CSPI01G13120.1 (mRNA) Wild cucumber (PI 183967)

NameCSPI01G13120.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 8577718 .. 8578128 (+)
Sequence length219
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAGGGAAATGAATGGGAGAGGAAGAGGAAGAGGAAAAGAGAGAGCCGAGAGGTAATTCAGTGAAGGCCGAAAGTCTAAGTCATTTTTTTGTAGGAAGGTTATTGAGAATGGCGAGAGGCATTGTTTTTTTGTGGGAAGGGATGAGAATGGGGAGAGCAAGTGGGGGGAAGAGATGAGGATTGAAGAAGGTGTTAAAGGGGATGGGCGAGTGTGTTGAAAGACTCGCCCTCTTTCTTCACGCATGGCAGAAGGCAAATTTGAAAGTGTGGATATATGCATGCATGACATTTATCTGAAGGTGCATGCATGGCAGAAGGCATCTGAAAATCTGAAAAGTTTGGGGAAGGGTGAGTCTCCTCTTTTGATACACATCCTCCATCCAATAATGGCTTCTGCGGCCTTCTGA

mRNA sequence

ATGAGAAGGGAAATGAATGGGAGAGGAAGAGGAAGAGGAAAAGAGAGAGCCGAGAGGGATGAGAATGGGGAGAGCAAGTGGGGGGAAGAGATGAGGATTGAAGAAGGTGTTAAAGGGGATGGGCGAAAGGCATCTGAAAATCTGAAAAGTTTGGGGAAGGGTGAGTCTCCTCTTTTGATACACATCCTCCATCCAATAATGGCTTCTGCGGCCTTCTGA

Coding sequence (CDS)

ATGAGAAGGGAAATGAATGGGAGAGGAAGAGGAAGAGGAAAAGAGAGAGCCGAGAGGGATGAGAATGGGGAGAGCAAGTGGGGGGAAGAGATGAGGATTGAAGAAGGTGTTAAAGGGGATGGGCGAAAGGCATCTGAAAATCTGAAAAGTTTGGGGAAGGGTGAGTCTCCTCTTTTGATACACATCCTCCATCCAATAATGGCTTCTGCGGCCTTCTGA
BLAST of CSPI01G13120.1 vs. TrEMBL
Match: A0A0A0LSL6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G097640 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 2.5e-29
Identity = 70/72 (97.22%), Postives = 72/72 (100.00%), Query Frame = 1

Query: 1  MRREMNGRGRGRGKERAERDENGESKWGEEMRIEEGVKGDGRKASENLKSLGKGESPLLI 60
          MRREMNGRGRGRGKERAERDENGES+WGEEMRIEEGVKGDGRKASENLKSLGKGESPLLI
Sbjct: 1  MRREMNGRGRGRGKERAERDENGESRWGEEMRIEEGVKGDGRKASENLKSLGKGESPLLI 60

Query: 61 HILHPIMASAAF 73
          H+LHPIMASAAF
Sbjct: 61 HMLHPIMASAAF 72

BLAST of CSPI01G13120.1 vs. NCBI nr
Match: gi|700209687|gb|KGN64783.1| (hypothetical protein Csa_1G097640 [Cucumis sativus])

HSP 1 Score: 135.6 bits (340), Expect = 3.5e-29
Identity = 70/72 (97.22%), Postives = 72/72 (100.00%), Query Frame = 1

Query: 1  MRREMNGRGRGRGKERAERDENGESKWGEEMRIEEGVKGDGRKASENLKSLGKGESPLLI 60
          MRREMNGRGRGRGKERAERDENGES+WGEEMRIEEGVKGDGRKASENLKSLGKGESPLLI
Sbjct: 1  MRREMNGRGRGRGKERAERDENGESRWGEEMRIEEGVKGDGRKASENLKSLGKGESPLLI 60

Query: 61 HILHPIMASAAF 73
          H+LHPIMASAAF
Sbjct: 61 HMLHPIMASAAF 72

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LSL6_CUCSA2.5e-2997.22Uncharacterized protein OS=Cucumis sativus GN=Csa_1G097640 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|700209687|gb|KGN64783.1|3.5e-2997.22hypothetical protein Csa_1G097640 [Cucumis sativus][more]
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI01G13120CSPI01G13120gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI01G13120.1CSPI01G13120.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI01G13120.1.cds1CSPI01G13120.1.cds1CDS
CSPI01G13120.1.cds2CSPI01G13120.1.cds2CDS
CSPI01G13120.1.cds3CSPI01G13120.1.cds3CDS