Csa1G059750 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G059750
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 6507249 .. 6507982 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAGTTGATTATTAGGCCTACAAACACAACACAACACCATGGGGGGTGAGTTAAACCTTGCTCATGGGATCTTTAATCCCCCCTCATCACCCAGTAAAAAAAACACACCCAAATTCCCTGGAAGGTCGTCCGTTGAGCCACAGACACCGGATCCAGTTCATGGTAAGAAGAGGCCGGCGCCTGTTAGCCCCAACGACGACTTCCAACATGATCGTCCCCCAACTCAAAAGCGAAAAACCGATAACGCAGAGGAGGGTTCAAGCTCGGACGTGCCAATGAAAGATCTGATAGAGAAAGTTGAAGACATGGTTAAGATGCTGAAAAGGGTGGGCCGGAAAAAGGATAAATTGGTGAGTGATCCTTTGTTGGCTTGCTTTGTGTCTGCCCAGGCTCTGCTTACGGCTTGCACTGCTGAGCTTATTTCTAGATCTACTAGAAAAGCAAAGCCGCTAGTTCACCAGCACAGTGATCTCTCTATTAATTATGGTTCTACTACTACTGCTGCTGGTGGAAGTGGAGAGACGAAGAAAATTAAAAAAGTATAAACAGTCCGCCAAGTAGTCAACCTTAATCCTCCAACAAGAAACTCTCCAATTCTCTAATTATCAGAATATTATTGTTACTATTTTACTTTTCTTTCTTCTTTTTTGTAATAATGTTATGTTTTATTAGATCCACATCTCGTGCTGTCTTAACACTTTTCCTTTTGTTCAAATAAAATTATTATTATTAT

mRNA sequence

ATGGGGGGTGAGTTAAACCTTGCTCATGGGATCTTTAATCCCCCCTCATCACCCAGTAAAAAAAACACACCCAAATTCCCTGGAAGGTCGTCCGTTGAGCCACAGACACCGGATCCAGTTCATGGTAAGAAGAGGCCGGCGCCTGTTAGCCCCAACGACGACTTCCAACATGATCGTCCCCCAACTCAAAAGCGAAAAACCGATAACGCAGAGGAGGGTTCAAGCTCGGACGTGCCAATGAAAGATCTGATAGAGAAAGTTGAAGACATGGTTAAGATGCTGAAAAGGGTGGGCCGGAAAAAGGATAAATTGGTGAGTGATCCTTTGTTGGCTTGCTTTGTGTCTGCCCAGGCTCTGCTTACGGCTTGCACTGCTGAGCTTATTTCTAGATCTACTAGAAAAGCAAAGCCGCTAGTTCACCAGCACAGTGATCTCTCTATTAATTATGGTTCTACTACTACTGCTGCTGGTGGAAGTGGAGAGACGAAGAAAATTAAAAAAGTATAA

Coding sequence (CDS)

ATGGGGGGTGAGTTAAACCTTGCTCATGGGATCTTTAATCCCCCCTCATCACCCAGTAAAAAAAACACACCCAAATTCCCTGGAAGGTCGTCCGTTGAGCCACAGACACCGGATCCAGTTCATGGTAAGAAGAGGCCGGCGCCTGTTAGCCCCAACGACGACTTCCAACATGATCGTCCCCCAACTCAAAAGCGAAAAACCGATAACGCAGAGGAGGGTTCAAGCTCGGACGTGCCAATGAAAGATCTGATAGAGAAAGTTGAAGACATGGTTAAGATGCTGAAAAGGGTGGGCCGGAAAAAGGATAAATTGGTGAGTGATCCTTTGTTGGCTTGCTTTGTGTCTGCCCAGGCTCTGCTTACGGCTTGCACTGCTGAGCTTATTTCTAGATCTACTAGAAAAGCAAAGCCGCTAGTTCACCAGCACAGTGATCTCTCTATTAATTATGGTTCTACTACTACTGCTGCTGGTGGAAGTGGAGAGACGAAGAAAATTAAAAAAGTATAA

Protein sequence

MGGELNLAHGIFNPPSSPSKKNTPKFPGRSSVEPQTPDPVHGKKRPAPVSPNDDFQHDRPPTQKRKTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALLTACTAELISRSTRKAKPLVHQHSDLSINYGSTTTAAGGSGETKKIKKV*
Homology
[Close]
BLAST of Csa1G059750 vs. TrEMBL
Match: A0A0A0LX14_CUCSA (p55 OS=Cucumis sativus GN=Csa_1G059750 PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 9.0e-91
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 1 

Query: 1   MGGELNLAHGIFNPPSSPSKKNTPKFPGRSSVEPQTPDPVHGKKRPAPVSPNDDFQHDRP 60
           MGGELNLAHGIFNPPSSPSKKNTPKFPGRSSVEPQTPDPVHGKKRPAPVSPNDDFQHDRP
Sbjct: 1   MGGELNLAHGIFNPPSSPSKKNTPKFPGRSSVEPQTPDPVHGKKRPAPVSPNDDFQHDRP 60

Query: 61  PTQKRKTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALL 120
           PTQKRKTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALL
Sbjct: 61  PTQKRKTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALL 120

Query: 121 TACTAELISRSTRKAKPLVHQHSDLSINYGSTTTAAGGSGETKKIKKV 169
           TACTAELISRSTRKAKPLVHQHSDLSINYGSTTTAAGGSGETKKIKKV
Sbjct: 121 TACTAELISRSTRKAKPLVHQHSDLSINYGSTTTAAGGSGETKKIKKV 168

[Close]
BLAST of Csa1G059750 vs. TrEMBL
Match: A0A0A0LRJ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G060770 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.0e-10
Identity = 49/98 (50.00%), Postives = 59/98 (60.20%), Query Frame = 1 

Query: 72  EGSSSD-VPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALLTACTAELISR 131
           EGSSS      DLI K+E+ V+ +K V  +KD LVS PLLACFV+AQ LL  CT +L   
Sbjct: 44  EGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYT 103

Query: 132 STRKAKPLVHQHSDLSINYGSTTT-AAGGSGETKKIKK 168
           ST       HQ S++S+   STT  AA  S E  KIKK
Sbjct: 104 STGD-----HQRSEVSVKDSSTTNEAADRSVEENKIKK 136

[Close]
BLAST of Csa1G059750 vs. TrEMBL
Match: A0A0A0LU71_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G060760 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 6.1e-07
Identity = 34/68 (50.00%), Postives = 42/68 (61.76%), Query Frame = 1 

Query: 61  PTQKRKTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALL 120
           PT+ +K      GSS   P+ DL  KV +MV MLK  G     +++ PLLACFVSAQ LL
Sbjct: 81  PTENKKALPPSSGSSLTAPLDDLKVKVNEMVNMLKSEGHL---VINGPLLACFVSAQTLL 140

Query: 121 TACTAELI 129
            ACT EL+
Sbjct: 141 MACTTELL 145

[Close]
BLAST of Csa1G059750 vs. TrEMBL
Match: A0A0A0LU71_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G060760 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 9.8e-05
Identity = 33/87 (37.93%), Postives = 47/87 (54.02%), Query Frame = 1 

Query: 52  NDDFQHDRPPTQKRKT-DNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLL 111
           N +F +D     K  +  +++   SS +  KDLI K E+ +K +K    KKD L +  LL
Sbjct: 4   NKNFSNDELICSKSNSVKSSQVKGSSSLATKDLILKTEETIKKVKSECWKKDNLATGSLL 63

Query: 112 ACFVSAQALLTACTAELISRSTRKAKP 138
            CF SAQ LL ACTA L + + +   P
Sbjct: 64  GCFESAQTLLVACTAVLPTENKKALPP 90

[Close]
BLAST of Csa1G059750 vs. NCBI nr
Match: gi|700209400|gb|KGN64496.1| (p55 [Cucumis sativus])

HSP 1 Score: 340.9 bits (873), Expect = 1.3e-90
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 1 

Query: 1   MGGELNLAHGIFNPPSSPSKKNTPKFPGRSSVEPQTPDPVHGKKRPAPVSPNDDFQHDRP 60
           MGGELNLAHGIFNPPSSPSKKNTPKFPGRSSVEPQTPDPVHGKKRPAPVSPNDDFQHDRP
Sbjct: 1   MGGELNLAHGIFNPPSSPSKKNTPKFPGRSSVEPQTPDPVHGKKRPAPVSPNDDFQHDRP 60

Query: 61  PTQKRKTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALL 120
           PTQKRKTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALL
Sbjct: 61  PTQKRKTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALL 120

Query: 121 TACTAELISRSTRKAKPLVHQHSDLSINYGSTTTAAGGSGETKKIKKV 169
           TACTAELISRSTRKAKPLVHQHSDLSINYGSTTTAAGGSGETKKIKKV
Sbjct: 121 TACTAELISRSTRKAKPLVHQHSDLSINYGSTTTAAGGSGETKKIKKV 168

[Close]
BLAST of Csa1G059750 vs. NCBI nr
Match: gi|659067697|ref|XP_008440827.1| (PREDICTED: uncharacterized protein LOC103485133 isoform X1 [Cucumis melo])

HSP 1 Score: 112.8 bits (281), Expect = 5.7e-22
Identity = 73/161 (45.34%), Postives = 93/161 (57.76%), Query Frame = 1 

Query: 7   LAHGIFNPPSSPSKKNTPKFPGRS-SVEPQTPDPVHGKKRPAPVSPNDDFQHDRPPTQKR 66
           L+    N PSSPSK +       +  V P TP+   GKK     S ++  +  R    K 
Sbjct: 197 LSASTVNEPSSPSKLSASNNSDPNIEVGPDTPENSRGKKTSGSNSRDNRSEEKRETKIKA 256

Query: 67  KTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALLTACTA 126
           +TD    GSS  VP+ DLI ++++MV MLK  GR    LV+ PLL CFVSAQ LL AC  
Sbjct: 257 QTDQ-NSGSSLTVPLDDLIARMKEMVNMLKSEGR----LVNSPLLGCFVSAQTLLMACAT 316

Query: 127 ELISRSTRKAKPLVHQHSDLSINYGSTT---TAAGGSGETK 164
           EL+S S  K+K L HQ S++S+NY STT   TAA G+GE K
Sbjct: 317 ELLSISIGKSKALHHQGSEISVNYSSTTTNDTAADGNGEKK 352

[Close]
BLAST of Csa1G059750 vs. NCBI nr
Match: gi|659067697|ref|XP_008440827.1| (PREDICTED: uncharacterized protein LOC103485133 isoform X1 [Cucumis melo])

HSP 1 Score: 56.2 bits (134), Expect = 6.3e-05
Identity = 51/144 (35.42%), Postives = 70/144 (48.61%), Query Frame = 1 

Query: 16  SSPSKKNTPKFPGRSSVEPQTPDPVHGKKRPAPVSPNDDFQHDRPPTQKRKTDNAEEGSS 75
           SSPS  N+      S   P      HG++R    S +D  +H+     + K    +EG S
Sbjct: 92  SSPSNNNSNSI---SKPGPTEDTQSHGRRRTRSPSLDDTSEHEH----RDKRLKLKEGWS 151

Query: 76  SDVP-MKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALLTACTAELISRST-- 135
           S V  + DLIE+VE++VK LK V   K   V+ PLLA F+SA   L   T +L+S ST  
Sbjct: 152 SGVDRLDDLIERVEELVKKLKGVDG-KKDSVNGPLLASFMSAFTQLENWTEQLLSASTVN 211

Query: 136 ---RKAKPLVHQHSDLSINYGSTT 154
                +K     +SD +I  G  T
Sbjct: 212 EPSSPSKLSASNNSDPNIEVGPDT 227


HSP 2 Score: 73.9 bits (180), Expect = 2.9e-10
Identity = 49/98 (50.00%), Postives = 59/98 (60.20%), Query Frame = 1 

Query: 72  EGSSSD-VPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALLTACTAELISR 131
           EGSSS      DLI K+E+ V+ +K V  +KD LVS PLLACFV+AQ LL  CT +L   
Sbjct: 44  EGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYT 103

Query: 132 STRKAKPLVHQHSDLSINYGSTTT-AAGGSGETKKIKK 168
           ST       HQ S++S+   STT  AA  S E  KIKK
Sbjct: 104 STGD-----HQRSEVSVKDSSTTNEAADRSVEENKIKK 136

[Close]
BLAST of Csa1G059750 vs. NCBI nr
Match: gi|700209403|gb|KGN64499.1| (hypothetical protein Csa_1G060760 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 8.8e-07
Identity = 34/68 (50.00%), Postives = 42/68 (61.76%), Query Frame = 1 

Query: 61  PTQKRKTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALL 120
           PT+ +K      GSS   P+ DL  KV +MV MLK  G     +++ PLLACFVSAQ LL
Sbjct: 81  PTENKKALPPSSGSSLTAPLDDLKVKVNEMVNMLKSEGHL---VINGPLLACFVSAQTLL 140

Query: 121 TACTAELI 129
            ACT EL+
Sbjct: 141 MACTTELL 145

[Close]
BLAST of Csa1G059750 vs. NCBI nr
Match: gi|700209403|gb|KGN64499.1| (hypothetical protein Csa_1G060760 [Cucumis sativus])

HSP 1 Score: 55.1 bits (131), Expect = 1.4e-04
Identity = 33/87 (37.93%), Postives = 47/87 (54.02%), Query Frame = 1 

Query: 52  NDDFQHDRPPTQKRKT-DNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLL 111
           N +F +D     K  +  +++   SS +  KDLI K E+ +K +K    KKD L +  LL
Sbjct: 4   NKNFSNDELICSKSNSVKSSQVKGSSSLATKDLILKTEETIKKVKSECWKKDNLATGSLL 63

Query: 112 ACFVSAQALLTACTAELISRSTRKAKP 138
            CF SAQ LL ACTA L + + +   P
Sbjct: 64  GCFESAQTLLVACTAVLPTENKKALPP 90

The following BLAST results are available for this feature:
BLAST of Csa1G059750 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LX14_CUCSA9.0e-91100.00p55 OS=Cucumis sativus GN=Csa_1G059750 PE=4 SV=1[more]
A0A0A0LRJ2_CUCSA2.0e-1050.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G060770 PE=4 SV=1[more]
A0A0A0LU71_CUCSA6.1e-0750.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G060760 PE=4 SV=1[more]
A0A0A0LU71_CUCSA9.8e-0537.93Uncharacterized protein OS=Cucumis sativus GN=Csa_1G060760 PE=4 SV=1[more]
BLAST of Csa1G059750 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209400|gb|KGN64496.1|1.3e-90100.00p55 [Cucumis sativus][more]
gi|659067697|ref|XP_008440827.1|5.7e-2245.34PREDICTED: uncharacterized protein LOC103485133 isoform X1 [Cucumis melo][more]
gi|659067697|ref|XP_008440827.1|6.3e-0535.42PREDICTED: uncharacterized protein LOC103485133 isoform X1 [Cucumis melo][more]
gi|700209403|gb|KGN64499.1|8.8e-0750.00hypothetical protein Csa_1G060760 [Cucumis sativus][more]
gi|700209403|gb|KGN64499.1|1.4e-0437.93hypothetical protein Csa_1G060760 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU108525cucumber EST collection version 3.0transcribed_cluster
CU109074cucumber EST collection version 3.0transcribed_cluster
CU162002cucumber EST collection version 3.0transcribed_cluster
CU175802cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G059750.1Csa1G059750.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU109074CU109074transcribed_cluster
CU175802CU175802transcribed_cluster
CU162002CU162002transcribed_cluster
CU108525CU108525transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G059750Cla019361Watermelon (97103) v1cuwmB008
Csa1G059750MELO3C002437Melon (DHL92) v3.5.1cumeB027
Csa1G059750ClCG03G004530Watermelon (Charleston Gray)cuwcgB035
Csa1G059750Lsi02G005760Bottle gourd (USVL1VR-Ls)culsiB022
Csa1G059750MELO3C002437.2Melon (DHL92) v3.6.1cumedB022
Csa1G059750Cla97C03G055680Watermelon (97103) v2cuwmbB032
Csa1G059750Bhi08G001487Wax gourdcuwgoB033
Csa1G059750CSPI01G10390Wild cucumber (PI 183967)cpicuB000
Csa1G059750Cucsa.085600Cucumber (Gy14) v1cgycuB087
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G059750Cucumber (Gy14) v2cgybcuB001
Csa1G059750Cucumber (Gy14) v2cgybcuB239
Csa1G059750Melon (DHL92) v3.6.1cumedB021
Csa1G059750Melon (DHL92) v3.6.1cumedB077
Csa1G059750Silver-seed gourdcarcuB0523
Csa1G059750Silver-seed gourdcarcuB0661
Csa1G059750Silver-seed gourdcarcuB0945
Csa1G059750Silver-seed gourdcarcuB1020
Csa1G059750Watermelon (97103) v2cuwmbB000
Csa1G059750Cucumber (Chinese Long) v2cucuB035
Csa1G059750Cucumber (Gy14) v1cgycuB015
Csa1G059750Cucurbita maxima (Rimu)cmacuB218
Csa1G059750Cucurbita maxima (Rimu)cmacuB397
Csa1G059750Cucurbita maxima (Rimu)cmacuB649
Csa1G059750Cucurbita maxima (Rimu)cmacuB848
Csa1G059750Cucurbita moschata (Rifu)cmocuB203
Csa1G059750Cucurbita moschata (Rifu)cmocuB380
Csa1G059750Cucurbita moschata (Rifu)cmocuB637
Csa1G059750Cucurbita moschata (Rifu)cmocuB835
Csa1G059750Melon (DHL92) v3.5.1cumeB024
Csa1G059750Melon (DHL92) v3.5.1cumeB026
Csa1G059750Melon (DHL92) v3.5.1cumeB083
Csa1G059750Watermelon (Charleston Gray)cuwcgB012
Csa1G059750Watermelon (97103) v1cuwmB043
Csa1G059750Cucurbita pepo (Zucchini)cpecuB029
Csa1G059750Cucurbita pepo (Zucchini)cpecuB055
Csa1G059750Cucurbita pepo (Zucchini)cpecuB474
Csa1G059750Cucurbita pepo (Zucchini)cpecuB506
Csa1G059750Bottle gourd (USVL1VR-Ls)culsiB019
Csa1G059750Bottle gourd (USVL1VR-Ls)culsiB040