CSPI01G10460 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G10460
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
Descriptionp55
LocationChr1 : 6582619 .. 6583451 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTTTTTTAAAATAGTGAAAAATAGGTTAGGTTTATTTGGCACAGGTTTGGACAATGACGACCAATAATGATATAAAGATAGGTAGATGTGATTTGGAGTTTGATGATAAGGCACAACACACAATATCATGAGAGGAAACAAGAATTTTTGTAACGATGAACTTATTTGTTCGAAAAGCAACTCCGTCAAAAGTTCACAAGTGAAGGGTTCGAGCAGCCTAGCAACAAAAGATCTGATACTGAAAACGGAGGAAACAATTAAGAAGGTGAAAAGCGAGTGCTGGAAAAAGGATAATTTGGCGAGAGGTTCTTTGTTGGGTTGCTTTGAGTCTGCACAGACTCTGCTCGTGGCATGCACTGCCGTACTGCCAACCGAAAACAAAAAGGCACTACCTCCGAGCTCGGGCTCTTCTCTAACAGCTCCACTGGATGATCTGAAAGTGAAAGTGAATGAAATGGTTAATATGCTGAAAAGTGAAGGACATTTGGTGATCAATGGTTCTTTGTTGGCTTGCTTTGTGTCTGCACAGACTCTCCTCATGGCTTGCACTACCGAGCTTTTGCCCACAACATCAGGCCGGCAGTGAAGGTTCTATATATTAATGATAGTTCTACAACTACTGAGTCTTTTAATTTTCTTTCTTTTTTTTTCGTTGTGAATGTAGTGTTTGATTGCCTCCACATCTCATGCTTTCTTTAGACTTTTCTTTATGTAGAAATAAAATGAATGTTTTTATTTATGTAATTGAAGTATCTCAAAGATCTAGTTCACATATTAGAGTCGTATAAAATAACAAATAATAAAGAGTGGAACTTGATCACTTGAAATAAAA

mRNA sequence

ATGAGAGGAAACAAGAATTTTTGTAACGATGAACTTATTTGTTCGAAAAGCAACTCCGTCAAAAGTTCACAAGTGAAGGGTTCGAGCAGCCTAGCAACAAAAGATCTGATACTGAAAACGGAGGAAACAATTAAGAAGGTGAAAAGCGAGTGCTGGAAAAAGGATAATTTGGCGAGAGGTTCTTTGTTGGGTTGCTTTGAGTCTGCACAGACTCTGCTCGTGGCATGCACTGCCGTACTGCCAACCGAAAACAAAAAGGCACTACCTCCGAGCTCGGGCTCTTCTCTAACAGCTCCACTGGATGATCTGAAAGTGAAAGTGAATGAAATGGTTAATATGCTGAAAAGTGAAGGACATTTGGTGATCAATGGTTCTTTGTTGGCTTGCTTTGTGTCTGCACAGACTCTCCTCATGGCTTGCACTACCGAGCTTTTGCCCACAACATCAGGCCGGCAGTGA

Coding sequence (CDS)

ATGAGAGGAAACAAGAATTTTTGTAACGATGAACTTATTTGTTCGAAAAGCAACTCCGTCAAAAGTTCACAAGTGAAGGGTTCGAGCAGCCTAGCAACAAAAGATCTGATACTGAAAACGGAGGAAACAATTAAGAAGGTGAAAAGCGAGTGCTGGAAAAAGGATAATTTGGCGAGAGGTTCTTTGTTGGGTTGCTTTGAGTCTGCACAGACTCTGCTCGTGGCATGCACTGCCGTACTGCCAACCGAAAACAAAAAGGCACTACCTCCGAGCTCGGGCTCTTCTCTAACAGCTCCACTGGATGATCTGAAAGTGAAAGTGAATGAAATGGTTAATATGCTGAAAAGTGAAGGACATTTGGTGATCAATGGTTCTTTGTTGGCTTGCTTTGTGTCTGCACAGACTCTCCTCATGGCTTGCACTACCGAGCTTTTGCCCACAACATCAGGCCGGCAGTGA
Homology
[Close]
BLAST of CSPI01G10460 vs. TrEMBL
Match: A0A0A0LU71_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G060760 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 6.9e-74
Identity = 149/152 (98.03%), Postives = 149/152 (98.03%), Query Frame = 1 

Query: 1   MRGNKNFCNDELICSKSNSVKSSQVKGSSSLATKDLILKTEETIKKVKSECWKKDNLARG 60
           MRGNKNF NDELICSKSNSVKSSQVKGSSSLATKDLILKTEETIKKVKSECWKKDNLA G
Sbjct: 1   MRGNKNFSNDELICSKSNSVKSSQVKGSSSLATKDLILKTEETIKKVKSECWKKDNLATG 60

Query: 61  SLLGCFESAQTLLVACTAVLPTENKKALPPSSGSSLTAPLDDLKVKVNEMVNMLKSEGHL 120
           SLLGCFESAQTLLVACTAVLPTENKKALPPSSGSSLTAPLDDLKVKVNEMVNMLKSEGHL
Sbjct: 61  SLLGCFESAQTLLVACTAVLPTENKKALPPSSGSSLTAPLDDLKVKVNEMVNMLKSEGHL 120

Query: 121 VINGSLLACFVSAQTLLMACTTELLPTTSGRQ 153
           VING LLACFVSAQTLLMACTTELLPTTSGRQ
Sbjct: 121 VINGPLLACFVSAQTLLMACTTELLPTTSGRQ 152

[Close]
BLAST of CSPI01G10460 vs. TrEMBL
Match: A0A0A0LRJ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G060770 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 9.5e-07
Identity = 47/115 (40.87%), Postives = 67/115 (58.26%), Query Frame = 1 

Query: 4   NKNFCNDELIC--SKSNSVKSSQVKGSSSL--ATKDLILKTEETIKKVKSECWKKDNLAR 63
           N +  N+ LI    KSN  ++ +V+GSSS   AT DLI+K EET++K+KS   +KDNL  
Sbjct: 20  NIDVMNEPLISVSKKSNENQNLKVEGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVS 79

Query: 64  GSLLGCFESAQTLLVACTAVL----PTENKKALPPSSGSSLTAPLDDLKVKVNEM 111
             LL CF +AQTLLV CT  L      +++++      SS T    D  V+ N++
Sbjct: 80  SPLLACFVAAQTLLVVCTIQLFYTSTGDHQRSEVSVKDSSTTNEAADRSVEENKI 134

[Close]
BLAST of CSPI01G10460 vs. NCBI nr
Match: gi|700209403|gb|KGN64499.1| (hypothetical protein Csa_1G060760 [Cucumis sativus])

HSP 1 Score: 284.6 bits (727), Expect = 9.9e-74
Identity = 149/152 (98.03%), Postives = 149/152 (98.03%), Query Frame = 1 

Query: 1   MRGNKNFCNDELICSKSNSVKSSQVKGSSSLATKDLILKTEETIKKVKSECWKKDNLARG 60
           MRGNKNF NDELICSKSNSVKSSQVKGSSSLATKDLILKTEETIKKVKSECWKKDNLA G
Sbjct: 1   MRGNKNFSNDELICSKSNSVKSSQVKGSSSLATKDLILKTEETIKKVKSECWKKDNLATG 60

Query: 61  SLLGCFESAQTLLVACTAVLPTENKKALPPSSGSSLTAPLDDLKVKVNEMVNMLKSEGHL 120
           SLLGCFESAQTLLVACTAVLPTENKKALPPSSGSSLTAPLDDLKVKVNEMVNMLKSEGHL
Sbjct: 61  SLLGCFESAQTLLVACTAVLPTENKKALPPSSGSSLTAPLDDLKVKVNEMVNMLKSEGHL 120

Query: 121 VINGSLLACFVSAQTLLMACTTELLPTTSGRQ 153
           VING LLACFVSAQTLLMACTTELLPTTSGRQ
Sbjct: 121 VINGPLLACFVSAQTLLMACTTELLPTTSGRQ 152

[Close]
BLAST of CSPI01G10460 vs. NCBI nr
Match: gi|659067697|ref|XP_008440827.1| (PREDICTED: uncharacterized protein LOC103485133 isoform X1 [Cucumis melo])

HSP 1 Score: 80.5 bits (197), Expect = 2.8e-12
Identity = 45/70 (64.29%), Postives = 51/70 (72.86%), Query Frame = 1 

Query: 82  TENKKALPPSSGSSLTAPLDDLKVKVNEMVNMLKSEGHLVINGSLLACFVSAQTLLMACT 141
           T+ K     +SGSSLT PLDDL  ++ EMVNMLKSEG LV N  LL CFVSAQTLLMAC 
Sbjct: 252 TKIKAQTDQNSGSSLTVPLDDLIARMKEMVNMLKSEGRLV-NSPLLGCFVSAQTLLMACA 311

Query: 142 TELLPTTSGR 152
           TELL  + G+
Sbjct: 312 TELLSISIGK 320

[Close]
BLAST of CSPI01G10460 vs. NCBI nr
Match: gi|700209404|gb|KGN64500.1| (hypothetical protein Csa_1G060770 [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 1.4e-06
Identity = 47/115 (40.87%), Postives = 67/115 (58.26%), Query Frame = 1 

Query: 4   NKNFCNDELIC--SKSNSVKSSQVKGSSSL--ATKDLILKTEETIKKVKSECWKKDNLAR 63
           N +  N+ LI    KSN  ++ +V+GSSS   AT DLI+K EET++K+KS   +KDNL  
Sbjct: 20  NIDVMNEPLISVSKKSNENQNLKVEGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVS 79

Query: 64  GSLLGCFESAQTLLVACTAVL----PTENKKALPPSSGSSLTAPLDDLKVKVNEM 111
             LL CF +AQTLLV CT  L      +++++      SS T    D  V+ N++
Sbjct: 80  SPLLACFVAAQTLLVVCTIQLFYTSTGDHQRSEVSVKDSSTTNEAADRSVEENKI 134

The following BLAST results are available for this feature:
BLAST of CSPI01G10460 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G10460 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LU71_CUCSA6.9e-7498.03Uncharacterized protein OS=Cucumis sativus GN=Csa_1G060760 PE=4 SV=1[more]
A0A0A0LRJ2_CUCSA9.5e-0740.87Uncharacterized protein OS=Cucumis sativus GN=Csa_1G060770 PE=4 SV=1[more]
BLAST of CSPI01G10460 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G10460 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209403|gb|KGN64499.1|9.9e-7498.03hypothetical protein Csa_1G060760 [Cucumis sativus][more]
gi|659067697|ref|XP_008440827.1|2.8e-1264.29PREDICTED: uncharacterized protein LOC103485133 isoform X1 [Cucumis melo][more]
gi|700209404|gb|KGN64500.1|1.4e-0640.87hypothetical protein Csa_1G060770 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G10460.1CSPI01G10460.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G10460Csa1G060760Cucumber (Chinese Long) v2cpicuB000
CSPI01G10460MELO3C002436Melon (DHL92) v3.5.1cpimeB024
CSPI01G10460MELO3C002436.2Melon (DHL92) v3.6.1cpimedB023
CSPI01G10460CsaV3_1G010500Cucumber (Chinese Long) v3cpicucB010
CSPI01G10460Cla97C03G055680Watermelon (97103) v2cpiwmbB041
CSPI01G10460Bhi08G001487Wax gourdcpiwgoB047
CSPI01G10460Cucsa.085630Cucumber (Gy14) v1cgycpiB090
CSPI01G10460CsGy1G010410Cucumber (Gy14) v2cgybcpiB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G10460Silver-seed gourdcarcpiB0531
CSPI01G10460Silver-seed gourdcarcpiB0670
CSPI01G10460Silver-seed gourdcarcpiB0968
CSPI01G10460Silver-seed gourdcarcpiB1044
CSPI01G10460Cucumber (Chinese Long) v3cpicucB001
CSPI01G10460Cucumber (Chinese Long) v3cpicucB009
CSPI01G10460Cucumber (Chinese Long) v3cpicucB017
CSPI01G10460Cucumber (Chinese Long) v3cpicucB051
CSPI01G10460Watermelon (97103) v2cpiwmbB001
CSPI01G10460Watermelon (97103) v2cpiwmbB032
CSPI01G10460Wax gourdcpiwgoB033
CSPI01G10460Wild cucumber (PI 183967)cpicpiB038
CSPI01G10460Cucurbita pepo (Zucchini)cpecpiB025
CSPI01G10460Cucumber (Gy14) v1cgycpiB016
CSPI01G10460Cucurbita maxima (Rimu)cmacpiB219
CSPI01G10460Cucurbita maxima (Rimu)cmacpiB401
CSPI01G10460Cucurbita maxima (Rimu)cmacpiB656
CSPI01G10460Cucurbita maxima (Rimu)cmacpiB865
CSPI01G10460Cucurbita moschata (Rifu)cmocpiB205
CSPI01G10460Cucurbita moschata (Rifu)cmocpiB383
CSPI01G10460Cucurbita moschata (Rifu)cmocpiB648
CSPI01G10460Cucurbita moschata (Rifu)cmocpiB845
CSPI01G10460Cucumber (Chinese Long) v2cpicuB044
CSPI01G10460Melon (DHL92) v3.5.1cpimeB036
CSPI01G10460Melon (DHL92) v3.5.1cpimeB086
CSPI01G10460Watermelon (Charleston Gray)cpiwcgB016
CSPI01G10460Watermelon (Charleston Gray)cpiwcgB038
CSPI01G10460Watermelon (97103) v1cpiwmB010
CSPI01G10460Watermelon (97103) v1cpiwmB043
CSPI01G10460Cucurbita pepo (Zucchini)cpecpiB050
CSPI01G10460Cucurbita pepo (Zucchini)cpecpiB474
CSPI01G10460Cucurbita pepo (Zucchini)cpecpiB506
CSPI01G10460Bottle gourd (USVL1VR-Ls)cpilsiB018
CSPI01G10460Bottle gourd (USVL1VR-Ls)cpilsiB021
CSPI01G10460Bottle gourd (USVL1VR-Ls)cpilsiB030
CSPI01G10460Melon (DHL92) v3.6.1cpimedB020
CSPI01G10460Melon (DHL92) v3.6.1cpimedB076
CSPI01G10460Cucumber (Gy14) v2cgybcpiB247