ClCG03G004530 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG03G004530
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr03 : 4873008 .. 4873544 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGACTACAACCAAGTTATAAACAGAGCACTGCATGGTCCTCCATCATCACCCAGTAACAGAAAACCTGCACCCAAATTAATCAAAAGCTCCTCCGATCAGTATTTTCAAGGCGAGCCACATACTCCAGAAGTAGTCCATGGTAAGAAGAGGCCAGCGCCGGTTAGCCCCGGCGACACCCCCCAACATGAGCCGCCAGCCCAAAGGGCACGAACCGACCACTCGGAGGGTTCCAGCTCGGGCGTCCCAATGGATGATCTGATAGTGAAAGTGGAGGAAATGGTTAAGATGCTGAAAAGGGTGAGCGGGAATAAGGATTTGGTGAGTGATCCTTTGTTGGGTTGCTTTGTGTCTGCGCAAACTCTGCTCATGGCTTGTACTGCGGAGCTTATTTCAAGATCAACCACAAAAGCAAAGCGGCCATTAGATCACCAGCGCAGTGAAGGTTCTATTAATTATAGTTCTATTACTGACGGAGCTGCTGATGGAAGTGGAGAGAAAAAGAAGATTAAGAAGTCTAAATCCACCAATTAA

mRNA sequence

ATGGGTGACTACAACCAAGTTATAAACAGAGCACTGCATGGTCCTCCATCATCACCCAGTAACAGAAAACCTGCACCCAAATTAATCAAAAGCTCCTCCGATCAGTATTTTCAAGGCGAGCCACATACTCCAGAAGTAGTCCATGGTAAGAAGAGGCCAGCGCCGGTTAGCCCCGGCGACACCCCCCAACATGAGCCGCCAGCCCAAAGGGCACGAACCGACCACTCGGAGGGTTCCAGCTCGGGCGTCCCAATGGATGATCTGATAGTGAAAGTGGAGGAAATGGTTAAGATGCTGAAAAGGGTGAGCGGGAATAAGGATTTGGTGAGTGATCCTTTGTTGGGTTGCTTTGTGTCTGCGCAAACTCTGCTCATGGCTTGTACTGCGGAGCTTATTTCAAGATCAACCACAAAAGCAAAGCGGCCATTAGATCACCAGCGCAGTGAAGGTTCTATTAATTATAGTTCTATTACTGACGGAGCTGCTGATGGAAGTGGAGAGAAAAAGAAGATTAAGAAGTCTAAATCCACCAATTAA

Coding sequence (CDS)

ATGGGTGACTACAACCAAGTTATAAACAGAGCACTGCATGGTCCTCCATCATCACCCAGTAACAGAAAACCTGCACCCAAATTAATCAAAAGCTCCTCCGATCAGTATTTTCAAGGCGAGCCACATACTCCAGAAGTAGTCCATGGTAAGAAGAGGCCAGCGCCGGTTAGCCCCGGCGACACCCCCCAACATGAGCCGCCAGCCCAAAGGGCACGAACCGACCACTCGGAGGGTTCCAGCTCGGGCGTCCCAATGGATGATCTGATAGTGAAAGTGGAGGAAATGGTTAAGATGCTGAAAAGGGTGAGCGGGAATAAGGATTTGGTGAGTGATCCTTTGTTGGGTTGCTTTGTGTCTGCGCAAACTCTGCTCATGGCTTGTACTGCGGAGCTTATTTCAAGATCAACCACAAAAGCAAAGCGGCCATTAGATCACCAGCGCAGTGAAGGTTCTATTAATTATAGTTCTATTACTGACGGAGCTGCTGATGGAAGTGGAGAGAAAAAGAAGATTAAGAAGTCTAAATCCACCAATTAA

Protein sequence

MGDYNQVINRALHGPPSSPSNRKPAPKLIKSSSDQYFQGEPHTPEVVHGKKRPAPVSPGDTPQHEPPAQRARTDHSEGSSSGVPMDDLIVKVEEMVKMLKRVSGNKDLVSDPLLGCFVSAQTLLMACTAELISRSTTKAKRPLDHQRSEGSINYSSITDGAADGSGEKKKIKKSKSTN

Homology

[Close]

BLAST of ClCG03G004530 vs. TrEMBL
Match: A0A0A0LX14_CUCSA (p55 OS=Cucumis sativus GN=Csa_1G059750 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 3.6e-42
Identity = 110/165 (66.67%), Postives = 120/165 (72.73%), Query Frame = 1


Query: 12  LHGPPSSPSNRKPAPKLIKSSSDQYFQGEPHTPEVVHGKKRPAPVSPGDTPQHE-PPAQR 71
           +  PPSSPS +K  PK    SS      EP TP+ VHGKKRPAPVSP D  QH+ PP Q+
Sbjct: 11  IFNPPSSPS-KKNTPKFPGRSSV-----EPQTPDPVHGKKRPAPVSPNDDFQHDRPPTQK 70

Query: 72  ARTDHSE-GSSSGVPMDDLIVKVEEMVKMLKRVSGNKD-LVSDPLLGCFVSAQTLLMACT 131
            +TD++E GSSS VPM DLI KVE+MVKMLKRV   KD LVSDPLL CFVSAQ LL ACT
Sbjct: 71  RKTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALLTACT 130

Query: 132 AELISRSTTKAKRPLDHQRSEGSINYSSITDGAADGSGEKKKIKK 174
           AELISRST KAK PL HQ S+ SINY S T  AA GSGE KKIKK
Sbjct: 131 AELISRSTRKAK-PLVHQHSDLSINYGSTTT-AAGGSGETKKIKK 167

[Close]

BLAST of ClCG03G004530 vs. TrEMBL
Match: A0A0A0LRJ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G060770 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 8.4e-15
Identity = 57/99 (57.58%), Postives = 66/99 (66.67%), Query Frame = 1


Query: 77  EGSSS-GVPMDDLIVKVEEMVKMLKRVSGNKD-LVSDPLLGCFVSAQTLLMACTAELISR 136
           EGSSS G   DDLIVK+EE V+ +K V   KD LVS PLL CFV+AQTLL+ CT +L   
Sbjct: 44  EGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYT 103

Query: 137 STTKAKRPLDHQRSEGSINYSSITDGAADGSGEKKKIKK 174
           ST       DHQRSE S+  SS T+ AAD S E+ KIKK
Sbjct: 104 STG------DHQRSEVSVKDSSTTNEAADRSVEENKIKK 136

[Close]

BLAST of ClCG03G004530 vs. TrEMBL
Match: A0A0A0LU71_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G060760 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.5e-08
Identity = 37/67 (55.22%), Postives = 43/67 (64.18%), Query Frame = 1


Query: 66  PPAQRARTDHSEGSSSGVPMDDLIVKVEEMVKMLKRVSGNKDLVSDPLLGCFVSAQTLLM 125
           P   +     S GSS   P+DDL VKV EMV MLK  S    +++ PLL CFVSAQTLLM
Sbjct: 81  PTENKKALPPSSGSSLTAPLDDLKVKVNEMVNMLK--SEGHLVINGPLLACFVSAQTLLM 140

Query: 126 ACTAELI 133
           ACT EL+
Sbjct: 141 ACTTELL 145

[Close]

BLAST of ClCG03G004530 vs. TrEMBL
Match: A0A0A0LU71_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G060760 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.1e-03
Identity = 29/53 (54.72%), Postives = 35/53 (66.04%), Query Frame = 1


Query: 80  SSGVPMDDLIVKVEEMVKMLKRVSGNKD-LVSDPLLGCFVSAQTLLMACTAEL 132
           SS +   DLI+K EE +K +K     KD L +  LLGCF SAQTLL+ACTA L
Sbjct: 28  SSSLATKDLILKTEETIKKVKSECWKKDNLATGSLLGCFESAQTLLVACTAVL 80

[Close]

BLAST of ClCG03G004530 vs. NCBI nr
Match: gi|700209400|gb|KGN64496.1| (p55 [Cucumis sativus])

HSP 1 Score: 179.5 bits (454), Expect = 5.2e-42
Identity = 110/165 (66.67%), Postives = 120/165 (72.73%), Query Frame = 1


Query: 12  LHGPPSSPSNRKPAPKLIKSSSDQYFQGEPHTPEVVHGKKRPAPVSPGDTPQHE-PPAQR 71
           +  PPSSPS +K  PK    SS      EP TP+ VHGKKRPAPVSP D  QH+ PP Q+
Sbjct: 11  IFNPPSSPS-KKNTPKFPGRSSV-----EPQTPDPVHGKKRPAPVSPNDDFQHDRPPTQK 70

Query: 72  ARTDHSE-GSSSGVPMDDLIVKVEEMVKMLKRVSGNKD-LVSDPLLGCFVSAQTLLMACT 131
            +TD++E GSSS VPM DLI KVE+MVKMLKRV   KD LVSDPLL CFVSAQ LL ACT
Sbjct: 71  RKTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALLTACT 130

Query: 132 AELISRSTTKAKRPLDHQRSEGSINYSSITDGAADGSGEKKKIKK 174
           AELISRST KAK PL HQ S+ SINY S T  AA GSGE KKIKK
Sbjct: 131 AELISRSTRKAK-PLVHQHSDLSINYGSTTT-AAGGSGETKKIKK 167

[Close]

BLAST of ClCG03G004530 vs. NCBI nr
Match: gi|659067697|ref|XP_008440827.1| (PREDICTED: uncharacterized protein LOC103485133 isoform X1 [Cucumis melo])

HSP 1 Score: 119.8 bits (299), Expect = 4.9e-24
Identity = 78/167 (46.71%), Postives = 102/167 (61.08%), Query Frame = 1


Query: 6   QVINRALHGPPSSPSNRKPAPKLIKSSSDQYFQGEPHTPEVVHGKKRPAPVSPGDTPQHE 65
           Q+++ +    PSSPS    +     ++SD   +  P TPE   GKK     S  +  + +
Sbjct: 195 QLLSASTVNEPSSPSKLSAS-----NNSDPNIEVGPDTPENSRGKKTSGSNSRDNRSEEK 254

Query: 66  PPAQ-RARTDHSEGSSSGVPMDDLIVKVEEMVKMLKRVSGNKDLVSDPLLGCFVSAQTLL 125
              + +A+TD + GSS  VP+DDLI +++EMV MLK       LV+ PLLGCFVSAQTLL
Sbjct: 255 RETKIKAQTDQNSGSSLTVPLDDLIARMKEMVNMLK---SEGRLVNSPLLGCFVSAQTLL 314

Query: 126 MACTAELISRSTTKAKRPLDHQRSEGSINYSSIT--DGAADGSGEKK 170
           MAC  EL+S S  K+K  L HQ SE S+NYSS T  D AADG+GEKK
Sbjct: 315 MACATELLSISIGKSK-ALHHQGSEISVNYSSTTTNDTAADGNGEKK 352

[Close]

BLAST of ClCG03G004530 vs. NCBI nr
Match: gi|659067697|ref|XP_008440827.1| (PREDICTED: uncharacterized protein LOC103485133 isoform X1 [Cucumis melo])

HSP 1 Score: 72.4 bits (176), Expect = 9.0e-10
Identity = 59/163 (36.20%), Postives = 81/163 (49.69%), Query Frame = 1


Query: 17  SSPSNRKPAPKLIKSSSDQYFQGEPHTPEVVHGKKRPAPVSPGDTPQHEPPAQRARTDHS 76
           SSPSN         ++S+   +  P      HG++R    S  DT +HE   +R +    
Sbjct: 92  SSPSN---------NNSNSISKPGPTEDTQSHGRRRTRSPSLDDTSEHEHRDKRLKL--K 151

Query: 77  EGSSSGVP-MDDLIVKVEEMVKMLKRVSGNKDLVSDPLLGCFVSAQTLLMACTAELISRS 136
           EG SSGV  +DDLI +VEE+VK LK V G KD V+ PLL  F+SA T L   T +L+S S
Sbjct: 152 EGWSSGVDRLDDLIERVEELVKKLKGVDGKKDSVNGPLLASFMSAFTQLENWTEQLLSAS 211

Query: 137 TTKAKRPLDHQRSEGSINYSSITDGAADGSGEKKKIKKSKSTN 179
           T     P    +   S N     +   D + E  + KK+  +N
Sbjct: 212 T--VNEPSSPSKLSASNNSDPNIEVGPD-TPENSRGKKTSGSN 240

HSP 2 Score: 42.4 bits (98), Expect = 9.9e-01
Identity = 32/75 (42.67%), Postives = 39/75 (52.00%), Query Frame = 1


Query: 60  DTPQHEPPAQRARTDHSEGSSSGVPMDDLIVKVEEMVKMLKRVSGNKDLVSDPLLGCFVS 119
           DT QH            + SS  V +  LIVK+EE VK +K VSG K  +SD LL  F S
Sbjct: 5   DTTQHNTM--------EDWSSRNVSVHFLIVKLEETVKKMKSVSGKK-AISDCLLAWFSS 64

Query: 120 AQTLLMACTAELISR 135
           A   L A T E+ S+
Sbjct: 65  AYNQLEARTNEVFSK 70

HSP 3 Score: 88.6 bits (218), Expect = 1.2e-14
Identity = 57/99 (57.58%), Postives = 66/99 (66.67%), Query Frame = 1


Query: 77  EGSSS-GVPMDDLIVKVEEMVKMLKRVSGNKD-LVSDPLLGCFVSAQTLLMACTAELISR 136
           EGSSS G   DDLIVK+EE V+ +K V   KD LVS PLL CFV+AQTLL+ CT +L   
Sbjct: 44  EGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYT 103

Query: 137 STTKAKRPLDHQRSEGSINYSSITDGAADGSGEKKKIKK 174
           ST       DHQRSE S+  SS T+ AAD S E+ KIKK
Sbjct: 104 STG------DHQRSEVSVKDSSTTNEAADRSVEENKIKK 136

[Close]

BLAST of ClCG03G004530 vs. NCBI nr
Match: gi|700209403|gb|KGN64499.1| (hypothetical protein Csa_1G060760 [Cucumis sativus])

HSP 1 Score: 66.2 bits (160), Expect = 6.4e-08
Identity = 37/67 (55.22%), Postives = 43/67 (64.18%), Query Frame = 1


Query: 66  PPAQRARTDHSEGSSSGVPMDDLIVKVEEMVKMLKRVSGNKDLVSDPLLGCFVSAQTLLM 125
           P   +     S GSS   P+DDL VKV EMV MLK  S    +++ PLL CFVSAQTLLM
Sbjct: 81  PTENKKALPPSSGSSLTAPLDDLKVKVNEMVNMLK--SEGHLVINGPLLACFVSAQTLLM 140

Query: 126 ACTAELI 133
           ACT EL+
Sbjct: 141 ACTTELL 145

[Close]

BLAST of ClCG03G004530 vs. NCBI nr
Match: gi|700209403|gb|KGN64499.1| (hypothetical protein Csa_1G060760 [Cucumis sativus])

HSP 1 Score: 51.6 bits (122), Expect = 1.6e-03
Identity = 29/53 (54.72%), Postives = 35/53 (66.04%), Query Frame = 1


Query: 80  SSGVPMDDLIVKVEEMVKMLKRVSGNKD-LVSDPLLGCFVSAQTLLMACTAEL 132
           SS +   DLI+K EE +K +K     KD L +  LLGCF SAQTLL+ACTA L
Sbjct: 28  SSSLATKDLILKTEETIKKVKSECWKKDNLATGSLLGCFESAQTLLVACTAVL 80

The following BLAST results are available for this feature:

BLAST of ClCG03G004530 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LX14_CUCSA	3.6e-42	66.67	p55 OS=Cucumis sativus GN=Csa_1G059750 PE=4 SV=1	[more]
A0A0A0LRJ2_CUCSA	8.4e-15	57.58	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G060770 PE=4 SV=1	[more]
A0A0A0LU71_CUCSA	4.5e-08	55.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G060760 PE=4 SV=1	[more]
A0A0A0LU71_CUCSA	1.1e-03	54.72	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G060760 PE=4 SV=1	[more]

BLAST of ClCG03G004530 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209400\|gb\|KGN64496.1\|	5.2e-42	66.67	p55 [Cucumis sativus]	[more]
gi\|659067697\|ref\|XP_008440827.1\|	4.9e-24	46.71	PREDICTED: uncharacterized protein LOC103485133 isoform X1 [Cucumis melo]	[more]
gi\|659067697\|ref\|XP_008440827.1\|	9.0e-10	36.20	PREDICTED: uncharacterized protein LOC103485133 isoform X1 [Cucumis melo]	[more]
gi\|700209403\|gb\|KGN64499.1\|	6.4e-08	55.22	hypothetical protein Csa_1G060760 [Cucumis sativus]	[more]
gi\|700209403\|gb\|KGN64499.1\|	1.6e-03	54.72	hypothetical protein Csa_1G060760 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G004530.1	ClCG03G004530.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG03G004530	Csa1G059750	Cucumber (Chinese Long) v2	cuwcgB035
ClCG03G004530	MELO3C002437	Melon (DHL92) v3.5.1	mewcgB152
ClCG03G004530	Cla019361	Watermelon (97103) v1	wcgwmB223
ClCG03G004530	Cla97C03G055680	Watermelon (97103) v2	wcgwmbB186
ClCG03G004530	Bhi08G001487	Wax gourd	wcgwgoB343
ClCG03G004530	CSPI01G10390	Wild cucumber (PI 183967)	cpiwcgB038
ClCG03G004530	Cucsa.085600	Cucumber (Gy14) v1	cgywcgB095
ClCG03G004530	Lsi02G005760	Bottle gourd (USVL1VR-Ls)	lsiwcgB184
ClCG03G004530	CsGy1G010380	Cucumber (Gy14) v2	cgybwcgB033
ClCG03G004530	MELO3C002437.2	Melon (DHL92) v3.6.1	medwcgB144
ClCG03G004530	CsaV3_1G010500	Cucumber (Chinese Long) v3	cucwcgB038

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG03G004530	Melon (DHL92) v3.6.1	medwcgB143
ClCG03G004530	Melon (DHL92) v3.6.1	medwcgB519
ClCG03G004530	Silver-seed gourd	carwcgB0480
ClCG03G004530	Silver-seed gourd	carwcgB0626
ClCG03G004530	Silver-seed gourd	carwcgB0908
ClCG03G004530	Silver-seed gourd	carwcgB0981
ClCG03G004530	Cucumber (Chinese Long) v3	cucwcgB060
ClCG03G004530	Cucumber (Chinese Long) v3	cucwcgB480
ClCG03G004530	Watermelon (97103) v2	wcgwmbB172
ClCG03G004530	Watermelon (Charleston Gray)	wcgwcgB091
ClCG03G004530	Cucumber (Gy14) v1	cgywcgB025
ClCG03G004530	Cucurbita maxima (Rimu)	cmawcgB197
ClCG03G004530	Cucurbita maxima (Rimu)	cmawcgB358
ClCG03G004530	Cucurbita maxima (Rimu)	cmawcgB584
ClCG03G004530	Cucurbita maxima (Rimu)	cmawcgB760
ClCG03G004530	Cucurbita moschata (Rifu)	cmowcgB187
ClCG03G004530	Cucurbita moschata (Rifu)	cmowcgB350
ClCG03G004530	Cucurbita moschata (Rifu)	cmowcgB583
ClCG03G004530	Cucurbita moschata (Rifu)	cmowcgB761
ClCG03G004530	Wild cucumber (PI 183967)	cpiwcgB482
ClCG03G004530	Cucumber (Chinese Long) v2	cuwcgB460
ClCG03G004530	Melon (DHL92) v3.5.1	mewcgB151
ClCG03G004530	Melon (DHL92) v3.5.1	mewcgB524
ClCG03G004530	Watermelon (97103) v1	wcgwmB237
ClCG03G004530	Cucurbita pepo (Zucchini)	cpewcgB036
ClCG03G004530	Cucurbita pepo (Zucchini)	cpewcgB070
ClCG03G004530	Cucurbita pepo (Zucchini)	cpewcgB430
ClCG03G004530	Cucurbita pepo (Zucchini)	cpewcgB463
ClCG03G004530	Bottle gourd (USVL1VR-Ls)	lsiwcgB134
ClCG03G004530	Cucumber (Gy14) v2	cgybwcgB421