CsGy1G013220 (gene) Cucumber (Gy14) v2

Overview
NameCsGy1G013220
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr1 : 8576772 .. 8577204 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAAACGATGGAGGGAAAATGAGAAGGGAAATGAATGGGAGAGGAAGAGGAAGAGGAAAAGAGAGAGCCGAGAGGTAATTCAGTGAAGGCCGAAAGTCCAAGTCATTTTTTTGTAGGAAGGTTATTGAGAATGGCGAGAGGCTTTGTTTTTTTGTGGGAAGGGATGAGAATGGGGAGAGCAAGTGGGGGGAAGAGATGAGGATTGAAGAAGGTGTTAAAGGGGATGGGCGAGTGTGTTGAAAGACTAGCCCTCTTTCTTCACGCATGGCAGAAGGCAAATTTGAAAGTGTGGATATATTCATGCATGACATTTATCTGAAGGTGCATGCATGGCAGAAGGCATCTGAAAATCTGAAAAGTTTGGGGAAGGGTGAGTCTCCTCTTTTGATACACATCCTCCATCCAATAATGGCTTCTGCGGCCTTCTGA

mRNA sequence

ATGAAAAAACGATGGAGGGAAAATGAGAAGGGAAATGAATGGGAGAGGAAGAGGAAGAGGAAAAGAGAGAGCCGAGAGGTTATTGAGAATGGCGAGAGGCTTTGTTTTTTTGTGGGAAGGGATGAGAATGGGGAGAGCAAGTGGGGGGAAGAGATGAGGATTGAAGAAGGTGTTAAAGGGGATGGGCGAGTGCATGCATGGCAGAAGGCATCTGAAAATCTGAAAAGTTTGGGGAAGGGTGAGTCTCCTCTTTTGATACACATCCTCCATCCAATAATGGCTTCTGCGGCCTTCTGA

Coding sequence (CDS)

ATGAAAAAACGATGGAGGGAAAATGAGAAGGGAAATGAATGGGAGAGGAAGAGGAAGAGGAAAAGAGAGAGCCGAGAGGTTATTGAGAATGGCGAGAGGCTTTGTTTTTTTGTGGGAAGGGATGAGAATGGGGAGAGCAAGTGGGGGGAAGAGATGAGGATTGAAGAAGGTGTTAAAGGGGATGGGCGAGTGCATGCATGGCAGAAGGCATCTGAAAATCTGAAAAGTTTGGGGAAGGGTGAGTCTCCTCTTTTGATACACATCCTCCATCCAATAATGGCTTCTGCGGCCTTCTGA

Protein sequence

MKKRWRENEKGNEWERKRKRKRESREVIENGERLCFFVGRDENGESKWGEEMRIEEGVKGDGRVHAWQKASENLKSLGKGESPLLIHILHPIMASAAF
Homology
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BLAST of CsGy1G013220 vs. NCBI nr
Match: KGN64783.1 (hypothetical protein Csa_1G097640 [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 1.9e-18
Identity = 52/59 (88.14%), Postives = 54/59 (91.53%), Query Frame = 0 

Query: 40 RDENGESKWGEEMRIEEGVKGDGRVHAWQKASENLKSLGKGESPLLIHILHPIMASAAF 99
          RDENGES+WGEEMRIEEGVKGDGR     KASENLKSLGKGESPLLIH+LHPIMASAAF
Sbjct: 19 RDENGESRWGEEMRIEEGVKGDGR-----KASENLKSLGKGESPLLIHMLHPIMASAAF 72

[Close]
BLAST of CsGy1G013220 vs. TrEMBL
Match: tr|A0A0A0LSL6|A0A0A0LSL6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G097640 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.3e-18
Identity = 52/59 (88.14%), Postives = 54/59 (91.53%), Query Frame = 0 

Query: 40 RDENGESKWGEEMRIEEGVKGDGRVHAWQKASENLKSLGKGESPLLIHILHPIMASAAF 99
          RDENGES+WGEEMRIEEGVKGDGR     KASENLKSLGKGESPLLIH+LHPIMASAAF
Sbjct: 19 RDENGESRWGEEMRIEEGVKGDGR-----KASENLKSLGKGESPLLIHMLHPIMASAAF 72

The following BLAST results are available for this feature:
BLAST of CsGy1G013220 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64783.11.9e-1888.14hypothetical protein Csa_1G097640 [Cucumis sativus][more]
BLAST of CsGy1G013220 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy1G013220 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy1G013220 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LSL6|A0A0A0LSL6_CUCSA1.3e-1888.14Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G097640 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G013220.1CsGy1G013220.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy1G013220Csa1G097640Cucumber (Chinese Long) v2cgybcuB001
CsGy1G013220CSPI01G13120Wild cucumber (PI 183967)cgybcpiB001
CsGy1G013220CsaV3_1G013290Cucumber (Chinese Long) v3cgybcucB002
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy1G013220Cucurbita maxima (Rimu)cgybcmaB061
CsGy1G013220Cucurbita maxima (Rimu)cgybcmaB110
CsGy1G013220Cucurbita moschata (Rifu)cgybcmoB057
CsGy1G013220Cucurbita moschata (Rifu)cgybcmoB104
CsGy1G013220Cucurbita pepo (Zucchini)cgybcpeB090
CsGy1G013220Bottle gourd (USVL1VR-Ls)cgyblsiB045
CsGy1G013220Melon (DHL92) v3.5.1cgybmeB010
CsGy1G013220Melon (DHL92) v3.6.1cgybmedB009
CsGy1G013220Watermelon (Charleston Gray)cgybwcgB035
CsGy1G013220Watermelon (97103) v1cgybwmB012
CsGy1G013220Silver-seed gourdcarcgybB0449
CsGy1G013220Watermelon (97103) v2cgybwmbB034
CsGy1G013220Wax gourdcgybwgoB046