Bhi06G000742 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi06G000742
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein
Location	chr6 : 22181539 .. 22182938 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGAGAAAATGCCAGAGGGACACACTGCTATCCTCAACTCTGGCACTGTTTTTGGGCAAAATGGTAGTAATTTCAACCAGCTTTCCACTGAGAGCCTTTCAATGAGCATAAACTCTCGTTTGGAGTCTAATGGCATTTCAAAATGTCAAACCTTATCAACTGGAAGCAAAGTACAAAATGAGAAGGCAGAATGGGTTGTACAAGACGAACCAGGTGTGTACATAACTCTATCTGCTTTGCCAGGAGGATGCAATGAGCTGAAACGAGTTCGTTTCAGGTACTAAATTTAGCTCACTTTTTTGTGAAAGTTTATTGACGCTTACATGGCATTAAAATCAATCTTGTTTCATCATCCAACTGTATTCCTTTGTAATGCCTATGTCATCAATCCATATCTTTCTAATGCTGATTGTTGAAATTCCTTACCTCATCGTAATCCCCATAACTTAATACTTAAGTTGACGCCTTATTACCCAATGTACGCTTGTGTTGTCTAATAAAAATATTTTGTTTCCTATCATAAAAGATAAAAATTTGAAGGTTTGTTTGGAAAACTGTTTGAAATATATATATATATGTATGTATGTATGTATATATTAATAGCTTTGTGATAGGAAACCGTTATTGTGTAGGTTAAAGTTACCCACTCCTTGGTTTCTTGTTTACTTCTAAAAAATCTGTTTTTTAAAAAAAATAAATTTCATCGATAATGGTAATACCAGTTAATAGACTCCCAACTTCCCATAGGTATATTGAAACAGTCGATGTAAGTAGAGTATTGAAACTATATTGAAAAGATTACATTTACTCTAAACTTTTTGACCTATCAACTTAAGCTTTTTAGTCTAGTGATATATCGTGTTTACATAGAAATATTCCTTATTCATATTTAGGAGTATCCACGATGGTGAGTGTTGTAAATATATTTGGATGATAATCTAAGATTATCCTAACCTGCTGTTTTAGGTTAGCTTAAGATAAGTTTAATCTTTCCAATATCTTCTCAACAAGTAATGCTTTTTTTTTCTCTCTTTTATTGAACTTGTTCACTGCCTGCTTGGGCTATCAGTACGAAAGTTTGTTACGGTTCAATTTAAAGTCAATAATGTCACTGATTCAGTTGTTTTTTTTCCTTTTCTTTTTTTCCTTCCCCTCTCTCTATTCTATCCACTTAAGTGTAATAGGCACCTATATATACAAAATCAAGCAGCCCTGCTTGCATATTGTTGCTATTATGAAAGACCAACAATCTCATTATGAGTTAACTAGTAAAGCAAAGCATATGTTCTCAGTTTTCCTGTGTTGAAAATTGTGTTGCAGTCGAAGACATTTCACAGAAGCACAAGCAGAGAAATGGTGGGCGGAATTCGGAGCGAAGGTTTGTGAGCGGCATAAA

mRNA sequence

ATGGCTGAGAAAATGCCAGAGGGACACACTGCTATCCTCAACTCTGGCACTGTTTTTGGGCAAAATGGTAGTAATTTCAACCAGCTTTCCACTGAGAGCCTTTCAATGAGCATAAACTCTCGTTTGGAGTCTAATGGCATTTCAAAATGTCAAACCTTATCAACTGGAAGCAAAGTACAAAATGAGAAGGCAGAATGGGTTGTACAAGACGAACCAGGTGTGTACATAACTCTATCTGCTTTGCCAGGAGGATGCAATGAGCTGAAACGAGTTCGTTTCAGTCGAAGACATTTCACAGAAGCACAAGCAGAGAAATGGTGGGCGGAATTCGGAGCGAAGGTTTGTGAGCGGCATAAA

Coding sequence (CDS)

ATGGCTGAGAAAATGCCAGAGGGACACACTGCTATCCTCAACTCTGGCACTGTTTTTGGGCAAAATGGTAGTAATTTCAACCAGCTTTCCACTGAGAGCCTTTCAATGAGCATAAACTCTCGTTTGGAGTCTAATGGCATTTCAAAATGTCAAACCTTATCAACTGGAAGCAAAGTACAAAATGAGAAGGCAGAATGGGTTGTACAAGACGAACCAGGTGTGTACATAACTCTATCTGCTTTGCCAGGAGGATGCAATGAGCTGAAACGAGTTCGTTTCAGTCGAAGACATTTCACAGAAGCACAAGCAGAGAAATGGTGGGCGGAATTCGGAGCGAAGGTTTGTGAGCGGCATAAA

Protein sequence

MAEKMPEGHTAILNSGTVFGQNGSNFNQLSTESLSMSINSRLESNGISKCQTLSTGSKVQNEKAEWVVQDEPGVYITLSALPGGCNELKRVRFSRRHFTEAQAEKWWAEFGAKVCERHK

Homology

[Close]

BLAST of Bhi06G000742 vs. Swiss-Prot
Match: sp|Q6YUB8|BRXL1_ORYSJ (Protein Brevis radix-like 1 OS=Oryza sativa subsp. japonica OX=39947 GN=BRXL1 PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.1e-14
Identity = 38/89 (42.70%), Postives = 55/89 (61.80%), Query Frame = 0


Query: 31  TESLSMSINSRLESNGISKCQTLSTG-SKVQNEKAEWVVQDEPGVYITLSALPGGCNELK 90
           T S+  S+ S      + + + LS   S   +++ EWV +DEPGVYIT+ ALPGG  EL+
Sbjct: 308 TSSMDASMRSSSSPEEVDRSRELSVSVSNASDQEREWVEEDEPGVYITIRALPGGIRELR 367

Query: 91  RVRFSRRHFTEAQAEKWWAEFGAKVCERH 119
           RVRFSR  F+E  A  WW E  A++ +++
Sbjct: 368 RVRFSREKFSEMHARLWWEENRARIHDQY 396

[Close]

BLAST of Bhi06G000742 vs. Swiss-Prot
Match: sp|Q8GZ92|BRXL4_ARATH (Protein Brevis radix-like 4 OS=Arabidopsis thaliana OX=3702 GN=BRXL4 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 7.7e-13
Identity = 43/98 (43.88%), Postives = 58/98 (59.18%), Query Frame = 0


Query: 24  SNFNQLSTESLSMSINSRLESN---GISKCQTLSTGSKVQNEKAEWVVQDEPGVYITLSA 83
           S+ +   TE+ S+  + R  S+     S+  ++S  S V N   EWV QDEPGVYIT+  
Sbjct: 289 SSISVAKTETSSIDASIRSSSSRDADRSEEMSVSNASDVDN---EWVEQDEPGVYITIKV 348

Query: 84  LPGGCNELKRVRFSRRHFTEAQAEKWWAEFGAKVCERH 119
           LPGG  EL+RVRFSR  F E  A  WW E  A++ E++
Sbjct: 349 LPGGKRELRRVRFSRERFGEMHARLWWEENRARIHEQY 383

[Close]

BLAST of Bhi06G000742 vs. Swiss-Prot
Match: sp|Q947D2|PRAF1_ARATH (PH, RCC1 and FYVE domains-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=PRAF1 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-12
Identity = 37/65 (56.92%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 55   TGSKVQNE-KAEWVVQDEPGVYITLSALPGGCNELKRVRFSRRHFTEAQAEKWWAEFGAK 114
            TG    N+ +AEW+ Q EPGVYITL AL  G  +L+RVRFSRR F E QAE WW+E   K
Sbjct: 1013 TGVNNTNQVEAEWIEQYEPGVYITLVALHDGTRDLRRVRFSRRRFGEHQAETWWSENREK 1072

Query: 115  VCERH 119
            V E++
Sbjct: 1073 VYEKY 1077

[Close]

BLAST of Bhi06G000742 vs. Swiss-Prot
Match: sp|Q5HZ09|BRXL3_ARATH (Protein Brevis radix-like 3 OS=Arabidopsis thaliana OX=3702 GN=BRXL3 PE=2 SV=2)

HSP 1 Score: 73.6 bits (179), Expect = 1.7e-12
Identity = 35/88 (39.77%), Postives = 56/88 (63.64%), Query Frame = 0


Query: 31  TESLSMSINSRLESNGISKCQTLSTGSKVQNEKAEWVVQDEPGVYITLSALPGGCNELKR 90
           T++ + SI+    S+ + + + +S  S   + ++EWV QDEPG+YIT+ ALP G  EL+R
Sbjct: 283 TKTETSSIDGSARSSSVDRSEEVSV-SNASDMESEWVEQDEPGIYITIRALPDGNRELRR 342

Query: 91  VRFSRRHFTEAQAEKWWAEFGAKVCERH 119
           VRFSR  F E  A  WW +  A++ +++
Sbjct: 343 VRFSRDKFGETHARLWWEQNRARIQQQY 369

[Close]

BLAST of Bhi06G000742 vs. Swiss-Prot
Match: sp|Q8GYL9|BRXL2_ARATH (Protein Brevis radix-like 2 OS=Arabidopsis thaliana OX=3702 GN=BRXL2 PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 5.5e-11
Identity = 39/99 (39.39%), Postives = 56/99 (56.57%), Query Frame = 0


Query: 22  NGSNFNQLSTESLSMSINSRLESNGISKCQTLSTGSKV----QNEKAEWVVQDEPGVYIT 81
           +GS+  ++  + +   +   L   G  +  +  T S V    ++E  EWV Q EPGV IT
Sbjct: 97  SGSSTPKILGKEMESRLKGFLSGEGTPESMSGRTESTVFMEEEDELKEWVAQVEPGVLIT 156

Query: 82  LSALPGGCNELKRVRFSRRHFTEAQAEKWWAEFGAKVCE 117
             +LP G N++KR+RFSR  F + QA+KWWAE   KV E
Sbjct: 157 FVSLPEGGNDMKRIRFSREMFDKWQAQKWWAENFDKVME 195

[Close]

BLAST of Bhi06G000742 vs. TAIR10
Match: AT1G69710.1 (Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain)

HSP 1 Score: 105.5 bits (262), Expect = 2.3e-23
Identity = 56/92 (60.87%), Postives = 68/92 (73.91%), Query Frame = 0


Query: 27   NQLSTESLSMSINSRLESNGISKCQTLSTGSKVQNEKAEWVVQDEPGVYITLSALPGGCN 86
            NQ    S+ +S +S+ E+N  SK  + + G + QN+K E VVQDEPGVY+TL +LPGG  
Sbjct: 948  NQTHIRSM-VSQDSQNENNLTSK--SFANGHRKQNDKPEKVVQDEPGVYLTLLSLPGGGT 1007

Query: 87   ELKRVRFSRRHFTEAQAEKWWAEFGAKVCERH 119
            ELKRVRFSR+ FTE QAEKWW E GAKVCERH
Sbjct: 1008 ELKRVRFSRKQFTEEQAEKWWGENGAKVCERH 1036

[Close]

BLAST of Bhi06G000742 vs. TAIR10
Match: AT5G19420.2 (Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain)

HSP 1 Score: 85.9 bits (211), Expect = 1.8e-17
Identity = 47/97 (48.45%), Postives = 63/97 (64.95%), Query Frame = 0


Query: 22   NGSNFNQLSTESLSMSINSRLESNGISKCQTLSTGSKVQNEKAEWVVQDEPGVYITLSAL 81
            NG++     + S     N   E+  I++  T S  S+ +NE  EWV QDEPGVYITL+AL
Sbjct: 1026 NGTSTPVFDSGSYRQQANHAAEA--INRISTRSKESEPRNEN-EWVEQDEPGVYITLTAL 1085

Query: 82   PGGCNELKRVRFSRRHFTEAQAEKWWAEFGAKVCERH 119
             GG  +LKRVRFSR+ F+E QAE+WWAE   +V E++
Sbjct: 1086 AGGARDLKRVRFSRKRFSEKQAEEWWAENRGRVYEQY 1119

[Close]

BLAST of Bhi06G000742 vs. TAIR10
Match: AT5G12350.1 (Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain)

HSP 1 Score: 85.1 bits (209), Expect = 3.2e-17
Identity = 52/130 (40.00%), Postives = 72/130 (55.38%), Query Frame = 0


Query: 1    MAEKMPEGHTAILNSGTVFGQNGSNFNQLSTESLSMSINSR-LESNGIS----------- 60
            MAE++P G    + S       GS+  ++   ++    NS+  E NGI+           
Sbjct: 933  MAERLPVGSARTVKSPPSLNSFGSSPGRIDPFNILNQANSQESEPNGITTPMFXXXXXXX 992

Query: 61   KCQTLSTGSKVQNEKAEWVVQDEPGVYITLSALPGGCNELKRVRFSRRHFTEAQAEKWWA 119
                       +NEK EWV QDEPGVYITL+AL GG  +LKRVRFSR+ F+E QAE+WWA
Sbjct: 993  XXXXXXXXXXARNEK-EWVEQDEPGVYITLTALAGGARDLKRVRFSRKRFSEIQAEQWWA 1052

[Close]

BLAST of Bhi06G000742 vs. TAIR10
Match: AT5G20540.1 (BREVIS RADIX-like 4)

HSP 1 Score: 74.7 bits (182), Expect = 4.3e-14
Identity = 43/98 (43.88%), Postives = 58/98 (59.18%), Query Frame = 0


Query: 24  SNFNQLSTESLSMSINSRLESN---GISKCQTLSTGSKVQNEKAEWVVQDEPGVYITLSA 83
           S+ +   TE+ S+  + R  S+     S+  ++S  S V N   EWV QDEPGVYIT+  
Sbjct: 289 SSISVAKTETSSIDASIRSSSSRDADRSEEMSVSNASDVDN---EWVEQDEPGVYITIKV 348

Query: 84  LPGGCNELKRVRFSRRHFTEAQAEKWWAEFGAKVCERH 119
           LPGG  EL+RVRFSR  F E  A  WW E  A++ E++
Sbjct: 349 LPGGKRELRRVRFSRERFGEMHARLWWEENRARIHEQY 383

[Close]

BLAST of Bhi06G000742 vs. TAIR10
Match: AT5G42140.1 (Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain)

HSP 1 Score: 74.3 bits (181), Expect = 5.6e-14
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 0


Query: 63   KAEWVVQDEPGVYITLSALPGGCNELKRVRFSRRHFTEAQAEKWWAEFGAKVCERH 119
            +AEW+ Q EPGVYITL AL  G  +LKRVRFSRR F E QAE WW+E   +V E++
Sbjct: 998  EAEWIEQYEPGVYITLLALGDGTRDLKRVRFSRRRFREQQAETWWSENRERVYEKY 1053

[Close]

BLAST of Bhi06G000742 vs. TrEMBL
Match: tr|A0A1S4DUS6|A0A1S4DUS6_CUCME (X-linked retinitis pigmentosa GTPase regulator-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC103485768 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 7.4e-53
Identity = 108/119 (90.76%), Postives = 109/119 (91.60%), Query Frame = 0


Query: 1   MAEKMPEGHTAILNSGTVFGQNGSNFNQLSTESLSMSINSRLESNGISKCQTLSTGSKVQ 60
           MAEKMPE  TAI+NS TV GQNGSN NQLSTESLSMSINSRLESNGISK QTLSTG K  
Sbjct: 715 MAEKMPEAQTAIVNSSTVSGQNGSNLNQLSTESLSMSINSRLESNGISKSQTLSTGIKTV 774

Query: 61  NEKAEWVVQDEPGVYITLSALPGGCNELKRVRFSRRHFTEAQAEKWWAEFGAKVCERHK 120
           NEKAEWVVQDEPGVYITLSALPGG NELKRVRFSRRHFTEAQAEKWWAEFGAKVCERHK
Sbjct: 775 NEKAEWVVQDEPGVYITLSALPGGFNELKRVRFSRRHFTEAQAEKWWAEFGAKVCERHK 833

[Close]

BLAST of Bhi06G000742 vs. TrEMBL
Match: tr|A0A1S3B4R6|A0A1S3B4R6_CUCME (X-linked retinitis pigmentosa GTPase regulator-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485768 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 7.4e-53
Identity = 108/119 (90.76%), Postives = 109/119 (91.60%), Query Frame = 0


Query: 1   MAEKMPEGHTAILNSGTVFGQNGSNFNQLSTESLSMSINSRLESNGISKCQTLSTGSKVQ 60
           MAEKMPE  TAI+NS TV GQNGSN NQLSTESLSMSINSRLESNGISK QTLSTG K  
Sbjct: 859 MAEKMPEAQTAIVNSSTVSGQNGSNLNQLSTESLSMSINSRLESNGISKSQTLSTGIKTV 918

Query: 61  NEKAEWVVQDEPGVYITLSALPGGCNELKRVRFSRRHFTEAQAEKWWAEFGAKVCERHK 120
           NEKAEWVVQDEPGVYITLSALPGG NELKRVRFSRRHFTEAQAEKWWAEFGAKVCERHK
Sbjct: 919 NEKAEWVVQDEPGVYITLSALPGGFNELKRVRFSRRHFTEAQAEKWWAEFGAKVCERHK 977

[Close]

BLAST of Bhi06G000742 vs. TrEMBL
Match: tr|A0A1S3B416|A0A1S3B416_CUCME (X-linked retinitis pigmentosa GTPase regulator-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103485768 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 7.4e-53
Identity = 108/119 (90.76%), Postives = 109/119 (91.60%), Query Frame = 0


Query: 1   MAEKMPEGHTAILNSGTVFGQNGSNFNQLSTESLSMSINSRLESNGISKCQTLSTGSKVQ 60
           MAEKMPE  TAI+NS TV GQNGSN NQLSTESLSMSINSRLESNGISK QTLSTG K  
Sbjct: 717 MAEKMPEAQTAIVNSSTVSGQNGSNLNQLSTESLSMSINSRLESNGISKSQTLSTGIKTV 776

Query: 61  NEKAEWVVQDEPGVYITLSALPGGCNELKRVRFSRRHFTEAQAEKWWAEFGAKVCERHK 120
           NEKAEWVVQDEPGVYITLSALPGG NELKRVRFSRRHFTEAQAEKWWAEFGAKVCERHK
Sbjct: 777 NEKAEWVVQDEPGVYITLSALPGGFNELKRVRFSRRHFTEAQAEKWWAEFGAKVCERHK 835

[Close]

BLAST of Bhi06G000742 vs. TrEMBL
Match: tr|A0A0A0LN51|A0A0A0LN51_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G110220 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.6e-52
Identity = 107/119 (89.92%), Postives = 109/119 (91.60%), Query Frame = 0


Query: 1   MAEKMPEGHTAILNSGTVFGQNGSNFNQLSTESLSMSINSRLESNGISKCQTLSTGSKVQ 60
           MAEKMPEG TAI+NS TV GQNGSN NQLSTESLSMSINSRLESNGISK QTLSTG K  
Sbjct: 56  MAEKMPEGQTAIVNSSTVTGQNGSNLNQLSTESLSMSINSRLESNGISKGQTLSTGIKAL 115

Query: 61  NEKAEWVVQDEPGVYITLSALPGGCNELKRVRFSRRHFTEAQAEKWWAEFGAKVCERHK 120
           NEKAEWVVQDEPGVYITLS LPGG NELKRVRFSRRHFTEAQAEKWWA+FGAKVCERHK
Sbjct: 116 NEKAEWVVQDEPGVYITLSTLPGGFNELKRVRFSRRHFTEAQAEKWWADFGAKVCERHK 174

[Close]

BLAST of Bhi06G000742 vs. TrEMBL
Match: tr|W9QMX2|W9QMX2_9ROSA (Putative E3 ubiquitin-protein ligase HERC1 OS=Morus notabilis OX=981085 GN=L484_006532 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.5e-29
Identity = 72/120 (60.00%), Postives = 88/120 (73.33%), Query Frame = 0


Query: 1    MAEKMPEGHTAILNSGTVFGQNGSNFNQLSTESLSMSINS-RLESNGISKCQTLSTGSKV 60
            MAE++PEGHT   ++     ++ +  NQ+S E+   ++N+   ESNG S  Q LS GSK 
Sbjct: 894  MAERLPEGHTISCSTVPTAARDTNFSNQISYETTLTNMNTPERESNGNSVNQILSNGSKA 953

Query: 61   QNE-KAEWVVQDEPGVYITLSALPGGCNELKRVRFSRRHFTEAQAEKWWAEFGAKVCERH 119
            Q   K EWV+QDEPGVYITLS+LPGG NELKRVRFSR+HFTE QAE+WWAE GAK CERH
Sbjct: 954  QQTGKTEWVMQDEPGVYITLSSLPGGGNELKRVRFSRKHFTEEQAERWWAENGAKTCERH 1013

[Close]

BLAST of Bhi06G000742 vs. NCBI nr
Match: XP_008441692.1 (PREDICTED: X-linked retinitis pigmentosa GTPase regulator-like isoform X1 [Cucumis melo])

HSP 1 Score: 215.3 bits (547), Expect = 1.1e-52
Identity = 108/119 (90.76%), Postives = 109/119 (91.60%), Query Frame = 0


Query: 1   MAEKMPEGHTAILNSGTVFGQNGSNFNQLSTESLSMSINSRLESNGISKCQTLSTGSKVQ 60
           MAEKMPE  TAI+NS TV GQNGSN NQLSTESLSMSINSRLESNGISK QTLSTG K  
Sbjct: 859 MAEKMPEAQTAIVNSSTVSGQNGSNLNQLSTESLSMSINSRLESNGISKSQTLSTGIKTV 918

Query: 61  NEKAEWVVQDEPGVYITLSALPGGCNELKRVRFSRRHFTEAQAEKWWAEFGAKVCERHK 120
           NEKAEWVVQDEPGVYITLSALPGG NELKRVRFSRRHFTEAQAEKWWAEFGAKVCERHK
Sbjct: 919 NEKAEWVVQDEPGVYITLSALPGGFNELKRVRFSRRHFTEAQAEKWWAEFGAKVCERHK 977

[Close]

BLAST of Bhi06G000742 vs. NCBI nr
Match: XP_008441694.1 (PREDICTED: X-linked retinitis pigmentosa GTPase regulator-like isoform X3 [Cucumis melo])

HSP 1 Score: 215.3 bits (547), Expect = 1.1e-52
Identity = 108/119 (90.76%), Postives = 109/119 (91.60%), Query Frame = 0


Query: 1   MAEKMPEGHTAILNSGTVFGQNGSNFNQLSTESLSMSINSRLESNGISKCQTLSTGSKVQ 60
           MAEKMPE  TAI+NS TV GQNGSN NQLSTESLSMSINSRLESNGISK QTLSTG K  
Sbjct: 717 MAEKMPEAQTAIVNSSTVSGQNGSNLNQLSTESLSMSINSRLESNGISKSQTLSTGIKTV 776

Query: 61  NEKAEWVVQDEPGVYITLSALPGGCNELKRVRFSRRHFTEAQAEKWWAEFGAKVCERHK 120
           NEKAEWVVQDEPGVYITLSALPGG NELKRVRFSRRHFTEAQAEKWWAEFGAKVCERHK
Sbjct: 777 NEKAEWVVQDEPGVYITLSALPGGFNELKRVRFSRRHFTEAQAEKWWAEFGAKVCERHK 835

[Close]

BLAST of Bhi06G000742 vs. NCBI nr
Match: XP_016899470.1 (PREDICTED: X-linked retinitis pigmentosa GTPase regulator-like isoform X4 [Cucumis melo])

HSP 1 Score: 215.3 bits (547), Expect = 1.1e-52
Identity = 108/119 (90.76%), Postives = 109/119 (91.60%), Query Frame = 0


Query: 1   MAEKMPEGHTAILNSGTVFGQNGSNFNQLSTESLSMSINSRLESNGISKCQTLSTGSKVQ 60
           MAEKMPE  TAI+NS TV GQNGSN NQLSTESLSMSINSRLESNGISK QTLSTG K  
Sbjct: 715 MAEKMPEAQTAIVNSSTVSGQNGSNLNQLSTESLSMSINSRLESNGISKSQTLSTGIKTV 774

Query: 61  NEKAEWVVQDEPGVYITLSALPGGCNELKRVRFSRRHFTEAQAEKWWAEFGAKVCERHK 120
           NEKAEWVVQDEPGVYITLSALPGG NELKRVRFSRRHFTEAQAEKWWAEFGAKVCERHK
Sbjct: 775 NEKAEWVVQDEPGVYITLSALPGGFNELKRVRFSRRHFTEAQAEKWWAEFGAKVCERHK 833

[Close]

BLAST of Bhi06G000742 vs. NCBI nr
Match: KGN61396.1 (hypothetical protein Csa_2G110220 [Cucumis sativus])

HSP 1 Score: 214.2 bits (544), Expect = 2.5e-52
Identity = 107/119 (89.92%), Postives = 109/119 (91.60%), Query Frame = 0


Query: 1   MAEKMPEGHTAILNSGTVFGQNGSNFNQLSTESLSMSINSRLESNGISKCQTLSTGSKVQ 60
           MAEKMPEG TAI+NS TV GQNGSN NQLSTESLSMSINSRLESNGISK QTLSTG K  
Sbjct: 56  MAEKMPEGQTAIVNSSTVTGQNGSNLNQLSTESLSMSINSRLESNGISKGQTLSTGIKAL 115

Query: 61  NEKAEWVVQDEPGVYITLSALPGGCNELKRVRFSRRHFTEAQAEKWWAEFGAKVCERHK 120
           NEKAEWVVQDEPGVYITLS LPGG NELKRVRFSRRHFTEAQAEKWWA+FGAKVCERHK
Sbjct: 116 NEKAEWVVQDEPGVYITLSTLPGGFNELKRVRFSRRHFTEAQAEKWWADFGAKVCERHK 174

[Close]

BLAST of Bhi06G000742 vs. NCBI nr
Match: XP_022156646.1 (E3 ubiquitin-protein ligase HERC2-like isoform X3 [Momordica charantia])

HSP 1 Score: 207.2 bits (526), Expect = 3.0e-50
Identity = 103/118 (87.29%), Postives = 109/118 (92.37%), Query Frame = 0


Query: 1   MAEKMPEGHTAILNSGTVFGQNGSNFNQLSTESLSMSINSRLESNGISKCQTLSTGSKVQ 60
           MAEKMPEG++AI +SGTV GQN SN NQLS ESLSMSINSRLESNGISK QT+STG+K Q
Sbjct: 718 MAEKMPEGYSAISHSGTVSGQNVSNSNQLSAESLSMSINSRLESNGISKSQTISTGTKGQ 777

Query: 61  NEKAEWVVQDEPGVYITLSALPGGCNELKRVRFSRRHFTEAQAEKWWAEFGAKVCERH 119
           NEKAEWVVQDEPGVYITL+ALPGG NELKRVRFSRRHFTEAQAEKWWAEFG KVCERH
Sbjct: 778 NEKAEWVVQDEPGVYITLAALPGGGNELKRVRFSRRHFTEAQAEKWWAEFGTKVCERH 835

The following BLAST results are available for this feature:

BLAST of Bhi06G000742 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6YUB8\|BRXL1_ORYSJ	3.1e-14	42.70	Protein Brevis radix-like 1 OS=Oryza sativa subsp. japonica OX=39947 GN=BRXL1 PE...	[more]
sp\|Q8GZ92\|BRXL4_ARATH	7.7e-13	43.88	Protein Brevis radix-like 4 OS=Arabidopsis thaliana OX=3702 GN=BRXL4 PE=2 SV=1	[more]
sp\|Q947D2\|PRAF1_ARATH	1.3e-12	56.92	PH, RCC1 and FYVE domains-containing protein 1 OS=Arabidopsis thaliana OX=3702 G...	[more]
sp\|Q5HZ09\|BRXL3_ARATH	1.7e-12	39.77	Protein Brevis radix-like 3 OS=Arabidopsis thaliana OX=3702 GN=BRXL3 PE=2 SV=2	[more]
sp\|Q8GYL9\|BRXL2_ARATH	5.5e-11	39.39	Protein Brevis radix-like 2 OS=Arabidopsis thaliana OX=3702 GN=BRXL2 PE=2 SV=1	[more]

BLAST of Bhi06G000742 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G69710.1	2.3e-23	60.87	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain	[more]
AT5G19420.2	1.8e-17	48.45	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain	[more]
AT5G12350.1	3.2e-17	40.00	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain	[more]
AT5G20540.1	4.3e-14	43.88	BREVIS RADIX-like 4	[more]
AT5G42140.1	5.6e-14	60.71	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain	[more]

BLAST of Bhi06G000742 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DUS6\|A0A1S4DUS6_CUCME	7.4e-53	90.76	X-linked retinitis pigmentosa GTPase regulator-like isoform X4 OS=Cucumis melo O...	[more]
tr\|A0A1S3B4R6\|A0A1S3B4R6_CUCME	7.4e-53	90.76	X-linked retinitis pigmentosa GTPase regulator-like isoform X1 OS=Cucumis melo O...	[more]
tr\|A0A1S3B416\|A0A1S3B416_CUCME	7.4e-53	90.76	X-linked retinitis pigmentosa GTPase regulator-like isoform X3 OS=Cucumis melo O...	[more]
tr\|A0A0A0LN51\|A0A0A0LN51_CUCSA	1.6e-52	89.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G110220 PE=4 SV=1	[more]
tr\|W9QMX2\|W9QMX2_9ROSA	1.5e-29	60.00	Putative E3 ubiquitin-protein ligase HERC1 OS=Morus notabilis OX=981085 GN=L484_...	[more]

BLAST of Bhi06G000742 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441692.1	1.1e-52	90.76	PREDICTED: X-linked retinitis pigmentosa GTPase regulator-like isoform X1 [Cucum...	[more]
XP_008441694.1	1.1e-52	90.76	PREDICTED: X-linked retinitis pigmentosa GTPase regulator-like isoform X3 [Cucum...	[more]
XP_016899470.1	1.1e-52	90.76	PREDICTED: X-linked retinitis pigmentosa GTPase regulator-like isoform X4 [Cucum...	[more]
KGN61396.1	2.5e-52	89.92	hypothetical protein Csa_2G110220 [Cucumis sativus]	[more]
XP_022156646.1	3.0e-50	87.29	E3 ubiquitin-protein ligase HERC2-like isoform X3 [Momordica charantia]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013591	Brevis_radix_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi06M000742	Bhi06M000742	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013591	Brevis radix (BRX) domain	PFAM	PF08381	BRX	coord: 63..118 e-value: 1.9E-26 score: 91.1
IPR013591	Brevis radix (BRX) domain	PROSITE	PS51514	BRX	coord: 64..119 score: 28.454
None	No IPR available	PANTHER	PTHR22870:SF183	REGULATOR OF CHROMOSOME CONDENSATION AND FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN	coord: 39..118
None	No IPR available	PANTHER	PTHR22870	REGULATOR OF CHROMOSOME CONDENSATION	coord: 39..118

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi06G000742	Csa2G110220	Cucumber (Chinese Long) v2	cuwgoB140
Bhi06G000742	MELO3C008528	Melon (DHL92) v3.5.1	mewgoB455
Bhi06G000742	CSPI02G08440	Wild cucumber (PI 183967)	cpiwgoB140
Bhi06G000742	CsGy2G008750	Cucumber (Gy14) v2	cgybwgoB134
Bhi06G000742	Cla003364	Watermelon (97103) v1	wgowmB151

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi06G000742	Cucumber (Gy14) v1	cgywgoB544
Bhi06G000742	Cucurbita maxima (Rimu)	cmawgoB0191
Bhi06G000742	Cucurbita maxima (Rimu)	cmawgoB0919
Bhi06G000742	Cucurbita maxima (Rimu)	cmawgoB0931
Bhi06G000742	Cucurbita moschata (Rifu)	cmowgoB0173
Bhi06G000742	Cucurbita moschata (Rifu)	cmowgoB0930
Bhi06G000742	Cucurbita pepo (Zucchini)	cpewgoB0117
Bhi06G000742	Cucurbita pepo (Zucchini)	cpewgoB1009
Bhi06G000742	Cucumber (Chinese Long) v3	cucwgoB147
Bhi06G000742	Melon (DHL92) v3.6.1	medwgoB458