CsaV3_1G010500 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G010500
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionp55
Locationchr1 : 6537904 .. 6539349 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TAATTTTACTGTAATTGAATCAATATGAGTTATAATGACCAACAAAGTATATCAGACAGTATTTATAACTAAGAGGTAAGAGGTTTATAACTAACAGGTTTGCGATTTGAATCTTTCTTTCCTATGGTTGTTGTACCAAGTGGAAAATATACTTATTTTGGTGAGTGTGCAATAAAAAATCGGGAAAATGACTACGTTTGATAGTTGACTAGAAGGGATGTTGACCATTATTGTAGATCTAGATCAGTACACATTGTAAGGTGGTGGTGGTATTGTTTTAACTTTCTATCTATATATGTGAGCTTTGAAAAGTTGATTATTAGGCCTACAAACACAACACAACACCATGGGGGGTGAGTTAAACCTTGCTCATGGGATCTTTAATCCCCCCTCATCACCCAGTAAAAAAAACACACCCAAATTCCCTGGAAGGTCGTCCGTTGAGCCACAGACACCGGATCCAGTTCATGGTAAGAAGAGGCCGGCGCCTGTTAGCCCCAACGACGACTTCCAACATGATCGTCCCCCAACTCAAAAGCGAAAAACCGATAACGCAGAGGAGGGTTCAAGCTCGGACGTGCCAATGAAAGATCTGATAGAGAAAGTTGAAGACATGGTTAAGATGCTGAAAAGGGTGGGCCGGAAAAAGGATAAATTGGTGAGTGATCCTTTGTTGGCTTGCTTTGTGTCTGCCCAGGCTCTGCTTACGGCTTGCACTGCTGAGCTTATTTCTAGATCTACTAGAAAAGCAAAGCCGCTAGTTCACCAGCACAGTGATCTCTCTATTAATTATGGTTCTACTACTACTGCTGCTGGTGGAAGTGGAGAGACGAAGAAAATTAAAAAAGTATAAACAGTCCGCCAAGTAGTCAACCTTAATCCTCCAACAAGAAACTCTCCAATTCTCTAATTATCAGAATATTATTGTTACTATTTTACTTTTCTTTCTTCTTTTTTGTAATAATGTTATGTTTTATTAGATCCACATCTCGTGCTGTCTTAACACTTTTCCTTTTGTTCAAATAAAATTATTATTATTATTTTAGCAGAAAAAGTATATATTATGAAAACCATTTTATTGATGATTATGATATCAGTAGTAAAAAATTGGACTTTAATGATGGTTTAACCAACATTAAAGATCTTTAATGTTGATTGGTTGTATTATAAAATTCTTTTAATGTCGGTTTAATCTGACATCTTTGATAGTGTTTTTTTTAATTAGGATACGACTTGGATCAGTAGGTGCACCCAAGCATCCCTACTAGATGGCCACCCTTTTAGCACCCTTATTATCTTCCATCAAAATTTCATTCAATGATGCACAAGGTCATGATGATCAAAATAAAGGCATTTAGTGTCGGTTGGGTTTGATGTAGTTTTAAAACTGACATTAAAAATCCTCAATAATGTCAGTTTAAAAGTGACATTAAAGCCTTGTTTTTG

mRNA sequence

ATGGGGGGTGAGTTAAACCTTGCTCATGGGATCTTTAATCCCCCCTCATCACCCAGTAAAAAAAACACACCCAAATTCCCTGGAAGGTCGTCCGTTGAGCCACAGACACCGGATCCAGTTCATGGTAAGAAGAGGCCGGCGCCTGTTAGCCCCAACGACGACTTCCAACATGATCGTCCCCCAACTCAAAAGCGAAAAACCGATAACGCAGAGGAGGGTTCAAGCTCGGACGTGCCAATGAAAGATCTGATAGAGAAAGTTGAAGACATGGTTAAGATGCTGAAAAGGGTGGGCCGGAAAAAGGATAAATTGGTGAGTGATCCTTTGTTGGCTTGCTTTGTGTCTGCCCAGGCTCTGCTTACGGCTTGCACTGCTGAGCTTATTTCTAGATCTACTAGAAAAGCAAAGCCGCTAGTTCACCAGCACAGTGATCTCTCTATTAATTATGGTTCTACTACTACTGCTGCTGGTGGAAGTGGAGAGACGAAGAAAATTAAAAAAGTATAA

Coding sequence (CDS)

ATGGGGGGTGAGTTAAACCTTGCTCATGGGATCTTTAATCCCCCCTCATCACCCAGTAAAAAAAACACACCCAAATTCCCTGGAAGGTCGTCCGTTGAGCCACAGACACCGGATCCAGTTCATGGTAAGAAGAGGCCGGCGCCTGTTAGCCCCAACGACGACTTCCAACATGATCGTCCCCCAACTCAAAAGCGAAAAACCGATAACGCAGAGGAGGGTTCAAGCTCGGACGTGCCAATGAAAGATCTGATAGAGAAAGTTGAAGACATGGTTAAGATGCTGAAAAGGGTGGGCCGGAAAAAGGATAAATTGGTGAGTGATCCTTTGTTGGCTTGCTTTGTGTCTGCCCAGGCTCTGCTTACGGCTTGCACTGCTGAGCTTATTTCTAGATCTACTAGAAAAGCAAAGCCGCTAGTTCACCAGCACAGTGATCTCTCTATTAATTATGGTTCTACTACTACTGCTGCTGGTGGAAGTGGAGAGACGAAGAAAATTAAAAAAGTATAA

Protein sequence

MGGELNLAHGIFNPPSSPSKKNTPKFPGRSSVEPQTPDPVHGKKRPAPVSPNDDFQHDRPPTQKRKTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALLTACTAELISRSTRKAKPLVHQHSDLSINYGSTTTAAGGSGETKKIKKV
Homology
[Close]
BLAST of CsaV3_1G010500 vs. NCBI nr
Match: KGN64496.1 (p55 [Cucumis sativus])

HSP 1 Score: 327.4 bits (838), Expect = 2.9e-86
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0 

Query: 1   MGGELNLAHGIFNPPSSPSKKNTPKFPGRSSVEPQTPDPVHGKKRPAPVSPNDDFQHDRP 60
           MGGELNLAHGIFNPPSSPSKKNTPKFPGRSSVEPQTPDPVHGKKRPAPVSPNDDFQHDRP
Sbjct: 1   MGGELNLAHGIFNPPSSPSKKNTPKFPGRSSVEPQTPDPVHGKKRPAPVSPNDDFQHDRP 60

Query: 61  PTQKRKTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALL 120
           PTQKRKTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALL
Sbjct: 61  PTQKRKTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALL 120

Query: 121 TACTAELISRSTRKAKPLVHQHSDLSINYGSTTTAAGGSGETKKIKKV 169
           TACTAELISRSTRKAKPLVHQHSDLSINYGSTTTAAGGSGETKKIKKV
Sbjct: 121 TACTAELISRSTRKAKPLVHQHSDLSINYGSTTTAAGGSGETKKIKKV 168

[Close]
BLAST of CsaV3_1G010500 vs. NCBI nr
Match: XP_008440827.1 (PREDICTED: uncharacterized protein LOC103485133 isoform X1 [Cucumis melo] >XP_008440836.1 PREDICTED: uncharacterized protein LOC103485133 isoform X2 [Cucumis melo])

HSP 1 Score: 97.1 bits (240), Expect = 6.3e-17
Identity = 72/161 (44.72%), Postives = 92/161 (57.14%), Query Frame = 0 

Query: 7   LAHGIFNPPSSPSKKNTPKFPGRS-SVEPQTPDPVHGKKRPAPVSPNDDFQHDRPPTQKR 66
           L+    N PSSPSK +       +  V P TP+   GKK       ++  +  R    K 
Sbjct: 197 LSASTVNEPSSPSKLSASNNSDPNIEVGPDTPENSRGKKTSGSNXRDNRSEEKRETKIKA 256

Query: 67  KTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALLTACTA 126
           +TD    GSS  VP+ DLI ++++MV MLK  GR    LV+ PLL CFVSAQ LL AC  
Sbjct: 257 QTDQ-NSGSSLTVPLDDLIARMKEMVNMLKSEGR----LVNSPLLGCFVSAQTLLMACAT 316

Query: 127 ELISRSTRKAKPLVHQHSDLSINYGSTT---TAAGGSGETK 164
           EL+S S  K+K L HQ S++S+NY STT   TAA G+GE K
Sbjct: 317 ELLSISIGKSKALHHQGSEISVNYSSTTTNDTAADGNGEKK 352

[Close]
BLAST of CsaV3_1G010500 vs. NCBI nr
Match: KGN64500.1 (hypothetical protein Csa_1G060770 [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 2.4e-08
Identity = 47/98 (47.96%), Postives = 57/98 (58.16%), Query Frame = 0 

Query: 71  EEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALLTACTAELISR 130
           E  SS      DLI K+E+ V+ +K V  +KD LVS PLLACFV+AQ LL  CT +L   
Sbjct: 44  EGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYT 103

Query: 131 STRKAKPLVHQHSDLSINYGSTTT-AAGGSGETKKIKK 168
           ST       HQ S++S+   STT  AA  S E  KIKK
Sbjct: 104 STGD-----HQRSEVSVKDSSTTNEAADRSVEENKIKK 136

[Close]
BLAST of CsaV3_1G010500 vs. NCBI nr
Match: KGN64499.1 (hypothetical protein Csa_1G060760 [Cucumis sativus])

HSP 1 Score: 56.6 bits (135), Expect = 9.4e-05
Identity = 34/68 (50.00%), Postives = 42/68 (61.76%), Query Frame = 0 

Query: 61  PTQKRKTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALL 120
           PT+ +K      GSS   P+ DL  KV +MV MLK  G     +++ PLLACFVSAQ LL
Sbjct: 81  PTENKKALPPSSGSSLTAPLDDLKVKVNEMVNMLKSEGH---LVINGPLLACFVSAQTLL 140

Query: 121 TACTAELI 129
            ACT EL+
Sbjct: 141 MACTTELL 145

[Close]
BLAST of CsaV3_1G010500 vs. TrEMBL
Match: tr|A0A0A0LX14|A0A0A0LX14_CUCSA (p55 OS=Cucumis sativus OX=3659 GN=Csa_1G059750 PE=4 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 1.9e-86
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0 

Query: 1   MGGELNLAHGIFNPPSSPSKKNTPKFPGRSSVEPQTPDPVHGKKRPAPVSPNDDFQHDRP 60
           MGGELNLAHGIFNPPSSPSKKNTPKFPGRSSVEPQTPDPVHGKKRPAPVSPNDDFQHDRP
Sbjct: 1   MGGELNLAHGIFNPPSSPSKKNTPKFPGRSSVEPQTPDPVHGKKRPAPVSPNDDFQHDRP 60

Query: 61  PTQKRKTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALL 120
           PTQKRKTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALL
Sbjct: 61  PTQKRKTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALL 120

Query: 121 TACTAELISRSTRKAKPLVHQHSDLSINYGSTTTAAGGSGETKKIKKV 169
           TACTAELISRSTRKAKPLVHQHSDLSINYGSTTTAAGGSGETKKIKKV
Sbjct: 121 TACTAELISRSTRKAKPLVHQHSDLSINYGSTTTAAGGSGETKKIKKV 168

[Close]
BLAST of CsaV3_1G010500 vs. TrEMBL
Match: tr|A0A1S3B2P2|A0A1S3B2P2_CUCME (uncharacterized protein LOC103485133 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485133 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 4.2e-17
Identity = 72/161 (44.72%), Postives = 92/161 (57.14%), Query Frame = 0 

Query: 7   LAHGIFNPPSSPSKKNTPKFPGRS-SVEPQTPDPVHGKKRPAPVSPNDDFQHDRPPTQKR 66
           L+    N PSSPSK +       +  V P TP+   GKK       ++  +  R    K 
Sbjct: 197 LSASTVNEPSSPSKLSASNNSDPNIEVGPDTPENSRGKKTSGSNXRDNRSEEKRETKIKA 256

Query: 67  KTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALLTACTA 126
           +TD    GSS  VP+ DLI ++++MV MLK  GR    LV+ PLL CFVSAQ LL AC  
Sbjct: 257 QTDQ-NSGSSLTVPLDDLIARMKEMVNMLKSEGR----LVNSPLLGCFVSAQTLLMACAT 316

Query: 127 ELISRSTRKAKPLVHQHSDLSINYGSTT---TAAGGSGETK 164
           EL+S S  K+K L HQ S++S+NY STT   TAA G+GE K
Sbjct: 317 ELLSISIGKSKALHHQGSEISVNYSSTTTNDTAADGNGEKK 352

[Close]
BLAST of CsaV3_1G010500 vs. TrEMBL
Match: tr|A0A0A0LRJ2|A0A0A0LRJ2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G060770 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.6e-08
Identity = 47/98 (47.96%), Postives = 57/98 (58.16%), Query Frame = 0 

Query: 71  EEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALLTACTAELISR 130
           E  SS      DLI K+E+ V+ +K V  +KD LVS PLLACFV+AQ LL  CT +L   
Sbjct: 44  EGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYT 103

Query: 131 STRKAKPLVHQHSDLSINYGSTTT-AAGGSGETKKIKK 168
           ST       HQ S++S+   STT  AA  S E  KIKK
Sbjct: 104 STGD-----HQRSEVSVKDSSTTNEAADRSVEENKIKK 136

[Close]
BLAST of CsaV3_1G010500 vs. TrEMBL
Match: tr|A0A0A0LU71|A0A0A0LU71_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G060760 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 6.2e-05
Identity = 34/68 (50.00%), Postives = 42/68 (61.76%), Query Frame = 0 

Query: 61  PTQKRKTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALL 120
           PT+ +K      GSS   P+ DL  KV +MV MLK  G     +++ PLLACFVSAQ LL
Sbjct: 81  PTENKKALPPSSGSSLTAPLDDLKVKVNEMVNMLKSEGH---LVINGPLLACFVSAQTLL 140

Query: 121 TACTAELI 129
            ACT EL+
Sbjct: 141 MACTTELL 145

The following BLAST results are available for this feature:
BLAST of CsaV3_1G010500 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64496.12.9e-86100.00p55 [Cucumis sativus][more]
XP_008440827.16.3e-1744.72PREDICTED: uncharacterized protein LOC103485133 isoform X1 [Cucumis melo] >XP_00... [more]
KGN64500.12.4e-0847.96hypothetical protein Csa_1G060770 [Cucumis sativus][more]
KGN64499.19.4e-0550.00hypothetical protein Csa_1G060760 [Cucumis sativus][more]
BLAST of CsaV3_1G010500 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G010500 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G010500 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LX14|A0A0A0LX14_CUCSA1.9e-86100.00p55 OS=Cucumis sativus OX=3659 GN=Csa_1G059750 PE=4 SV=1[more]
tr|A0A1S3B2P2|A0A1S3B2P2_CUCME4.2e-1744.72uncharacterized protein LOC103485133 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A0A0LRJ2|A0A0A0LRJ2_CUCSA1.6e-0847.96Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G060770 PE=4 SV=1[more]
tr|A0A0A0LU71|A0A0A0LU71_CUCSA6.2e-0550.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G060760 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G010500.1CsaV3_1G010500.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 12..30
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..83
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 47..72

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G010500CSPI01G10390Wild cucumber (PI 183967)cpicucB001
CsaV3_1G010500CSPI01G10460Wild cucumber (PI 183967)cpicucB010
CsaV3_1G010500Cucsa.085600Cucumber (Gy14) v1cgycucB089
CsaV3_1G010500Cla019361Watermelon (97103) v1cucwmB013
CsaV3_1G010500MELO3C002437Melon (DHL92) v3.5.1cucmeB024
CsaV3_1G010500ClCG03G004530Watermelon (Charleston Gray)cucwcgB038
CsaV3_1G010500Lsi02G005760Bottle gourd (USVL1VR-Ls)cuclsiB022
CsaV3_1G010500MELO3C002437.2Melon (DHL92) v3.6.1cucmedB022
CsaV3_1G010500Cla97C03G055680Watermelon (97103) v2cucwmbB030
CsaV3_1G010500Bhi08G001487Wax gourdcucwgoB037
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G010500Cucumber (Chinese Long) v3cuccucB044
CsaV3_1G010500Silver-seed gourdcarcucB0529
CsaV3_1G010500Silver-seed gourdcarcucB0672
CsaV3_1G010500Silver-seed gourdcarcucB0969
CsaV3_1G010500Silver-seed gourdcarcucB1049
CsaV3_1G010500Cucumber (Gy14) v2cgybcucB002
CsaV3_1G010500Cucumber (Gy14) v2cgybcucB247
CsaV3_1G010500Cucumber (Gy14) v1cgycucB018
CsaV3_1G010500Cucurbita maxima (Rimu)cmacucB0249
CsaV3_1G010500Cucurbita maxima (Rimu)cmacucB0474
CsaV3_1G010500Cucurbita maxima (Rimu)cmacucB0775
CsaV3_1G010500Cucurbita maxima (Rimu)cmacucB1005
CsaV3_1G010500Cucurbita moschata (Rifu)cmocucB0235
CsaV3_1G010500Cucurbita moschata (Rifu)cmocucB0457
CsaV3_1G010500Cucurbita moschata (Rifu)cmocucB0760
CsaV3_1G010500Cucurbita moschata (Rifu)cmocucB0989
CsaV3_1G010500Cucurbita pepo (Zucchini)cpecucB0031
CsaV3_1G010500Cucurbita pepo (Zucchini)cpecucB0059
CsaV3_1G010500Cucurbita pepo (Zucchini)cpecucB0586
CsaV3_1G010500Cucurbita pepo (Zucchini)cpecucB0624
CsaV3_1G010500Wild cucumber (PI 183967)cpicucB009
CsaV3_1G010500Wild cucumber (PI 183967)cpicucB310
CsaV3_1G010500Bottle gourd (USVL1VR-Ls)cuclsiB020
CsaV3_1G010500Bottle gourd (USVL1VR-Ls)cuclsiB029
CsaV3_1G010500Melon (DHL92) v3.5.1cucmeB035
CsaV3_1G010500Melon (DHL92) v3.5.1cucmeB092
CsaV3_1G010500Melon (DHL92) v3.6.1cucmedB032
CsaV3_1G010500Melon (DHL92) v3.6.1cucmedB085
CsaV3_1G010500Watermelon (Charleston Gray)cucwcgB015
CsaV3_1G010500Watermelon (97103) v1cucwmB050
CsaV3_1G010500Watermelon (97103) v2cucwmbB001
CsaV3_1G010500Watermelon (97103) v2cucwmbB040