CSPI01G10390 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G10390
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
Descriptionp55
LocationChr1 : 6550938 .. 6551793 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAAAATATACTTATTTTGGTGAGTGTGCAATAAAAAATCTGGAAAATGACTACGTTTGATAGTTGACTAGAAGGGATGTTGACCATTATTGTAGATCTAGATCAGTACACATTGTAAGGTGGTGGTGGTATTGTTTTAACTTTCTATCTATATATGTGAGCTTTGAAAAGTTGATTATTAGGCCTACAAACACAACACAACACCATGGGGGGTGAGTTAAACCTTGCTCATGGGATCTTTAATCCCCCCTCATCACCCAGTAAAAAAAACACACCCAAATTCCCTGGAAGGTCCTCCGTTGAGCCACAGACACCGGATCCAGTTCATGGTAAGAAGAGGCCGGCGCCTGTTAGCCCCAACGACGACTTCCAACATGATCGTCCCCCAACTCAAAAGCGAAAAACCGATAACGCAGAGGAGGGTTCAAGCTCGGACGTGCCAATGAAAGATCTGATAGAGAAAGTTGAAGACATGGTTAAGATGCTGAAAAGGGTGGGCCGGAAAAAGGATAAATTGGTGAGTGATCCTTTGTTGGCTTGCTTTGTGTCTGCCCAGGCTCTGCTTACGGCTTGCACTGCTGAGCTTATTTCTAGATCTACTAGAAAAGCAAAGCCGCTAGTTCACCAGCACAGTGATCTCTCTATTAATTATGGTTCTACTACTACTGCTGCTGGTGGAAGTGGAGAGACGAAGAAAATTAAAAAAGTATAAACAGTCCGCCAAGTAGTCAACCTTAATCCTCCAACAAGAAACTCTCCAATTCTCTAATTATCAGAATATTATTGTTACTATTTTACTTTTCTTTCTTCTTTTTTGTAATAATGTTATGTTTTATTAGATCCACATCTCGTGCTG

mRNA sequence

ATGGGGGGTGAGTTAAACCTTGCTCATGGGATCTTTAATCCCCCCTCATCACCCAGTAAAAAAAACACACCCAAATTCCCTGGAAGGTCCTCCGTTGAGCCACAGACACCGGATCCAGTTCATGGTAAGAAGAGGCCGGCGCCTGTTAGCCCCAACGACGACTTCCAACATGATCGTCCCCCAACTCAAAAGCGAAAAACCGATAACGCAGAGGAGGGTTCAAGCTCGGACGTGCCAATGAAAGATCTGATAGAGAAAGTTGAAGACATGGTTAAGATGCTGAAAAGGGTGGGCCGGAAAAAGGATAAATTGGTGAGTGATCCTTTGTTGGCTTGCTTTGTGTCTGCCCAGGCTCTGCTTACGGCTTGCACTGCTGAGCTTATTTCTAGATCTACTAGAAAAGCAAAGCCGCTAGTTCACCAGCACAGTGATCTCTCTATTAATTATGGTTCTACTACTACTGCTGCTGGTGGAAGTGGAGAGACGAAGAAAATTAAAAAAGTATAA

Coding sequence (CDS)

ATGGGGGGTGAGTTAAACCTTGCTCATGGGATCTTTAATCCCCCCTCATCACCCAGTAAAAAAAACACACCCAAATTCCCTGGAAGGTCCTCCGTTGAGCCACAGACACCGGATCCAGTTCATGGTAAGAAGAGGCCGGCGCCTGTTAGCCCCAACGACGACTTCCAACATGATCGTCCCCCAACTCAAAAGCGAAAAACCGATAACGCAGAGGAGGGTTCAAGCTCGGACGTGCCAATGAAAGATCTGATAGAGAAAGTTGAAGACATGGTTAAGATGCTGAAAAGGGTGGGCCGGAAAAAGGATAAATTGGTGAGTGATCCTTTGTTGGCTTGCTTTGTGTCTGCCCAGGCTCTGCTTACGGCTTGCACTGCTGAGCTTATTTCTAGATCTACTAGAAAAGCAAAGCCGCTAGTTCACCAGCACAGTGATCTCTCTATTAATTATGGTTCTACTACTACTGCTGCTGGTGGAAGTGGAGAGACGAAGAAAATTAAAAAAGTATAA
Homology
[Close]
BLAST of CSPI01G10390 vs. TrEMBL
Match: A0A0A0LX14_CUCSA (p55 OS=Cucumis sativus GN=Csa_1G059750 PE=4 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 1.0e-86
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 1 

Query: 1   MGGELNLAHGIFNPPSSPSKKNTPKFPGRSSVEPQTPDPVHGKKRPAPVSPNDDFQHDRP 60
           MGGELNLAHGIFNPPSSPSKKNTPKFPGRSSVEPQTPDPVHGKKRPAPVSPNDDFQHDRP
Sbjct: 1   MGGELNLAHGIFNPPSSPSKKNTPKFPGRSSVEPQTPDPVHGKKRPAPVSPNDDFQHDRP 60

Query: 61  PTQKRKTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALL 120
           PTQKRKTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALL
Sbjct: 61  PTQKRKTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALL 120

Query: 121 TACTAELISRSTRKAKPLVHQHSDLSINYGSTTTAAGGSGETKKIKKV 169
           TACTAELISRSTRKAKPLVHQHSDLSINYGSTTTAAGGSGETKKIKKV
Sbjct: 121 TACTAELISRSTRKAKPLVHQHSDLSINYGSTTTAAGGSGETKKIKKV 168

[Close]
BLAST of CSPI01G10390 vs. TrEMBL
Match: A0A0A0LRJ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G060770 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.6e-09
Identity = 49/98 (50.00%), Postives = 59/98 (60.20%), Query Frame = 1 

Query: 72  EGSSSD-VPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALLTACTAELISR 131
           EGSSS      DLI K+E+ V+ +K V  +KD LVS PLLACFV+AQ LL  CT +L   
Sbjct: 44  EGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYT 103

Query: 132 STRKAKPLVHQHSDLSINYGSTTT-AAGGSGETKKIKK 168
           ST       HQ S++S+   STT  AA  S E  KIKK
Sbjct: 104 STGD-----HQRSEVSVKDSSTTNEAADRSVEENKIKK 136

[Close]
BLAST of CSPI01G10390 vs. NCBI nr
Match: gi|700209400|gb|KGN64496.1| (p55 [Cucumis sativus])

HSP 1 Score: 327.4 bits (838), Expect = 1.5e-86
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 1 

Query: 1   MGGELNLAHGIFNPPSSPSKKNTPKFPGRSSVEPQTPDPVHGKKRPAPVSPNDDFQHDRP 60
           MGGELNLAHGIFNPPSSPSKKNTPKFPGRSSVEPQTPDPVHGKKRPAPVSPNDDFQHDRP
Sbjct: 1   MGGELNLAHGIFNPPSSPSKKNTPKFPGRSSVEPQTPDPVHGKKRPAPVSPNDDFQHDRP 60

Query: 61  PTQKRKTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALL 120
           PTQKRKTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALL
Sbjct: 61  PTQKRKTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALL 120

Query: 121 TACTAELISRSTRKAKPLVHQHSDLSINYGSTTTAAGGSGETKKIKKV 169
           TACTAELISRSTRKAKPLVHQHSDLSINYGSTTTAAGGSGETKKIKKV
Sbjct: 121 TACTAELISRSTRKAKPLVHQHSDLSINYGSTTTAAGGSGETKKIKKV 168

[Close]
BLAST of CSPI01G10390 vs. NCBI nr
Match: gi|659067697|ref|XP_008440827.1| (PREDICTED: uncharacterized protein LOC103485133 isoform X1 [Cucumis melo])

HSP 1 Score: 99.0 bits (245), Expect = 8.5e-18
Identity = 73/161 (45.34%), Postives = 93/161 (57.76%), Query Frame = 1 

Query: 7   LAHGIFNPPSSPSKKNTPKFPGRS-SVEPQTPDPVHGKKRPAPVSPNDDFQHDRPPTQKR 66
           L+    N PSSPSK +       +  V P TP+   GKK     S ++  +  R    K 
Sbjct: 197 LSASTVNEPSSPSKLSASNNSDPNIEVGPDTPENSRGKKTSGSNSRDNRSEEKRETKIKA 256

Query: 67  KTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALLTACTA 126
           +TD    GSS  VP+ DLI ++++MV MLK  GR    LV+ PLL CFVSAQ LL AC  
Sbjct: 257 QTDQ-NSGSSLTVPLDDLIARMKEMVNMLKSEGR----LVNSPLLGCFVSAQTLLMACAT 316

Query: 127 ELISRSTRKAKPLVHQHSDLSINYGSTT---TAAGGSGETK 164
           EL+S S  K+K L HQ S++S+NY STT   TAA G+GE K
Sbjct: 317 ELLSISIGKSKALHHQGSEISVNYSSTTTNDTAADGNGEKK 352

[Close]
BLAST of CSPI01G10390 vs. NCBI nr
Match: gi|700209404|gb|KGN64500.1| (hypothetical protein Csa_1G060770 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 9.4e-09
Identity = 49/98 (50.00%), Postives = 59/98 (60.20%), Query Frame = 1 

Query: 72  EGSSSD-VPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALLTACTAELISR 131
           EGSSS      DLI K+E+ V+ +K V  +KD LVS PLLACFV+AQ LL  CT +L   
Sbjct: 44  EGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYT 103

Query: 132 STRKAKPLVHQHSDLSINYGSTTT-AAGGSGETKKIKK 168
           ST       HQ S++S+   STT  AA  S E  KIKK
Sbjct: 104 STGD-----HQRSEVSVKDSSTTNEAADRSVEENKIKK 136

The following BLAST results are available for this feature:
BLAST of CSPI01G10390 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G10390 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LX14_CUCSA1.0e-86100.00p55 OS=Cucumis sativus GN=Csa_1G059750 PE=4 SV=1[more]
A0A0A0LRJ2_CUCSA6.6e-0950.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G060770 PE=4 SV=1[more]
BLAST of CSPI01G10390 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G10390 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209400|gb|KGN64496.1|1.5e-86100.00p55 [Cucumis sativus][more]
gi|659067697|ref|XP_008440827.1|8.5e-1845.34PREDICTED: uncharacterized protein LOC103485133 isoform X1 [Cucumis melo][more]
gi|700209404|gb|KGN64500.1|9.4e-0950.00hypothetical protein Csa_1G060770 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G10390.1CSPI01G10390.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G10390Cla019361Watermelon (97103) v1cpiwmB010
CSPI01G10390Csa1G059750Cucumber (Chinese Long) v2cpicuB000
CSPI01G10390MELO3C002437Melon (DHL92) v3.5.1cpimeB036
CSPI01G10390ClCG03G004530Watermelon (Charleston Gray)cpiwcgB038
CSPI01G10390Lsi02G005760Bottle gourd (USVL1VR-Ls)cpilsiB021
CSPI01G10390CsaV3_1G010500Cucumber (Chinese Long) v3cpicucB001
CSPI01G10390Cla97C03G055680Watermelon (97103) v2cpiwmbB032
CSPI01G10390Bhi08G001487Wax gourdcpiwgoB033
CSPI01G10390Cucsa.085600Cucumber (Gy14) v1cgycpiB090
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G10390Cucurbita moschata (Rifu)cmocpiB205
CSPI01G10390Cucurbita moschata (Rifu)cmocpiB383
CSPI01G10390Cucurbita moschata (Rifu)cmocpiB648
CSPI01G10390Cucurbita moschata (Rifu)cmocpiB845
CSPI01G10390Cucumber (Chinese Long) v2cpicuB013
CSPI01G10390Cucumber (Chinese Long) v2cpicuB044
CSPI01G10390Melon (DHL92) v3.5.1cpimeB024
CSPI01G10390Melon (DHL92) v3.5.1cpimeB086
CSPI01G10390Watermelon (Charleston Gray)cpiwcgB016
CSPI01G10390Watermelon (97103) v1cpiwmB043
CSPI01G10390Cucurbita pepo (Zucchini)cpecpiB050
CSPI01G10390Cucurbita pepo (Zucchini)cpecpiB474
CSPI01G10390Cucurbita pepo (Zucchini)cpecpiB506
CSPI01G10390Bottle gourd (USVL1VR-Ls)cpilsiB018
CSPI01G10390Bottle gourd (USVL1VR-Ls)cpilsiB030
CSPI01G10390Melon (DHL92) v3.6.1cpimedB020
CSPI01G10390Melon (DHL92) v3.6.1cpimedB023
CSPI01G10390Melon (DHL92) v3.6.1cpimedB076
CSPI01G10390Cucumber (Gy14) v2cgybcpiB001
CSPI01G10390Cucumber (Gy14) v2cgybcpiB247
CSPI01G10390Silver-seed gourdcarcpiB0531
CSPI01G10390Silver-seed gourdcarcpiB0670
CSPI01G10390Silver-seed gourdcarcpiB0968
CSPI01G10390Silver-seed gourdcarcpiB1044
CSPI01G10390Cucumber (Chinese Long) v3cpicucB009
CSPI01G10390Cucumber (Chinese Long) v3cpicucB010
CSPI01G10390Cucumber (Chinese Long) v3cpicucB017
CSPI01G10390Cucumber (Chinese Long) v3cpicucB051
CSPI01G10390Watermelon (97103) v2cpiwmbB001
CSPI01G10390Watermelon (97103) v2cpiwmbB041
CSPI01G10390Wax gourdcpiwgoB047
CSPI01G10390Wild cucumber (PI 183967)cpicpiB038
CSPI01G10390Cucurbita pepo (Zucchini)cpecpiB025
CSPI01G10390Cucumber (Gy14) v1cgycpiB016
CSPI01G10390Cucurbita maxima (Rimu)cmacpiB219
CSPI01G10390Cucurbita maxima (Rimu)cmacpiB401
CSPI01G10390Cucurbita maxima (Rimu)cmacpiB656
CSPI01G10390Cucurbita maxima (Rimu)cmacpiB865