CSPI01G14890 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G14890
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Protein FAF-like, chloroplastic
Location	Chr1 : 10541870 .. 10542679 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAAACACTGCAGAGACTGGATAGCCATGGCTGCCTGTGGAAGCCTGCAACACATTTTTGAAAACCCATTACCCGAAAATTCAACTCTCTTTGAACACCTCTCATCATGGAACCAGATAATGCCCTTGAAGCCGACCGAACCATCGTCATTTACAGAGATCTTTGGAGAGCTTCATTTCAAAGAGAGTTTCGTTCCCCATTCTTTTTCATCATTGTCGTCTTTGACAGAATCATCGAACTCTCCATCCGCTGTTGATGACATATGGAAAGAACCATCGTCAAATGGTGAACGTGAACCATCCAGCTTCCATAGGAAAAGCAATAGCTTCTCGTCGACCAATTCCGAAAGCTTGCAACTTTGCACAGAAGGGCTTGGATATGAAAGCTTAGATGATGTTGAGGATTTGAAAGGGGTGATGGATGAAAAGGAATGGCAGGAGGATGAAGAGGAAAGGACCTTAAAAAAACAGATTAATTATCCAAATTTGAAGCCTGGAATGATTAACAGGACAAAATTAGCAAATATGGAAGATTTTCCTCCACCAATTTCTTGTATGGGAAAGAGTGGAAAGCCTTGGGTAGGTTTCAAATCTTATAGGTATGGTGGAAGGTTTATATTGAAGGAAGTGAGAGTTCCCACCCACGAATTTCTACATGCTTCCAGAGAAAATGGACGTTTGAAACTGCATATTCTTGTACCAAATGAGCAGACCAGAGAAGGTGAGGATGAGGCCGACGACAACAACAAGAACTGTGAAAATACTATTGGGAAATGTAAGGTTGAAACTAGGCCATGATGAAATAAGAGGC

mRNA sequence

ATGGCTGCCTGTGGAAGCCTGCAACACATTTTTGAAAACCCATTACCCGAAAATTCAACTCTCTTTGAACACCTCTCATCATGGAACCAGATAATGCCCTTGAAGCCGACCGAACCATCGTCATTTACAGAGATCTTTGGAGAGCTTCATTTCAAAGAGAGTTTCGTTCCCCATTCTTTTTCATCATTGTCGTCTTTGACAGAATCATCGAACTCTCCATCCGCTGTTGATGACATATGGAAAGAACCATCGTCAAATGGTGAACGTGAACCATCCAGCTTCCATAGGAAAAGCAATAGCTTCTCGTCGACCAATTCCGAAAGCTTGCAACTTTGCACAGAAGGGCTTGGATATGAAAGCTTAGATGATGTTGAGGATTTGAAAGGGGTGATGGATGAAAAGGAATGGCAGGAGGATGAAGAGGAAAGGACCTTAAAAAAACAGATTAATTATCCAAATTTGAAGCCTGGAATGATTAACAGGACAAAATTAGCAAATATGGAAGATTTTCCTCCACCAATTTCTTGTATGGGAAAGAGTGGAAAGCCTTGGGTAGGTTTCAAATCTTATAGGTATGGTGGAAGGTTTATATTGAAGGAAGTGAGAGTTCCCACCCACGAATTTCTACATGCTTCCAGAGAAAATGGACGTTTGAAACTGCATATTCTTGTACCAAATGAGCAGACCAGAGAAGGTGAGGATGAGGCCGACGACAACAACAAGAACTGTGAAAATACTATTGGGAAATGTAAGGTTGAAACTAGGCCATGA

Coding sequence (CDS)

ATGGCTGCCTGTGGAAGCCTGCAACACATTTTTGAAAACCCATTACCCGAAAATTCAACTCTCTTTGAACACCTCTCATCATGGAACCAGATAATGCCCTTGAAGCCGACCGAACCATCGTCATTTACAGAGATCTTTGGAGAGCTTCATTTCAAAGAGAGTTTCGTTCCCCATTCTTTTTCATCATTGTCGTCTTTGACAGAATCATCGAACTCTCCATCCGCTGTTGATGACATATGGAAAGAACCATCGTCAAATGGTGAACGTGAACCATCCAGCTTCCATAGGAAAAGCAATAGCTTCTCGTCGACCAATTCCGAAAGCTTGCAACTTTGCACAGAAGGGCTTGGATATGAAAGCTTAGATGATGTTGAGGATTTGAAAGGGGTGATGGATGAAAAGGAATGGCAGGAGGATGAAGAGGAAAGGACCTTAAAAAAACAGATTAATTATCCAAATTTGAAGCCTGGAATGATTAACAGGACAAAATTAGCAAATATGGAAGATTTTCCTCCACCAATTTCTTGTATGGGAAAGAGTGGAAAGCCTTGGGTAGGTTTCAAATCTTATAGGTATGGTGGAAGGTTTATATTGAAGGAAGTGAGAGTTCCCACCCACGAATTTCTACATGCTTCCAGAGAAAATGGACGTTTGAAACTGCATATTCTTGTACCAAATGAGCAGACCAGAGAAGGTGAGGATGAGGCCGACGACAACAACAAGAACTGTGAAAATACTATTGGGAAATGTAAGGTTGAAACTAGGCCATGA

Homology

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BLAST of CSPI01G14890 vs. Swiss-Prot
Match: FAF3_ARATH (Protein FANTASTIC FOUR 3 OS=Arabidopsis thaliana GN=FAF3 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.6e-07
Identity = 53/182 (29.12%), Postives = 86/182 (47.25%), Query Frame = 1


Query: 60  FSSLSSLTESSNSPSAVDDIWKEPSSNGEREPSSFHRKSNSFSSTNSESLQLCTEGLGYE 119
           +SSL SL+  S+S +       + +++ E+E S + ++ +S  + + +SL LCTE LG E
Sbjct: 71  WSSLQSLSSGSSSST-------KTTTSSEKESSYYVQRPSSCRALSDQSLALCTENLGSE 130

Query: 120 SLDDVEDLK-----GVMDEKEWQEDEEERTLKKQINYPNLKPGMINRTKLANMEDFPPPI 179
           S  DV D+       V  +   +   E RTLK             +R +  +  D PPP+
Sbjct: 131 SGSDVTDIDELFSLDVQTKNLGETTTETRTLK-------------SRKRSVSPSDLPPPL 190

Query: 180 SCMGKSGKPWVGFKSYRYGGRFILKEVRVPTHE-FLHASRENGRLKLHILVPNEQTREGE 236
           + M   G   +  + +R  GR ++     P       A R NGRL+L IL  + +  E E
Sbjct: 191 TTM--RGFQCIQMRPHRENGRLVMTATNAPPRNGCFQADRSNGRLRLSILKDSNEFVENE 230

[Close]

BLAST of CSPI01G14890 vs. TrEMBL
Match: A0A0A0LVU3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G166760 PE=4 SV=1)

HSP 1 Score: 521.5 bits (1342), Expect = 5.6e-145
Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 1


Query: 1   MAACGSLQHIFENPLPENSTLFEHLSSWNQIMPLKPTEPSSFTEIFGELHFKESFVPHSF 60
           MAACGSLQHIFENPLPENSTLFEHLSSWNQIMPLKPTEPSSFTEIFGELHFKESFVPHSF
Sbjct: 1   MAACGSLQHIFENPLPENSTLFEHLSSWNQIMPLKPTEPSSFTEIFGELHFKESFVPHSF 60

Query: 61  SSLSSLTESSNSPSAVDDIWKEPSSNGEREPSSFHRKSNSFSSTNSESLQLCTEGLGYES 120
           SSLSSLTESSNSPSAVDDIWKEPSSNGEREPSSFHRKSNSFSSTNSESLQLCTEGLGYES
Sbjct: 61  SSLSSLTESSNSPSAVDDIWKEPSSNGEREPSSFHRKSNSFSSTNSESLQLCTEGLGYES 120

Query: 121 LDDVEDLKGVMDEKEWQEDEEERTLKKQINYPNLKPGMINRTKLANMEDFPPPISCMGKS 180
           LDDVEDLKGVMDEKEWQEDEEERTLKKQINYPNLKPGMINRTKLANMEDFPPPISCMGKS
Sbjct: 121 LDDVEDLKGVMDEKEWQEDEEERTLKKQINYPNLKPGMINRTKLANMEDFPPPISCMGKS 180

Query: 181 GKPWVGFKSYRYGGRFILKEVRVPTHEFLHASRENGRLKLHILVPNEQTREGEDEADDNN 240
           GKPWVGFKSYRYGGRFILKEVRVPTHEFLHASRENGRLKLHILVPNEQTREGEDEADDNN
Sbjct: 181 GKPWVGFKSYRYGGRFILKEVRVPTHEFLHASRENGRLKLHILVPNEQTREGEDEADDNN 240

Query: 241 KNCENTIGKCKVETRP 257
           KNCENTIGKCKVETRP
Sbjct: 241 KNCENTIGKCKVETRP 256

[Close]

BLAST of CSPI01G14890 vs. TrEMBL
Match: B9SCV3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1281760 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 8.3e-56
Identity = 138/287 (48.08%), Postives = 173/287 (60.28%), Query Frame = 1


Query: 1   MAACGSLQHIFENPLPENSTLFEHLSSWNQIMPLKPTEPSSFTEIFGELHFKESFVPHSF 60
           MAACGSLQHIFE PLPE  TL E LSSWN I  +KP E SSFTEIFGELHFKE+    S 
Sbjct: 1   MAACGSLQHIFEKPLPETPTLLESLSSWNPIKTIKPIEQSSFTEIFGELHFKENSESSSS 60

Query: 61  S---SLSSLTESSNSPSAVDDIWKEPSSNGEREPS------------------------- 120
           S    + S + SS S S +  I +  +SN  R  S                         
Sbjct: 61  SPSFPIPSFSSSSPSSSFIGLIPEAETSNLNRNDSFDSGCHTKKSTSLDSLLSTPKNYQY 120

Query: 121 -SFHRKSNSFSSTNSESLQLCTEGLGYESLDDVEDLKGVMDEKEWQEDEEERTLKKQINY 180
              HR  +SFS  N ESLQLCTEGLG+ES DDVEDLK  M+E    ++E+    +  +  
Sbjct: 121 AGCHRNGDSFSPRNYESLQLCTEGLGFESFDDVEDLKNDMNENRQHQEEKAGITRHSV-- 180

Query: 181 PNLKPGMINRTKLANMEDFPPPISCMGKSGKPWVGFKSYRYGGRFILKEVRVPTHEFLHA 240
              + G I R++L  +  FPPPISC+GKSGKPWV FKSYR+ GRF+LK+VR+P+ EFLHA
Sbjct: 181 LESQAGEIRRSRL-RIGAFPPPISCIGKSGKPWVSFKSYRHDGRFVLKQVRIPSQEFLHA 240

Query: 241 SRENGRLKLHILVPNE---QTREGEDE--ADDNNKNCENTIGKCKVE 254
            RE+GRLKLH + PN+   +  EGE+E   +D+ +     IG  +V+
Sbjct: 241 HREDGRLKLHFVQPNDGIHEEEEGEEENFTEDDEQEENEEIGNKEVQ 284

[Close]

BLAST of CSPI01G14890 vs. TrEMBL
Match: F6HHF4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0080g00570 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.1e-55
Identity = 140/289 (48.44%), Postives = 173/289 (59.86%), Query Frame = 1


Query: 1   MAACGSLQHIFENPLPENSTLFEHLSSWNQIMPLKPTEPSSFTEIFGELHFKE------- 60
           MAACGSLQHIFE PLPEN TL + LSSWNQI  +KP E  SFTEIFGELHFKE       
Sbjct: 1   MAACGSLQHIFEKPLPENPTLMDTLSSWNQIKSMKPPEQPSFTEIFGELHFKENSELLSS 60

Query: 61  -----SFVPHSFSSLSSLTESSNSPSAVD----------DIW--KEPSSNGEREP-SSFH 120
                S  P + SS SSL+ +S++ S +D          + W  K   + G   P  S H
Sbjct: 61  SSYLSSPHPPTSSSSSSLSSTSSTSSLIDFNPQLRIEKNENWGEKGEENKGPLNPYVSRH 120

Query: 121 RKSNSFSSTNSESLQLCTEGLGYESLDDVEDLKG-VMDEKEWQEDEEERTLKKQINYPNL 180
           R S+SFSS  SESLQLCTEGLG+ES DDVED+   + D+ E QE+   R   ++  Y   
Sbjct: 121 RNSDSFSSMKSESLQLCTEGLGFESCDDVEDVHNEIKDDWENQEERVTRHSPRENAYTEF 180

Query: 181 KPGMINRTKLANMEDFPPPISCMGKSGKPWVGFKSYRYGGRFILKEVRVPTHEFLHASRE 240
                 R        FPPPISC+GKSGKPWV FKSYR+ GRF+LKE+R+P  E LHA RE
Sbjct: 181 ------RRSRTQGGAFPPPISCIGKSGKPWVSFKSYRHDGRFVLKEIRIPNQELLHACRE 240

Query: 241 NGRLKLHILVPNE----------QTREGEDEADDNNKNCENTIGKCKVE 254
           +GRLKLH + P+E          +  + EDE DDN++   +  G+ + E
Sbjct: 241 DGRLKLHFVQPDEILEEDEEQDVEDTDNEDEYDDNDEEDNDENGEHEAE 283

[Close]

BLAST of CSPI01G14890 vs. TrEMBL
Match: A0A067KDV5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12692 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 7.1e-55
Identity = 136/275 (49.45%), Postives = 174/275 (63.27%), Query Frame = 1


Query: 1   MAACGSLQHIFENPLPEN-STLFEHLSSWNQIMPLKPTEPSSFTEIFGELHFKE------ 60
           MAACGSLQHIFE PL +  +TL E LSSWNQI P+KP E SSFTEIFGELHF+E      
Sbjct: 1   MAACGSLQHIFEKPLSQTPATLLESLSSWNQIKPVKPIEQSSFTEIFGELHFEENSQSTS 60

Query: 61  ---SFVPHSFSSLSSLTESSNSPSAVDDIWKEPSSNGERE----PS-------------- 120
              SF   SFSS SS        +A  +I K  + + + +    PS              
Sbjct: 61  SPPSFPVSSFSSASSSFIDIIPRAAPSNINKNDNIDNQNDNKKIPSLDFFSATPKNHQYT 120

Query: 121 SFHRKSNSFSSTNSESLQLCTEGLGYESLDDVEDLKGVMDEKEWQEDEEERTLKKQINYP 180
            FH+  +SFS  N E+LQLCTEGLG+ESLDDVEDLK  ++E +WQ  E++ +  +     
Sbjct: 121 GFHKNGDSFSPRNYENLQLCTEGLGFESLDDVEDLKNDINE-DWQHQEDKVSFTRHSALE 180

Query: 181 NLKPGMINRTKLANMEDFPPPISCMGKSGKPWVGFKSYRYGGRFILKEVRVPTHEFLHAS 240
           N + G I R++ +    FPPPISC+GKSGKPWV FKSYR+ GRF+LK++  P+ EFLHA 
Sbjct: 181 N-QSGEIRRSRSSGRA-FPPPISCIGKSGKPWVSFKSYRHDGRFVLKQILTPSQEFLHAH 240

Query: 241 RENGRLKLHILVPNEQTREGEDEADD--NNKNCEN 246
           RENGRLKLH++ P ++  E EDE ++    +N EN
Sbjct: 241 RENGRLKLHLVQPRDEILEEEDEDEEVVEEENEEN 272

[Close]

BLAST of CSPI01G14890 vs. TrEMBL
Match: A0A061GV87_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_041386 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.6e-54
Identity = 147/303 (48.51%), Postives = 173/303 (57.10%), Query Frame = 1


Query: 1   MAACGSLQHIFENPLPENSTLFEHLSSWNQIMP-LKPTEPSSFTEIFGELHFKE------ 60
           MAACGSLQHIFENPLPEN TL E LSSWNQI P +KP EPSSFTEIFGELHFKE      
Sbjct: 1   MAACGSLQHIFENPLPENPTLLESLSSWNQIKPAIKPIEPSSFTEIFGELHFKENSKSSS 60

Query: 61  --SFVPHSFSSLSSLTESSNSPS---AVDDIWKEPSSNGERE------PSS--FHRKSNS 120
             SF    FSS S +  S  + +   + +D + E   N  R       PS+    + +N 
Sbjct: 61  ASSFPISPFSSTSIIDLSPQNSAFKLSKNDTFNENDENNNRSSPPEIFPSTPEITKYTNC 120

Query: 121 FSST-----NSESLQLCTEGLGYESLDDVEDLKGVMDEKEWQEDEEERTLKKQINYPNLK 180
              +     NSESLQLCTEGLG+ES DDVEDLK  M E  WQ  EE             K
Sbjct: 121 HKKSESFSWNSESLQLCTEGLGFESSDDVEDLKNEMKE-GWQSKEE-------------K 180

Query: 181 PGMINRTKLANMED--------------FPPPISCMGKSGKPWVGFKSYRYGGRFILKEV 240
              IN TK    E+              FPPPISC+GKSGKPWV FKSYR  GRF+LKEV
Sbjct: 181 ESSINTTKHTTTENLCGEFRRPRTRGGAFPPPISCIGKSGKPWVCFKSYRQDGRFVLKEV 240

Query: 241 RVPTHEFLHASRENGRLKLHILVPN---------EQTREGEDEADDNNKNCENTIGKCKV 256
           R+PT EFLHA RE+GRLKLH + P          E+  E EDE +D  +    +I + K 
Sbjct: 241 RIPTQEFLHACREDGRLKLHFVQPEDEILEEEGFEEEEEEEDELEDLEEGTHGSIDEDKE 289

[Close]

BLAST of CSPI01G14890 vs. TAIR10
Match: AT5G22390.1 (AT5G22390.1 Protein of unknown function (DUF3049))

HSP 1 Score: 80.1 bits (196), Expect = 2.2e-15
Identity = 78/252 (30.95%), Postives = 114/252 (45.24%), Query Frame = 1


Query: 1   MAACGSLQHIFENPLPENS--TLFEHLSS---WNQIMPLKPTE-----PSSFTEIFGELH 60
           MAA GS   IF+NP  +NS  +  + LSS   WN    L  T      P  FTEIFGELH
Sbjct: 1   MAAYGSFHRIFDNPRQDNSPKSFLDTLSSSSPWNPSKGLHVTTHHDETPPPFTEIFGELH 60

Query: 61  FKESFVPHSFSSLSSLTESSNSPSAVDDIWKEPSSNGEREPSSFHRKSNSFSSTNSESLQ 120
           F+ES   HS    +S  E+S+     + +  E     E E      K N     + + ++
Sbjct: 61  FRES--SHSSYEKTS-AENSSLQLCTEGLGSESYYGLEDE------KVNGDGDGDDDEIE 120

Query: 121 LCTEGLGYESLDDVEDLKGVMDEKEWQEDEEERTLKKQINYPNLKPGMINRTKLANMEDF 180
           +  +              G  DE+EW+   +ER                        +++
Sbjct: 121 VKGKD------------NGSNDEEEWEPRRKER------------------------KEY 180

Query: 181 PPPISCMGKSGKPWVGFKSYRYGGRFILKEVRVPTHEFLHASRENGRLKLHILVPNEQTR 240
           PP ++ M         FK+YR  GR +L+EVR+P  EFL ASRE+GRL+L ++ P +   
Sbjct: 181 PPAMTRM--------SFKTYRKEGRLVLEEVRIPRREFLRASREDGRLRLKLVQPEDD-- 195

Query: 241 EGEDEADDNNKN 243
              DE ++N K+
Sbjct: 241 --HDEEEENEKD 195

[Close]

BLAST of CSPI01G14890 vs. TAIR10
Match: AT5G19260.1 (AT5G19260.1 Protein of unknown function (DUF3049))

HSP 1 Score: 58.2 bits (139), Expect = 8.9e-09
Identity = 53/182 (29.12%), Postives = 86/182 (47.25%), Query Frame = 1


Query: 60  FSSLSSLTESSNSPSAVDDIWKEPSSNGEREPSSFHRKSNSFSSTNSESLQLCTEGLGYE 119
           +SSL SL+  S+S +       + +++ E+E S + ++ +S  + + +SL LCTE LG E
Sbjct: 71  WSSLQSLSSGSSSST-------KTTTSSEKESSYYVQRPSSCRALSDQSLALCTENLGSE 130

Query: 120 SLDDVEDLK-----GVMDEKEWQEDEEERTLKKQINYPNLKPGMINRTKLANMEDFPPPI 179
           S  DV D+       V  +   +   E RTLK             +R +  +  D PPP+
Sbjct: 131 SGSDVTDIDELFSLDVQTKNLGETTTETRTLK-------------SRKRSVSPSDLPPPL 190

Query: 180 SCMGKSGKPWVGFKSYRYGGRFILKEVRVPTHE-FLHASRENGRLKLHILVPNEQTREGE 236
           + M   G   +  + +R  GR ++     P       A R NGRL+L IL  + +  E E
Sbjct: 191 TTM--RGFQCIQMRPHRENGRLVMTATNAPPRNGCFQADRSNGRLRLSILKDSNEFVENE 230

[Close]

BLAST of CSPI01G14890 vs. NCBI nr
Match: gi|449443640|ref|XP_004139585.1| (PREDICTED: protein FAF-like, chloroplastic [Cucumis sativus])

HSP 1 Score: 521.5 bits (1342), Expect = 8.1e-145
Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 1


Query: 1   MAACGSLQHIFENPLPENSTLFEHLSSWNQIMPLKPTEPSSFTEIFGELHFKESFVPHSF 60
           MAACGSLQHIFENPLPENSTLFEHLSSWNQIMPLKPTEPSSFTEIFGELHFKESFVPHSF
Sbjct: 1   MAACGSLQHIFENPLPENSTLFEHLSSWNQIMPLKPTEPSSFTEIFGELHFKESFVPHSF 60

Query: 61  SSLSSLTESSNSPSAVDDIWKEPSSNGEREPSSFHRKSNSFSSTNSESLQLCTEGLGYES 120
           SSLSSLTESSNSPSAVDDIWKEPSSNGEREPSSFHRKSNSFSSTNSESLQLCTEGLGYES
Sbjct: 61  SSLSSLTESSNSPSAVDDIWKEPSSNGEREPSSFHRKSNSFSSTNSESLQLCTEGLGYES 120

Query: 121 LDDVEDLKGVMDEKEWQEDEEERTLKKQINYPNLKPGMINRTKLANMEDFPPPISCMGKS 180
           LDDVEDLKGVMDEKEWQEDEEERTLKKQINYPNLKPGMINRTKLANMEDFPPPISCMGKS
Sbjct: 121 LDDVEDLKGVMDEKEWQEDEEERTLKKQINYPNLKPGMINRTKLANMEDFPPPISCMGKS 180

Query: 181 GKPWVGFKSYRYGGRFILKEVRVPTHEFLHASRENGRLKLHILVPNEQTREGEDEADDNN 240
           GKPWVGFKSYRYGGRFILKEVRVPTHEFLHASRENGRLKLHILVPNEQTREGEDEADDNN
Sbjct: 181 GKPWVGFKSYRYGGRFILKEVRVPTHEFLHASRENGRLKLHILVPNEQTREGEDEADDNN 240

Query: 241 KNCENTIGKCKVETRP 257
           KNCENTIGKCKVETRP
Sbjct: 241 KNCENTIGKCKVETRP 256

[Close]

BLAST of CSPI01G14890 vs. NCBI nr
Match: gi|659071648|ref|XP_008461212.1| (PREDICTED: protein FANTASTIC FOUR 4-like [Cucumis melo])

HSP 1 Score: 494.2 bits (1271), Expect = 1.4e-136
Identity = 244/257 (94.94%), Postives = 249/257 (96.89%), Query Frame = 1


Query: 1   MAACGSLQHIFENPLPENSTLFEHLSSWNQIMPLKPTEPSSFTEIFGELHFKESFVPHSF 60
           MAACGSLQHIFENPLPEN TL EHLSSWNQIMPLKPTEPSSFTEIFGELHFKESFVPHSF
Sbjct: 1   MAACGSLQHIFENPLPENPTLLEHLSSWNQIMPLKPTEPSSFTEIFGELHFKESFVPHSF 60

Query: 61  SSLSSLTESSNSPSAVDDIWKEPSSNGEREPSSFHRKSNSFSSTNSESLQLCTEGLGYES 120
           SSLSSLTESSNS SA DD+WKEP SNGEREPS+FHRKSNSFSSTNSESLQLCTEGLGYES
Sbjct: 61  SSLSSLTESSNSTSAADDLWKEPLSNGEREPSNFHRKSNSFSSTNSESLQLCTEGLGYES 120

Query: 121 LDDVEDLKGVMDEKEW-QEDEEERTLKKQINYPNLKPGMINRTKLANMEDFPPPISCMGK 180
           LDDVEDLKGVMDEKEW +EDEEERTLKKQI YPNLKPGMINRTK ANMEDFPPPISCMGK
Sbjct: 121 LDDVEDLKGVMDEKEWPKEDEEERTLKKQIQYPNLKPGMINRTKSANMEDFPPPISCMGK 180

Query: 181 SGKPWVGFKSYRYGGRFILKEVRVPTHEFLHASRENGRLKLHILVPNEQTREGEDEADDN 240
           SGKPWVGFKSYRYGGRFILKEVRVPTHEFLHASRENGRLKLHILVPNEQTREGEDEADDN
Sbjct: 181 SGKPWVGFKSYRYGGRFILKEVRVPTHEFLHASRENGRLKLHILVPNEQTREGEDEADDN 240

Query: 241 NKNCENTIGKCKVETRP 257
           ++NCENTIGKCKVETRP
Sbjct: 241 HENCENTIGKCKVETRP 257

[Close]

BLAST of CSPI01G14890 vs. NCBI nr
Match: gi|255565665|ref|XP_002523822.1| (PREDICTED: protein FAF-like, chloroplastic [Ricinus communis])

HSP 1 Score: 225.3 bits (573), Expect = 1.2e-55
Identity = 138/287 (48.08%), Postives = 173/287 (60.28%), Query Frame = 1


Query: 1   MAACGSLQHIFENPLPENSTLFEHLSSWNQIMPLKPTEPSSFTEIFGELHFKESFVPHSF 60
           MAACGSLQHIFE PLPE  TL E LSSWN I  +KP E SSFTEIFGELHFKE+    S 
Sbjct: 1   MAACGSLQHIFEKPLPETPTLLESLSSWNPIKTIKPIEQSSFTEIFGELHFKENSESSSS 60

Query: 61  S---SLSSLTESSNSPSAVDDIWKEPSSNGEREPS------------------------- 120
           S    + S + SS S S +  I +  +SN  R  S                         
Sbjct: 61  SPSFPIPSFSSSSPSSSFIGLIPEAETSNLNRNDSFDSGCHTKKSTSLDSLLSTPKNYQY 120

Query: 121 -SFHRKSNSFSSTNSESLQLCTEGLGYESLDDVEDLKGVMDEKEWQEDEEERTLKKQINY 180
              HR  +SFS  N ESLQLCTEGLG+ES DDVEDLK  M+E    ++E+    +  +  
Sbjct: 121 AGCHRNGDSFSPRNYESLQLCTEGLGFESFDDVEDLKNDMNENRQHQEEKAGITRHSV-- 180

Query: 181 PNLKPGMINRTKLANMEDFPPPISCMGKSGKPWVGFKSYRYGGRFILKEVRVPTHEFLHA 240
              + G I R++L  +  FPPPISC+GKSGKPWV FKSYR+ GRF+LK+VR+P+ EFLHA
Sbjct: 181 LESQAGEIRRSRL-RIGAFPPPISCIGKSGKPWVSFKSYRHDGRFVLKQVRIPSQEFLHA 240

Query: 241 SRENGRLKLHILVPNE---QTREGEDE--ADDNNKNCENTIGKCKVE 254
            RE+GRLKLH + PN+   +  EGE+E   +D+ +     IG  +V+
Sbjct: 241 HREDGRLKLHFVQPNDGIHEEEEGEEENFTEDDEQEENEEIGNKEVQ 284

[Close]

BLAST of CSPI01G14890 vs. NCBI nr
Match: gi|731394549|ref|XP_010651876.1| (PREDICTED: suppressor protein SRP40 [Vitis vinifera])

HSP 1 Score: 224.9 bits (572), Expect = 1.6e-55
Identity = 140/289 (48.44%), Postives = 173/289 (59.86%), Query Frame = 1


Query: 1   MAACGSLQHIFENPLPENSTLFEHLSSWNQIMPLKPTEPSSFTEIFGELHFKE------- 60
           MAACGSLQHIFE PLPEN TL + LSSWNQI  +KP E  SFTEIFGELHFKE       
Sbjct: 1   MAACGSLQHIFEKPLPENPTLMDTLSSWNQIKSMKPPEQPSFTEIFGELHFKENSELLSS 60

Query: 61  -----SFVPHSFSSLSSLTESSNSPSAVD----------DIW--KEPSSNGEREP-SSFH 120
                S  P + SS SSL+ +S++ S +D          + W  K   + G   P  S H
Sbjct: 61  SSYLSSPHPPTSSSSSSLSSTSSTSSLIDFNPQLRIEKNENWGEKGEENKGPLNPYVSRH 120

Query: 121 RKSNSFSSTNSESLQLCTEGLGYESLDDVEDLKG-VMDEKEWQEDEEERTLKKQINYPNL 180
           R S+SFSS  SESLQLCTEGLG+ES DDVED+   + D+ E QE+   R   ++  Y   
Sbjct: 121 RNSDSFSSMKSESLQLCTEGLGFESCDDVEDVHNEIKDDWENQEERVTRHSPRENAYTEF 180

Query: 181 KPGMINRTKLANMEDFPPPISCMGKSGKPWVGFKSYRYGGRFILKEVRVPTHEFLHASRE 240
                 R        FPPPISC+GKSGKPWV FKSYR+ GRF+LKE+R+P  E LHA RE
Sbjct: 181 ------RRSRTQGGAFPPPISCIGKSGKPWVSFKSYRHDGRFVLKEIRIPNQELLHACRE 240

Query: 241 NGRLKLHILVPNE----------QTREGEDEADDNNKNCENTIGKCKVE 254
           +GRLKLH + P+E          +  + EDE DDN++   +  G+ + E
Sbjct: 241 DGRLKLHFVQPDEILEEDEEQDVEDTDNEDEYDDNDEEDNDENGEHEAE 283

[Close]

BLAST of CSPI01G14890 vs. NCBI nr
Match: gi|802621744|ref|XP_012076118.1| (PREDICTED: protein FANTASTIC FOUR 1 [Jatropha curcas])

HSP 1 Score: 222.2 bits (565), Expect = 1.0e-54
Identity = 136/275 (49.45%), Postives = 174/275 (63.27%), Query Frame = 1


Query: 1   MAACGSLQHIFENPLPEN-STLFEHLSSWNQIMPLKPTEPSSFTEIFGELHFKE------ 60
           MAACGSLQHIFE PL +  +TL E LSSWNQI P+KP E SSFTEIFGELHF+E      
Sbjct: 1   MAACGSLQHIFEKPLSQTPATLLESLSSWNQIKPVKPIEQSSFTEIFGELHFEENSQSTS 60

Query: 61  ---SFVPHSFSSLSSLTESSNSPSAVDDIWKEPSSNGERE----PS-------------- 120
              SF   SFSS SS        +A  +I K  + + + +    PS              
Sbjct: 61  SPPSFPVSSFSSASSSFIDIIPRAAPSNINKNDNIDNQNDNKKIPSLDFFSATPKNHQYT 120

Query: 121 SFHRKSNSFSSTNSESLQLCTEGLGYESLDDVEDLKGVMDEKEWQEDEEERTLKKQINYP 180
            FH+  +SFS  N E+LQLCTEGLG+ESLDDVEDLK  ++E +WQ  E++ +  +     
Sbjct: 121 GFHKNGDSFSPRNYENLQLCTEGLGFESLDDVEDLKNDINE-DWQHQEDKVSFTRHSALE 180

Query: 181 NLKPGMINRTKLANMEDFPPPISCMGKSGKPWVGFKSYRYGGRFILKEVRVPTHEFLHAS 240
           N + G I R++ +    FPPPISC+GKSGKPWV FKSYR+ GRF+LK++  P+ EFLHA 
Sbjct: 181 N-QSGEIRRSRSSGRA-FPPPISCIGKSGKPWVSFKSYRHDGRFVLKQILTPSQEFLHAH 240

Query: 241 RENGRLKLHILVPNEQTREGEDEADD--NNKNCEN 246
           RENGRLKLH++ P ++  E EDE ++    +N EN
Sbjct: 241 RENGRLKLHLVQPRDEILEEEDEDEEVVEEENEEN 272

The following BLAST results are available for this feature:

BLAST of CSPI01G14890 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FAF3_ARATH	1.6e-07	29.12	Protein FANTASTIC FOUR 3 OS=Arabidopsis thaliana GN=FAF3 PE=2 SV=1	[more]

BLAST of CSPI01G14890 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVU3_CUCSA	5.6e-145	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G166760 PE=4 SV=1	[more]
B9SCV3_RICCO	8.3e-56	48.08	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1281760 PE=4 SV=1	[more]
F6HHF4_VITVI	1.1e-55	48.44	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0080g00570 PE=4 SV=...	[more]
A0A067KDV5_JATCU	7.1e-55	49.45	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12692 PE=4 SV=1	[more]
A0A061GV87_THECC	1.6e-54	48.51	Uncharacterized protein OS=Theobroma cacao GN=TCM_041386 PE=4 SV=1	[more]

BLAST of CSPI01G14890 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G22390.1	2.2e-15	30.95	Protein of unknown function (DUF3049)	[more]
AT5G19260.1	8.9e-09	29.12	Protein of unknown function (DUF3049)	[more]

BLAST of CSPI01G14890 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449443640\|ref\|XP_004139585.1\|	8.1e-145	100.00	PREDICTED: protein FAF-like, chloroplastic [Cucumis sativus]	[more]
gi\|659071648\|ref\|XP_008461212.1\|	1.4e-136	94.94	PREDICTED: protein FANTASTIC FOUR 4-like [Cucumis melo]	[more]
gi\|255565665\|ref\|XP_002523822.1\|	1.2e-55	48.08	PREDICTED: protein FAF-like, chloroplastic [Ricinus communis]	[more]
gi\|731394549\|ref\|XP_010651876.1\|	1.6e-55	48.44	PREDICTED: suppressor protein SRP40 [Vitis vinifera]	[more]
gi\|802621744\|ref\|XP_012076118.1\|	1.0e-54	49.45	PREDICTED: protein FANTASTIC FOUR 1 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021410	FAF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G14890.1	CSPI01G14890.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021410	The fantastic four family	PFAM	PF11250	FAF	coord: 170..221 score: 2.9
None	No IPR available	PANTHER	PTHR33155	FAMILY NOT NAMED	coord: 1..240 score: 8.9
None	No IPR available	PANTHER	PTHR33155:SF9	SUBFAMILY NOT NAMED	coord: 1..240 score: 8.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G14890	Cla008637	Watermelon (97103) v1	cpiwmB070
CSPI01G14890	Csa1G166760	Cucumber (Chinese Long) v2	cpicuB000
CSPI01G14890	MELO3C004685	Melon (DHL92) v3.5.1	cpimeB011
CSPI01G14890	ClCG01G012170	Watermelon (Charleston Gray)	cpiwcgB019
CSPI01G14890	ClCG02G022240	Watermelon (Charleston Gray)	cpiwcgB031
CSPI01G14890	Lsi03G001260	Bottle gourd (USVL1VR-Ls)	cpilsiB048
CSPI01G14890	MELO3C004685.2	Melon (DHL92) v3.6.1	cpimedB011
CSPI01G14890	CsaV3_1G015000	Cucumber (Chinese Long) v3	cpicucB001
CSPI01G14890	CsaV3_1G015910	Cucumber (Chinese Long) v3	cpicucB006
CSPI01G14890	Cla97C01G011530	Watermelon (97103) v2	cpiwmbB007
CSPI01G14890	Cla97C02G048340	Watermelon (97103) v2	cpiwmbB026
CSPI01G14890	Bhi08G000032	Wax gourd	cpiwgoB049
CSPI01G14890	Cucsa.319780	Cucumber (Gy14) v1	cgycpiB482
CSPI01G14890	CmaCh18G006510	Cucurbita maxima (Rimu)	cmacpiB403
CSPI01G14890	CsGy1G014700	Cucumber (Gy14) v2	cgybcpiB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G14890	Cucurbita pepo (Zucchini)	cpecpiB017
CSPI01G14890	Bottle gourd (USVL1VR-Ls)	cpilsiB006
CSPI01G14890	Bottle gourd (USVL1VR-Ls)	cpilsiB020
CSPI01G14890	Melon (DHL92) v3.6.1	cpimedB061
CSPI01G14890	Melon (DHL92) v3.6.1	cpimedB077
CSPI01G14890	Silver-seed gourd	carcpiB0000
CSPI01G14890	Cucumber (Chinese Long) v3	cpicucB030
CSPI01G14890	Watermelon (97103) v2	cpiwmbB009
CSPI01G14890	Watermelon (97103) v2	cpiwmbB018
CSPI01G14890	Wild cucumber (PI 183967)	cpicpiB015
CSPI01G14890	Cucumber (Gy14) v1	cgycpiB358
CSPI01G14890	Cucurbita moschata (Rifu)	cmocpiB386
CSPI01G14890	Cucurbita moschata (Rifu)	cmocpiB810
CSPI01G14890	Melon (DHL92) v3.5.1	cpimeB067
CSPI01G14890	Watermelon (97103) v1	cpiwmB008
CSPI01G14890	Watermelon (97103) v1	cpiwmB044
CSPI01G14890	Watermelon (97103) v1	cpiwmB060