CSPI01G10390.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI01G10390.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
Descriptionp55
LocationChr1 : 6550938 .. 6551793 (-)
Sequence length507
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAAAATATACTTATTTTGGTGAGTGTGCAATAAAAAATCTGGAAAATGACTACGTTTGATAGTTGACTAGAAGGGATGTTGACCATTATTGTAGATCTAGATCAGTACACATTGTAAGGTGGTGGTGGTATTGTTTTAACTTTCTATCTATATATGTGAGCTTTGAAAAGTTGATTATTAGGCCTACAAACACAACACAACACCATGGGGGGTGAGTTAAACCTTGCTCATGGGATCTTTAATCCCCCCTCATCACCCAGTAAAAAAAACACACCCAAATTCCCTGGAAGGTCCTCCGTTGAGCCACAGACACCGGATCCAGTTCATGGTAAGAAGAGGCCGGCGCCTGTTAGCCCCAACGACGACTTCCAACATGATCGTCCCCCAACTCAAAAGCGAAAAACCGATAACGCAGAGGAGGGTTCAAGCTCGGACGTGCCAATGAAAGATCTGATAGAGAAAGTTGAAGACATGGTTAAGATGCTGAAAAGGGTGGGCCGGAAAAAGGATAAATTGGTGAGTGATCCTTTGTTGGCTTGCTTTGTGTCTGCCCAGGCTCTGCTTACGGCTTGCACTGCTGAGCTTATTTCTAGATCTACTAGAAAAGCAAAGCCGCTAGTTCACCAGCACAGTGATCTCTCTATTAATTATGGTTCTACTACTACTGCTGCTGGTGGAAGTGGAGAGACGAAGAAAATTAAAAAAGTATAAACAGTCCGCCAAGTAGTCAACCTTAATCCTCCAACAAGAAACTCTCCAATTCTCTAATTATCAGAATATTATTGTTACTATTTTACTTTTCTTTCTTCTTTTTTGTAATAATGTTATGTTTTATTAGATCCACATCTCGTGCTG

mRNA sequence

ATGGGGGGTGAGTTAAACCTTGCTCATGGGATCTTTAATCCCCCCTCATCACCCAGTAAAAAAAACACACCCAAATTCCCTGGAAGGTCCTCCGTTGAGCCACAGACACCGGATCCAGTTCATGGTAAGAAGAGGCCGGCGCCTGTTAGCCCCAACGACGACTTCCAACATGATCGTCCCCCAACTCAAAAGCGAAAAACCGATAACGCAGAGGAGGGTTCAAGCTCGGACGTGCCAATGAAAGATCTGATAGAGAAAGTTGAAGACATGGTTAAGATGCTGAAAAGGGTGGGCCGGAAAAAGGATAAATTGGTGAGTGATCCTTTGTTGGCTTGCTTTGTGTCTGCCCAGGCTCTGCTTACGGCTTGCACTGCTGAGCTTATTTCTAGATCTACTAGAAAAGCAAAGCCGCTAGTTCACCAGCACAGTGATCTCTCTATTAATTATGGTTCTACTACTACTGCTGCTGGTGGAAGTGGAGAGACGAAGAAAATTAAAAAAGTATAA

Coding sequence (CDS)

ATGGGGGGTGAGTTAAACCTTGCTCATGGGATCTTTAATCCCCCCTCATCACCCAGTAAAAAAAACACACCCAAATTCCCTGGAAGGTCCTCCGTTGAGCCACAGACACCGGATCCAGTTCATGGTAAGAAGAGGCCGGCGCCTGTTAGCCCCAACGACGACTTCCAACATGATCGTCCCCCAACTCAAAAGCGAAAAACCGATAACGCAGAGGAGGGTTCAAGCTCGGACGTGCCAATGAAAGATCTGATAGAGAAAGTTGAAGACATGGTTAAGATGCTGAAAAGGGTGGGCCGGAAAAAGGATAAATTGGTGAGTGATCCTTTGTTGGCTTGCTTTGTGTCTGCCCAGGCTCTGCTTACGGCTTGCACTGCTGAGCTTATTTCTAGATCTACTAGAAAAGCAAAGCCGCTAGTTCACCAGCACAGTGATCTCTCTATTAATTATGGTTCTACTACTACTGCTGCTGGTGGAAGTGGAGAGACGAAGAAAATTAAAAAAGTATAA
Homology
[Close]
BLAST of CSPI01G10390.1 vs. TrEMBL
Match: A0A0A0LX14_CUCSA (p55 OS=Cucumis sativus GN=Csa_1G059750 PE=4 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 1.0e-86
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 1 

Query: 1   MGGELNLAHGIFNPPSSPSKKNTPKFPGRSSVEPQTPDPVHGKKRPAPVSPNDDFQHDRP 60
           MGGELNLAHGIFNPPSSPSKKNTPKFPGRSSVEPQTPDPVHGKKRPAPVSPNDDFQHDRP
Sbjct: 1   MGGELNLAHGIFNPPSSPSKKNTPKFPGRSSVEPQTPDPVHGKKRPAPVSPNDDFQHDRP 60

Query: 61  PTQKRKTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALL 120
           PTQKRKTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALL
Sbjct: 61  PTQKRKTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALL 120

Query: 121 TACTAELISRSTRKAKPLVHQHSDLSINYGSTTTAAGGSGETKKIKKV 169
           TACTAELISRSTRKAKPLVHQHSDLSINYGSTTTAAGGSGETKKIKKV
Sbjct: 121 TACTAELISRSTRKAKPLVHQHSDLSINYGSTTTAAGGSGETKKIKKV 168

[Close]
BLAST of CSPI01G10390.1 vs. TrEMBL
Match: A0A0A0LRJ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G060770 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.6e-09
Identity = 49/98 (50.00%), Postives = 59/98 (60.20%), Query Frame = 1 

Query: 72  EGSSSD-VPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALLTACTAELISR 131
           EGSSS      DLI K+E+ V+ +K V  +KD LVS PLLACFV+AQ LL  CT +L   
Sbjct: 44  EGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYT 103

Query: 132 STRKAKPLVHQHSDLSINYGSTTT-AAGGSGETKKIKK 168
           ST       HQ S++S+   STT  AA  S E  KIKK
Sbjct: 104 STGD-----HQRSEVSVKDSSTTNEAADRSVEENKIKK 136

[Close]
BLAST of CSPI01G10390.1 vs. NCBI nr
Match: gi|700209400|gb|KGN64496.1| (p55 [Cucumis sativus])

HSP 1 Score: 327.4 bits (838), Expect = 1.5e-86
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 1 

Query: 1   MGGELNLAHGIFNPPSSPSKKNTPKFPGRSSVEPQTPDPVHGKKRPAPVSPNDDFQHDRP 60
           MGGELNLAHGIFNPPSSPSKKNTPKFPGRSSVEPQTPDPVHGKKRPAPVSPNDDFQHDRP
Sbjct: 1   MGGELNLAHGIFNPPSSPSKKNTPKFPGRSSVEPQTPDPVHGKKRPAPVSPNDDFQHDRP 60

Query: 61  PTQKRKTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALL 120
           PTQKRKTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALL
Sbjct: 61  PTQKRKTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALL 120

Query: 121 TACTAELISRSTRKAKPLVHQHSDLSINYGSTTTAAGGSGETKKIKKV 169
           TACTAELISRSTRKAKPLVHQHSDLSINYGSTTTAAGGSGETKKIKKV
Sbjct: 121 TACTAELISRSTRKAKPLVHQHSDLSINYGSTTTAAGGSGETKKIKKV 168

[Close]
BLAST of CSPI01G10390.1 vs. NCBI nr
Match: gi|659067697|ref|XP_008440827.1| (PREDICTED: uncharacterized protein LOC103485133 isoform X1 [Cucumis melo])

HSP 1 Score: 99.0 bits (245), Expect = 8.5e-18
Identity = 73/161 (45.34%), Postives = 93/161 (57.76%), Query Frame = 1 

Query: 7   LAHGIFNPPSSPSKKNTPKFPGRS-SVEPQTPDPVHGKKRPAPVSPNDDFQHDRPPTQKR 66
           L+    N PSSPSK +       +  V P TP+   GKK     S ++  +  R    K 
Sbjct: 197 LSASTVNEPSSPSKLSASNNSDPNIEVGPDTPENSRGKKTSGSNSRDNRSEEKRETKIKA 256

Query: 67  KTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALLTACTA 126
           +TD    GSS  VP+ DLI ++++MV MLK  GR    LV+ PLL CFVSAQ LL AC  
Sbjct: 257 QTDQ-NSGSSLTVPLDDLIARMKEMVNMLKSEGR----LVNSPLLGCFVSAQTLLMACAT 316

Query: 127 ELISRSTRKAKPLVHQHSDLSINYGSTT---TAAGGSGETK 164
           EL+S S  K+K L HQ S++S+NY STT   TAA G+GE K
Sbjct: 317 ELLSISIGKSKALHHQGSEISVNYSSTTTNDTAADGNGEKK 352

[Close]
BLAST of CSPI01G10390.1 vs. NCBI nr
Match: gi|700209404|gb|KGN64500.1| (hypothetical protein Csa_1G060770 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 9.4e-09
Identity = 49/98 (50.00%), Postives = 59/98 (60.20%), Query Frame = 1 

Query: 72  EGSSSD-VPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALLTACTAELISR 131
           EGSSS      DLI K+E+ V+ +K V  +KD LVS PLLACFV+AQ LL  CT +L   
Sbjct: 44  EGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYT 103

Query: 132 STRKAKPLVHQHSDLSINYGSTTT-AAGGSGETKKIKK 168
           ST       HQ S++S+   STT  AA  S E  KIKK
Sbjct: 104 STGD-----HQRSEVSVKDSSTTNEAADRSVEENKIKK 136

The following BLAST results are available for this feature:
BLAST of CSPI01G10390.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G10390.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LX14_CUCSA1.0e-86100.00p55 OS=Cucumis sativus GN=Csa_1G059750 PE=4 SV=1[more]
A0A0A0LRJ2_CUCSA6.6e-0950.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G060770 PE=4 SV=1[more]
BLAST of CSPI01G10390.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G10390.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209400|gb|KGN64496.1|1.5e-86100.00p55 [Cucumis sativus][more]
gi|659067697|ref|XP_008440827.1|8.5e-1845.34PREDICTED: uncharacterized protein LOC103485133 isoform X1 [Cucumis melo][more]
gi|700209404|gb|KGN64500.1|9.4e-0950.00hypothetical protein Csa_1G060770 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI01G10390CSPI01G10390gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI01G10390.1CSPI01G10390.1-proteinpolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI01G10390.1.utr3p1CSPI01G10390.1.utr3p1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI01G10390.1.cds1CSPI01G10390.1.cds1CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI01G10390.1.utr5p1CSPI01G10390.1.utr5p1five_prime_UTR