Csa1G097640 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G097640
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 8507030 .. 8507440 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAGGGAAATGAATGGGAGAGGAAGAGGAAGAGGAAAAGAGAGAGCCGAGAGGTAATTCAGTGAAGGCCGAAAGTCTAAGTCATTTTTTTGTAGGAAGGTTATTGAGAATGGCGAGAGGCTTTGTTTTTTTGTGGGAAGGGATGAGAATGGGGAGAGCAGGTGGGGGGAAGAGATGAGGATTGAAGAAGGTGTTAAAGGGGATGGGCGAGTGTGTTGAAAGACTAGCCCTCTTTCTTCACGCATGGCAGAAGGCAAATTTGAAAGTGTGGATATATGCATGCATGACATTTATCTGAAGGTGCATGCATGGCAGAAGGCATCTGAAAATCTGAAAAGTTTGGGGAAGGGTGAGTCTCCTCTTTTGATACACATGCTCCATCCAATAATGGCTTCTGCGGCCTTCTGA

mRNA sequence

ATGAGAAGGGAAATGAATGGGAGAGGAAGAGGAAGAGGAAAAGAGAGAGCCGAGAGGGATGAGAATGGGGAGAGCAGGTGGGGGGAAGAGATGAGGATTGAAGAAGGTGTTAAAGGGGATGGGCGAAAGGCATCTGAAAATCTGAAAAGTTTGGGGAAGGGTGAGTCTCCTCTTTTGATACACATGCTCCATCCAATAATGGCTTCTGCGGCCTTCTGA

Coding sequence (CDS)

ATGAGAAGGGAAATGAATGGGAGAGGAAGAGGAAGAGGAAAAGAGAGAGCCGAGAGGGATGAGAATGGGGAGAGCAGGTGGGGGGAAGAGATGAGGATTGAAGAAGGTGTTAAAGGGGATGGGCGAAAGGCATCTGAAAATCTGAAAAGTTTGGGGAAGGGTGAGTCTCCTCTTTTGATACACATGCTCCATCCAATAATGGCTTCTGCGGCCTTCTGA

Protein sequence

MRREMNGRGRGRGKERAERDENGESRWGEEMRIEEGVKGDGRKASENLKSLGKGESPLLIHMLHPIMASAAF*
Homology
[Close]
BLAST of Csa1G097640 vs. TrEMBL
Match: A0A0A0LSL6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G097640 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 2.8e-33
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1 

Query: 1  MRREMNGRGRGRGKERAERDENGESRWGEEMRIEEGVKGDGRKASENLKSLGKGESPLLI 60
          MRREMNGRGRGRGKERAERDENGESRWGEEMRIEEGVKGDGRKASENLKSLGKGESPLLI
Sbjct: 1  MRREMNGRGRGRGKERAERDENGESRWGEEMRIEEGVKGDGRKASENLKSLGKGESPLLI 60

Query: 61 HMLHPIMASAAF 73
          HMLHPIMASAAF
Sbjct: 61 HMLHPIMASAAF 72

[Close]
BLAST of Csa1G097640 vs. NCBI nr
Match: gi|700209687|gb|KGN64783.1| (hypothetical protein Csa_1G097640 [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 4.0e-33
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1 

Query: 1  MRREMNGRGRGRGKERAERDENGESRWGEEMRIEEGVKGDGRKASENLKSLGKGESPLLI 60
          MRREMNGRGRGRGKERAERDENGESRWGEEMRIEEGVKGDGRKASENLKSLGKGESPLLI
Sbjct: 1  MRREMNGRGRGRGKERAERDENGESRWGEEMRIEEGVKGDGRKASENLKSLGKGESPLLI 60

Query: 61 HMLHPIMASAAF 73
          HMLHPIMASAAF
Sbjct: 61 HMLHPIMASAAF 72

The following BLAST results are available for this feature:
BLAST of Csa1G097640 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSL6_CUCSA2.8e-33100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G097640 PE=4 SV=1[more]
BLAST of Csa1G097640 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209687|gb|KGN64783.1|4.0e-33100.00hypothetical protein Csa_1G097640 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G097640.1Csa1G097640.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G097640CSPI01G13120Wild cucumber (PI 183967)cpicuB000
Csa1G097640CsGy1G013220Cucumber (Gy14) v2cgybcuB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G097640Silver-seed gourdcarcuB0472
Csa1G097640Watermelon (97103) v2cuwmbB034
Csa1G097640Wax gourdcuwgoB049
Csa1G097640Cucumber (Gy14) v1cgycuB314
Csa1G097640Cucurbita maxima (Rimu)cmacuB203
Csa1G097640Cucurbita maxima (Rimu)cmacuB431
Csa1G097640Cucurbita moschata (Rifu)cmocuB188
Csa1G097640Cucurbita moschata (Rifu)cmocuB421
Csa1G097640Melon (DHL92) v3.5.1cumeB015
Csa1G097640Watermelon (Charleston Gray)cuwcgB037
Csa1G097640Watermelon (97103) v1cuwmB010
Csa1G097640Cucurbita pepo (Zucchini)cpecuB516
Csa1G097640Cucurbita pepo (Zucchini)cpecuB528
Csa1G097640Bottle gourd (USVL1VR-Ls)culsiB047
Csa1G097640Melon (DHL92) v3.6.1cumedB010