CsaV3_1G013290 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G013290
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 8578102 .. 8578512 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAGGGAAATGAATGGGAGAGGAAGAGGAAGAGGAAAAGAGAGAGCCGAGAGGTAATTCAGTGAAGGCCGAAAGTCTAAGTCATTTTTTTGTAGGAAGGTTATTGAGAATGGCGAGAGGCTTTGTTTTTTTGTGGGAAGGGATGAGAATGGGGAGAGCAGGTGGGGGGAAGAGATGAGGATTGAAGAAGGTGTTAAAGGGGATGGGCGAGTGTGTTGAAAGACTAGCCCTCTTTCTTCACGCATGGCAGAAGGCAAATTTGAAAGTGTGGATATATGCATGCATGACATTTATCTGAAGGTGCATGCATGGCAGAAGGCATCTGAAAATCTGAAAAGTTTGGGGAAGGGTGAGTCTCCTCTTTTGATACACATGCTCCATCCAATAATGGCTTCTGCGGCCTTCTGA

mRNA sequence

ATGAGAAGGGAAATGAATGGGAGAGGAAGAGGAAGAGGAAAAGAGAGAGCCGAGAGGGATGAGAATGGGGAGAGCAGGTGGGGGGAAGAGATGAGGATTGAAGAAGGTGTTAAAGGGGATGGGCGAAAGGCATCTGAAAATCTGAAAAGTTTGGGGAAGGGTGAGTCTCCTCTTTTGATACACATGCTCCATCCAATAATGGCTTCTGCGGCCTTCTGA

Coding sequence (CDS)

ATGAGAAGGGAAATGAATGGGAGAGGAAGAGGAAGAGGAAAAGAGAGAGCCGAGAGGGATGAGAATGGGGAGAGCAGGTGGGGGGAAGAGATGAGGATTGAAGAAGGTGTTAAAGGGGATGGGCGAAAGGCATCTGAAAATCTGAAAAGTTTGGGGAAGGGTGAGTCTCCTCTTTTGATACACATGCTCCATCCAATAATGGCTTCTGCGGCCTTCTGA

Protein sequence

MRREMNGRGRGRGKERAERDENGESRWGEEMRIEEGVKGDGRKASENLKSLGKGESPLLIHMLHPIMASAAF
Homology
[Close]
BLAST of CsaV3_1G013290 vs. NCBI nr
Match: KGN64783.1 (hypothetical protein Csa_1G097640 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 5.5e-26
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0 

Query: 1  MRREMNGRXXXXXXXRAERDENGESRWGEEMRIEEGVKGDGRKASENLKSLGKGESPLLI 60
          MRREMNGRXXXXXXXRAERDENGESRWGEEMRIEEGVKGDGRKASENLKSLGKGESPLLI
Sbjct: 1  MRREMNGRXXXXXXXRAERDENGESRWGEEMRIEEGVKGDGRKASENLKSLGKGESPLLI 60

Query: 61 HMLHPIMASAAF 73
          HMLHPIMASAAF
Sbjct: 61 HMLHPIMASAAF 72

[Close]
BLAST of CsaV3_1G013290 vs. TrEMBL
Match: tr|A0A0A0LSL6|A0A0A0LSL6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G097640 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.6e-26
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0 

Query: 1  MRREMNGRXXXXXXXRAERDENGESRWGEEMRIEEGVKGDGRKASENLKSLGKGESPLLI 60
          MRREMNGRXXXXXXXRAERDENGESRWGEEMRIEEGVKGDGRKASENLKSLGKGESPLLI
Sbjct: 1  MRREMNGRXXXXXXXRAERDENGESRWGEEMRIEEGVKGDGRKASENLKSLGKGESPLLI 60

Query: 61 HMLHPIMASAAF 73
          HMLHPIMASAAF
Sbjct: 61 HMLHPIMASAAF 72

The following BLAST results are available for this feature:
BLAST of CsaV3_1G013290 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64783.15.5e-26100.00hypothetical protein Csa_1G097640 [Cucumis sativus][more]
BLAST of CsaV3_1G013290 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G013290 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G013290 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LSL6|A0A0A0LSL6_CUCSA3.6e-26100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G097640 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G013290.1CsaV3_1G013290.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..49

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G013290CSPI01G13120Wild cucumber (PI 183967)cpicucB001
CsaV3_1G013290CsGy1G013220Cucumber (Gy14) v2cgybcucB002
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G013290Silver-seed gourdcarcucB0474
CsaV3_1G013290Cucumber (Gy14) v1cgycucB332
CsaV3_1G013290Cucurbita maxima (Rimu)cmacucB0234
CsaV3_1G013290Cucurbita maxima (Rimu)cmacucB0518
CsaV3_1G013290Cucurbita moschata (Rifu)cmocucB0221
CsaV3_1G013290Cucurbita moschata (Rifu)cmocucB0505
CsaV3_1G013290Cucurbita pepo (Zucchini)cpecucB0635
CsaV3_1G013290Cucurbita pepo (Zucchini)cpecucB0657
CsaV3_1G013290Bottle gourd (USVL1VR-Ls)cuclsiB053
CsaV3_1G013290Melon (DHL92) v3.5.1cucmeB010
CsaV3_1G013290Melon (DHL92) v3.6.1cucmedB009
CsaV3_1G013290Watermelon (Charleston Gray)cucwcgB040
CsaV3_1G013290Watermelon (97103) v1cucwmB015
CsaV3_1G013290Watermelon (97103) v2cucwmbB032
CsaV3_1G013290Wax gourdcucwgoB051