CSPI01G13120 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G13120
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 8577718 .. 8578128 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAGGGAAATGAATGGGAGAGGAAGAGGAAGAGGAAAAGAGAGAGCCGAGAGGTAATTCAGTGAAGGCCGAAAGTCTAAGTCATTTTTTTGTAGGAAGGTTATTGAGAATGGCGAGAGGCATTGTTTTTTTGTGGGAAGGGATGAGAATGGGGAGAGCAAGTGGGGGGAAGAGATGAGGATTGAAGAAGGTGTTAAAGGGGATGGGCGAGTGTGTTGAAAGACTCGCCCTCTTTCTTCACGCATGGCAGAAGGCAAATTTGAAAGTGTGGATATATGCATGCATGACATTTATCTGAAGGTGCATGCATGGCAGAAGGCATCTGAAAATCTGAAAAGTTTGGGGAAGGGTGAGTCTCCTCTTTTGATACACATCCTCCATCCAATAATGGCTTCTGCGGCCTTCTGA

mRNA sequence

ATGAGAAGGGAAATGAATGGGAGAGGAAGAGGAAGAGGAAAAGAGAGAGCCGAGAGGGATGAGAATGGGGAGAGCAAGTGGGGGGAAGAGATGAGGATTGAAGAAGGTGTTAAAGGGGATGGGCGAAAGGCATCTGAAAATCTGAAAAGTTTGGGGAAGGGTGAGTCTCCTCTTTTGATACACATCCTCCATCCAATAATGGCTTCTGCGGCCTTCTGA

Coding sequence (CDS)

ATGAGAAGGGAAATGAATGGGAGAGGAAGAGGAAGAGGAAAAGAGAGAGCCGAGAGGGATGAGAATGGGGAGAGCAAGTGGGGGGAAGAGATGAGGATTGAAGAAGGTGTTAAAGGGGATGGGCGAAAGGCATCTGAAAATCTGAAAAGTTTGGGGAAGGGTGAGTCTCCTCTTTTGATACACATCCTCCATCCAATAATGGCTTCTGCGGCCTTCTGA
Homology
[Close]
BLAST of CSPI01G13120 vs. TrEMBL
Match: A0A0A0LSL6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G097640 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 2.5e-29
Identity = 70/72 (97.22%), Postives = 72/72 (100.00%), Query Frame = 1 

Query: 1  MRREMNGRGRGRGKERAERDENGESKWGEEMRIEEGVKGDGRKASENLKSLGKGESPLLI 60
          MRREMNGRGRGRGKERAERDENGES+WGEEMRIEEGVKGDGRKASENLKSLGKGESPLLI
Sbjct: 1  MRREMNGRGRGRGKERAERDENGESRWGEEMRIEEGVKGDGRKASENLKSLGKGESPLLI 60

Query: 61 HILHPIMASAAF 73
          H+LHPIMASAAF
Sbjct: 61 HMLHPIMASAAF 72

[Close]
BLAST of CSPI01G13120 vs. NCBI nr
Match: gi|700209687|gb|KGN64783.1| (hypothetical protein Csa_1G097640 [Cucumis sativus])

HSP 1 Score: 135.6 bits (340), Expect = 3.5e-29
Identity = 70/72 (97.22%), Postives = 72/72 (100.00%), Query Frame = 1 

Query: 1  MRREMNGRGRGRGKERAERDENGESKWGEEMRIEEGVKGDGRKASENLKSLGKGESPLLI 60
          MRREMNGRGRGRGKERAERDENGES+WGEEMRIEEGVKGDGRKASENLKSLGKGESPLLI
Sbjct: 1  MRREMNGRGRGRGKERAERDENGESRWGEEMRIEEGVKGDGRKASENLKSLGKGESPLLI 60

Query: 61 HILHPIMASAAF 73
          H+LHPIMASAAF
Sbjct: 61 HMLHPIMASAAF 72

The following BLAST results are available for this feature:
BLAST of CSPI01G13120 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G13120 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSL6_CUCSA2.5e-2997.22Uncharacterized protein OS=Cucumis sativus GN=Csa_1G097640 PE=4 SV=1[more]
BLAST of CSPI01G13120 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G13120 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209687|gb|KGN64783.1|3.5e-2997.22hypothetical protein Csa_1G097640 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G13120.1CSPI01G13120.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G13120Csa1G097640Cucumber (Chinese Long) v2cpicuB000
CSPI01G13120CsaV3_1G013290Cucumber (Chinese Long) v3cpicucB001
CSPI01G13120CsGy1G013220Cucumber (Gy14) v2cgybcpiB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G13120Wax gourdcpiwgoB049
CSPI01G13120Cucumber (Gy14) v1cgycpiB327
CSPI01G13120Cucurbita maxima (Rimu)cmacpiB205
CSPI01G13120Cucurbita maxima (Rimu)cmacpiB434
CSPI01G13120Cucurbita moschata (Rifu)cmocpiB192
CSPI01G13120Cucurbita moschata (Rifu)cmocpiB425
CSPI01G13120Melon (DHL92) v3.5.1cpimeB011
CSPI01G13120Watermelon (Charleston Gray)cpiwcgB040
CSPI01G13120Watermelon (97103) v1cpiwmB012
CSPI01G13120Cucurbita pepo (Zucchini)cpecpiB518
CSPI01G13120Cucurbita pepo (Zucchini)cpecpiB530
CSPI01G13120Melon (DHL92) v3.6.1cpimedB011
CSPI01G13120Silver-seed gourdcarcpiB0477
CSPI01G13120Watermelon (97103) v2cpiwmbB034