEETPWEEVAKKYDALFERN--AQTGSFYLQSKVHRAKERLE 105
           IL ++  TP EE+ K Y+ LF+ N  A  GSFY+QSKV RAKERL+
Sbjct: 62  ILNISTLTP-EEIQKNYEHLFKVNDKAVGGSFYIQSKVVRAKERLD 106

[Close]

BLAST of Csa1G185100 vs. Swiss-Prot
Match: TIM16_MOUSE (Mitochondrial import inner membrane translocase subunit TIM16 OS=Mus musculus GN=Pam16 PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 7.4e-13
Identity = 50/115 (43.48%), Postives = 71/115 (61.74%), Query Frame = 1


Query: 3   AKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKV--MTEQEARQ 62
           AK LA +IVMG  ++ RAF +A RQ  A +  +  A+    +    AS +  ++ QEA+Q
Sbjct: 2   AKYLAQIIVMGVQVVGRAFARALRQEFAASQAAADARGRAGHQSAAASNLSGLSLQEAQQ 61

Query: 63  ILGVTEETPWEEVAKKYDALFERNAQT--GSFYLQSKVHRAKERLETLYQNKGQD 114
           IL V++ +P EEV K Y+ LF+ N ++  GSFYLQSKV RAKERL+   + + Q+
Sbjct: 62  ILNVSKLSP-EEVQKNYEHLFKVNDKSVGGSFYLQSKVVRAKERLDEELRIQAQE 115

[Close]

BLAST of Csa1G185100 vs. Swiss-Prot
Match: TIM16_HUMAN (Mitochondrial import inner membrane translocase subunit TIM16 OS=Homo sapiens GN=PAM16 PE=1 SV=2)

HSP 1 Score: 74.3 bits (181), Expect = 9.7e-13
Identity = 50/115 (43.48%), Postives = 71/115 (61.74%), Query Frame = 1


Query: 3   AKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKV--MTEQEARQ 62
           AK LA +IVMG  ++ RAF +A RQ  A +  +  A+    +    AS +  ++ QEA+Q
Sbjct: 2   AKYLAQIIVMGVQVVGRAFARALRQEFAASRAAADARGRAGHRSAAASNLSGLSLQEAQQ 61

Query: 63  ILGVTEETPWEEVAKKYDALFERNAQT--GSFYLQSKVHRAKERLETLYQNKGQD 114
           IL V++ +P EEV K Y+ LF+ N ++  GSFYLQSKV RAKERL+   + + Q+
Sbjct: 62  ILNVSKLSP-EEVQKNYEHLFKVNDKSVGGSFYLQSKVVRAKERLDEELKIQAQE 115

[Close]

BLAST of Csa1G185100 vs. Swiss-Prot
Match: TI16B_XENLA (Mitochondrial import inner membrane translocase subunit tim16-B OS=Xenopus laevis GN=pam16-b PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.8e-12
Identity = 50/107 (46.73%), Postives = 64/107 (59.81%), Query Frame = 1


Query: 3   AKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKVMTE---QEAR 62
           AK LA +++MG  ++ RAF +A RQ  A ASK+         T   A   ++    QEA+
Sbjct: 2   AKYLAQIVLMGVQVVGRAFTRALRQEFA-ASKTAAEARGRAGTESAAVSSLSGISFQEAQ 61

Query: 63  QILGVTEETPWEEVAKKYDALFERN--AQTGSFYLQSKVHRAKERLE 105
           QIL V++ TP EE+ K Y+ LF+ N  A  GSFYLQSKV RAKERL+
Sbjct: 62  QILNVSKLTP-EEIQKNYEHLFKVNDKAVGGSFYLQSKVVRAKERLD 106

[Close]

BLAST of Csa1G185100 vs. Swiss-Prot
Match: TIM16_SCHPO (Mitochondrial import inner membrane translocase subunit tim16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pam16 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.7e-12
Identity = 46/116 (39.66%), Postives = 68/116 (58.62%), Query Frame = 1


Query: 4   KILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNT---VRRASKVMTEQEARQ 63
           + +   I++GS ++++AFVQAY+Q +ANA++    Q     +   VRR    MT QEA  
Sbjct: 5   RAVGRFIIVGSQVMSKAFVQAYKQMIANAAQQSTGQAAASKSSTAVRRGE--MTIQEAGS 64

Query: 64  ILGVTEETPWE-EVAKKYDALFERN--AQTGSFYLQSKVHRAKERLETLYQNKGQD 114
           IL +  E+  E E+ K++  +FE N   + GSFYLQSKV RA E+L++    K Q+
Sbjct: 65  ILNIKPESLEEGELEKRFQKMFEINDPKKGGSFYLQSKVFRAHEKLKSELDQKIQE 118

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BLAST of Csa1G185100 vs. TrEMBL
Match: A0A0A0LW69_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G185100 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 5.0e-56
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1


Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKVMTEQEARQ 60
           MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKVMTEQEARQ
Sbjct: 1   MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKVMTEQEARQ 60

Query: 61  ILGVTEETPWEEVAKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQNKGQDAPS 117
           ILGVTEETPWEEVAKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQNKGQDAPS
Sbjct: 61  ILGVTEETPWEEVAKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQNKGQDAPS 116

[Close]

BLAST of Csa1G185100 vs. TrEMBL
Match: A0A059AV82_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00433 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 2.1e-46
Identity = 97/116 (83.62%), Postives = 106/116 (91.38%), Query Frame = 1


Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKVMTEQEARQ 60
           MAAKILANLIVMG GI+ARA VQAYRQALANASK+GVAQET+QNTVRRASK MTEQEARQ
Sbjct: 1   MAAKILANLIVMGGGIMARALVQAYRQALANASKTGVAQETLQNTVRRASKAMTEQEARQ 60

Query: 61  ILGVTEETPWEEVAKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQNKGQDAPS 117
           ILGVTEET WE++ KKYDALFERNA+ GSFY+QSKVHRAKE LE++YQ KGQ  PS
Sbjct: 61  ILGVTEETAWEDILKKYDALFERNAKNGSFYIQSKVHRAKECLESVYQGKGQSNPS 116

[Close]

BLAST of Csa1G185100 vs. TrEMBL
Match: A0A067LED2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23812 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 2.1e-46
Identity = 97/116 (83.62%), Postives = 106/116 (91.38%), Query Frame = 1


Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKVMTEQEARQ 60
           MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQET+QNT+R+ SKVMTEQEARQ
Sbjct: 1   MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETIQNTIRKGSKVMTEQEARQ 60

Query: 61  ILGVTEETPWEEVAKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQNKGQDAPS 117
           ILGVTEET WEE+ KKYD LFERNA+ GSFYLQSKVHRAKE LE +++ KG+  PS
Sbjct: 61  ILGVTEETAWEEIVKKYDTLFERNAKNGSFYLQSKVHRAKECLEAVHRGKGEGTPS 116

[Close]

BLAST of Csa1G185100 vs. TrEMBL
Match: A0A0A0LSD2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G011490 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 2.3e-45
Identity = 95/116 (81.90%), Postives = 105/116 (90.52%), Query Frame = 1


Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKVMTEQEARQ 60
           MAAKILA+LIV GS ++ RA  QAY+QA+ NAS SGVAQET++NTVRRASKVMTEQEARQ
Sbjct: 1   MAAKILAHLIVSGSVVIGRAVAQAYQQAIRNASNSGVAQETIRNTVRRASKVMTEQEARQ 60

Query: 61  ILGVTEETPWEEVAKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQNKGQDAPS 117
           ILGVTEE PWEE+ KKYDALFERNAQTGSFYLQSKVHRAKERLETL+ +KGQD PS
Sbjct: 61  ILGVTEEMPWEEIVKKYDALFERNAQTGSFYLQSKVHRAKERLETLHHSKGQDGPS 116

[Close]

BLAST of Csa1G185100 vs. TrEMBL
Match: C6T494_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 1.1e-44
Identity = 96/116 (82.76%), Postives = 102/116 (87.93%), Query Frame = 1


Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKVMTEQEARQ 60
           MAAKILANLIVMG GILARA VQAYRQAL NASK+GVAQET+QNT+RRASKVMTEQEARQ
Sbjct: 1   MAAKILANLIVMGGGILARAVVQAYRQALTNASKNGVAQETIQNTMRRASKVMTEQEARQ 60

Query: 61  ILGVTEETPWEEVAKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQNKGQDAPS 117
           ILGVTEETPWEE+ KKYD LFE NA+ GSFYLQSKVHRAKE LE + Q K Q  PS
Sbjct: 61  ILGVTEETPWEEIIKKYDNLFENNAKNGSFYLQSKVHRAKECLEAVQQGKSQGTPS 116

[Close]

BLAST of Csa1G185100 vs. TAIR10
Match: AT3G59280.1 (AT3G59280.1 Protein Transporter, Pam16)

HSP 1 Score: 170.6 bits (431), Expect = 5.6e-43
Identity = 85/116 (73.28%), Postives = 96/116 (82.76%), Query Frame = 1


Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKVMTEQEARQ 60
           MA ++LANLIVMGSGI+ RA  QAYRQALANASKSGVAQE MQN VR+A K +TEQEARQ
Sbjct: 1   MAGRLLANLIVMGSGIIGRAVFQAYRQALANASKSGVAQEAMQNGVRQAGKAITEQEARQ 60

Query: 61  ILGVTEETPWEEVAKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQNKGQDAPS 117
           ILGVTE+T WEE+ +KYD LFE NA+ GSFYLQSKVHRAKE LE +Y+++G   PS
Sbjct: 61  ILGVTEKTSWEEILQKYDKLFENNAKAGSFYLQSKVHRAKECLEVVYRSQGNGTPS 116

[Close]

BLAST of Csa1G185100 vs. TAIR10
Match: AT5G61880.1 (AT5G61880.1 Protein Transporter, Pam16)

HSP 1 Score: 146.4 bits (368), Expect = 1.1e-35
Identity = 77/108 (71.30%), Postives = 88/108 (81.48%), Query Frame = 1


Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKVMTEQEARQ 60
           MAA++LA++IVMGSGI+ARA  QAYRQALANASK+GVA E  Q T++R   +  E EARQ
Sbjct: 1   MAARVLASVIVMGSGIIARACTQAYRQALANASKTGVAHEATQ-TIKRGLTI-GEAEARQ 60

Query: 61  ILGVTEETPWEEVAKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQ 109
           ILGVTE++ W+E+ KKYD LFERNAQ GSFYLQSKVHRAKE LET YQ
Sbjct: 61  ILGVTEKSSWDEILKKYDTLFERNAQNGSFYLQSKVHRAKECLETAYQ 106

[Close]

BLAST of Csa1G185100 vs. NCBI nr
Match: gi|449443552|ref|XP_004139541.1| (PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Cucumis sativus])

HSP 1 Score: 224.9 bits (572), Expect = 7.1e-56
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1


Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKVMTEQEARQ 60
           MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKVMTEQEARQ
Sbjct: 1   MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKVMTEQEARQ 60

Query: 61  ILGVTEETPWEEVAKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQNKGQDAPS 117
           ILGVTEETPWEEVAKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQNKGQDAPS
Sbjct: 61  ILGVTEETPWEEVAKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQNKGQDAPS 116

[Close]

BLAST of Csa1G185100 vs. NCBI nr
Match: gi|659127284|ref|XP_008463624.1| (PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Cucumis melo])

HSP 1 Score: 219.9 bits (559), Expect = 2.3e-54
Identity = 114/116 (98.28%), Postives = 114/116 (98.28%), Query Frame = 1


Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKVMTEQEARQ 60
           MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKVMTEQEARQ
Sbjct: 1   MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKVMTEQEARQ 60

Query: 61  ILGVTEETPWEEVAKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQNKGQDAPS 117
           ILGVTEETPWEEV KKYDALFERNAQTGSFYLQSKVHRAKERLETLYQ KGQDAPS
Sbjct: 61  ILGVTEETPWEEVVKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQIKGQDAPS 116

[Close]

BLAST of Csa1G185100 vs. NCBI nr
Match: gi|702433133|ref|XP_010069346.1| (PREDICTED: mitochondrial import inner membrane translocase subunit Tim16 [Eucalyptus grandis])

HSP 1 Score: 193.0 bits (489), Expect = 3.0e-46
Identity = 97/116 (83.62%), Postives = 106/116 (91.38%), Query Frame = 1


Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKVMTEQEARQ 60
           MAAKILANLIVMG GI+ARA VQAYRQALANASK+GVAQET+QNTVRRASK MTEQEARQ
Sbjct: 1   MAAKILANLIVMGGGIMARALVQAYRQALANASKTGVAQETLQNTVRRASKAMTEQEARQ 60

Query: 61  ILGVTEETPWEEVAKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQNKGQDAPS 117
           ILGVTEET WE++ KKYDALFERNA+ GSFY+QSKVHRAKE LE++YQ KGQ  PS
Sbjct: 61  ILGVTEETAWEDILKKYDALFERNAKNGSFYIQSKVHRAKECLESVYQGKGQSNPS 116

[Close]

BLAST of Csa1G185100 vs. NCBI nr
Match: gi|802559894|ref|XP_012066242.1| (PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas])

HSP 1 Score: 193.0 bits (489), Expect = 3.0e-46
Identity = 97/116 (83.62%), Postives = 106/116 (91.38%), Query Frame = 1


Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKVMTEQEARQ 60
           MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQET+QNT+R+ SKVMTEQEARQ
Sbjct: 1   MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETIQNTIRKGSKVMTEQEARQ 60

Query: 61  ILGVTEETPWEEVAKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQNKGQDAPS 117
           ILGVTEET WEE+ KKYD LFERNA+ GSFYLQSKVHRAKE LE +++ KG+  PS
Sbjct: 61  ILGVTEETAWEEIVKKYDTLFERNAKNGSFYLQSKVHRAKECLEAVHRGKGEGTPS 116

[Close]

BLAST of Csa1G185100 vs. NCBI nr
Match: gi|659106003|ref|XP_008453226.1| (PREDICTED: mitochondrial import inner membrane translocase subunit tim16-like isoform X1 [Cucumis melo])

HSP 1 Score: 192.2 bits (487), Expect = 5.1e-46
Identity = 97/116 (83.62%), Postives = 105/116 (90.52%), Query Frame = 1


Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKVMTEQEARQ 60
           MAAK+LA+LIV GS I+ RA  QAY+QAL NASKSGVAQET+QNTVRRASKVMTEQEARQ
Sbjct: 1   MAAKVLAHLIVSGSVIIGRAIAQAYQQALRNASKSGVAQETIQNTVRRASKVMTEQEARQ 60

Query: 61  ILGVTEETPWEEVAKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQNKGQDAPS 117
           ILGVTEE PWEE+ KKYD+LFERNAQTGSFYLQSKVHRAKERLETLY +K QD PS
Sbjct: 61  ILGVTEEMPWEEIVKKYDSLFERNAQTGSFYLQSKVHRAKERLETLYHSKDQDVPS 116

The following BLAST results are available for this feature:

BLAST of Csa1G185100 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TIM16_DANRE	6.7e-14	47.17	Mitochondrial import inner membrane translocase subunit tim16 OS=Danio rerio GN=...	[more]
TIM16_MOUSE	7.4e-13	43.48	Mitochondrial import inner membrane translocase subunit TIM16 OS=Mus musculus GN...	[more]
TIM16_HUMAN	9.7e-13	43.48	Mitochondrial import inner membrane translocase subunit TIM16 OS=Homo sapiens GN...	[more]
TI16B_XENLA	2.8e-12	46.73	Mitochondrial import inner membrane translocase subunit tim16-B OS=Xenopus laevi...	[more]
TIM16_SCHPO	3.7e-12	39.66	Mitochondrial import inner membrane translocase subunit tim16 OS=Schizosaccharom...	[more]

BLAST of Csa1G185100 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LW69_CUCSA	5.0e-56	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G185100 PE=4 SV=1	[more]
A0A059AV82_EUCGR	2.1e-46	83.62	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00433 PE=4 SV=1	[more]
A0A067LED2_JATCU	2.1e-46	83.62	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23812 PE=4 SV=1	[more]
A0A0A0LSD2_CUCSA	2.3e-45	81.90	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G011490 PE=4 SV=1	[more]
C6T494_SOYBN	1.1e-44	82.76	Putative uncharacterized protein OS=Glycine max PE=2 SV=1	[more]

BLAST of Csa1G185100 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G59280.1	5.6e-43	73.28	Protein Transporter, Pam16	[more]
AT5G61880.1	1.1e-35	71.30	Protein Transporter, Pam16	[more]

BLAST of Csa1G185100 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449443552\|ref\|XP_004139541.1\|	7.1e-56	100.00	PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Cucumi...	[more]
gi\|659127284\|ref\|XP_008463624.1\|	2.3e-54	98.28	PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Cucumi...	[more]
gi\|702433133\|ref\|XP_010069346.1\|	3.0e-46	83.62	PREDICTED: mitochondrial import inner membrane translocase subunit Tim16 [Eucaly...	[more]
gi\|802559894\|ref\|XP_012066242.1\|	3.0e-46	83.62	PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatrop...	[more]
gi\|659106003\|ref\|XP_008453226.1\|	5.1e-46	83.62	PREDICTED: mitochondrial import inner membrane translocase subunit tim16-like is...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005341	Tim16

Vocabulary: **Cellular Component**
Term	Definition
GO:0005744	mitochondrial inner membrane presequence translocase complex

Vocabulary: **Biological Process**
Term	Definition
GO:0030150	protein import into mitochondrial matrix

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030150	protein import into mitochondrial matrix
cellular_component	GO:0005744	mitochondrial inner membrane presequence translocase complex
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU086742	cucumber EST collection version 3.0	transcribed_cluster
CU160062	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G185100.1	Csa1G185100.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU086742	CU086742	transcribed_cluster
CU160062	CU160062	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005341	Mitochondrial import inner membrane translocase subunit Tim16	PANTHER	PTHR12388	MITOCHONDRIA ASSOCIATED GRANULOCYTE MACROPHAGE CSF SIGNALING MOLECULE	coord: 1..110 score: 5.1
None	No IPR available	PANTHER	PTHR12388:SF1	SUBFAMILY NOT NAMED	coord: 1..110 score: 5.1
None	No IPR available	PFAM	PF03656	Pam16	coord: 1..111 score: 8.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G185100	Cla009014	Watermelon (97103) v1	cuwmB051
Csa1G185100	MELO3C025561	Melon (DHL92) v3.5.1	cumeB029
Csa1G185100	ClCG01G010310	Watermelon (Charleston Gray)	cuwcgB022
Csa1G185100	Lsi02G011100	Bottle gourd (USVL1VR-Ls)	culsiB032
Csa1G185100	MELO3C025561.2	Melon (DHL92) v3.6.1	cumedB024
Csa1G185100	Cla97C01G010260	Watermelon (97103) v2	cuwmbB009
Csa1G185100	CSPI01G15930	Wild cucumber (PI 183967)	cpicuB000
Csa1G185100	CsGy1G015570	Cucumber (Gy14) v2	cgybcuB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G185100	Watermelon (97103) v2	cuwmbB005
Csa1G185100	Wax gourd	cuwgoB036
Csa1G185100	Wax gourd	cuwgoB058
Csa1G185100	Cucumber (Gy14) v1	cgycuB016
Csa1G185100	Cucurbita maxima (Rimu)	cmacuB210
Csa1G185100	Cucurbita moschata (Rifu)	cmocuB196
Csa1G185100	Watermelon (Charleston Gray)	cuwcgB019
Csa1G185100	Watermelon (97103) v1	cuwmB048
Csa1G185100	Cucurbita pepo (Zucchini)	cpecuB020
Csa1G185100	Cucurbita pepo (Zucchini)	cpecuB056
Csa1G185100	Cucurbita pepo (Zucchini)	cpecuB521
Csa1G185100	Bottle gourd (USVL1VR-Ls)	culsiB020
Csa1G185100	Bottle gourd (USVL1VR-Ls)	culsiB037
Csa1G185100	Cucumber (Gy14) v2	cgybcuB240
Csa1G185100	Silver-seed gourd	carcuB1051