CSPI02G08440 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G08440
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain
Location	Chr2 : 7938898 .. 7941926 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACCGTCACCTTCAAATCATCATCAGAATTTCGGATAATAGCCCTTGGACCCAGTGGATGGAGGAACAGAGTTCCAAGCCACATCAACATTCAACTTTAAGAAGCAGACGAATGGACTGCATTTCTTTGAGGAGGTACCAGACAAACGAGGACCCACTTCCCACTTTTGGATCAAAGTAAGGAGTTCAAGTTTCTAAAATACTTTAGGACCCATTTGCTATTTACGATATGATCTGGAGTTAGATTATTCAATCAATAACTATTCCTATTCGATCAGATTGCCCAACATAAAATAGCAATAATGCCCAACTCATTTTTTGAATGGATTGAATTTAGAGCCATCCATCAAGGGGTTTATAGAGATCAGGTGCAGACCAGCTTTGCATGGGTACACCAAGCACATTTAAGACTTCTTAACTTCCTAATAAAGTTGACACTTTACCATTTTTCATTAACTCTCACGTCTCACCAAGTGGACAGGAAGCCATAAAGGATGGATGGGTCAGCCACATATTCTTAAAGAAGTAATTGATGAATGAAAACCAAGTTTCATGCAGTAAATTTGGAAGTAGAAAAAGAATTATATTCCTTCACTAATAAAAGTAATACACTATGTCTTATCATGTTAAATTTTATTAGGGTATAGTTGATATTAGCTTCAAAGTTTACCAGTAGATGGTTATAAAGAATGGGGGAAGGAAGCAATTGTTTAGTTGTTTAGGCTTAAGTTTACTCAAGAGAGGGTCAAAATTACTTGGAATATTTTACTGTCAGTTTCTTCATCTAAATACTAGTTCTTTTTAAATCTTTCGTTCTCATCTCAATTACAAGAAAGAAAAGACTAAATACATATTTCCAAAGACCATCTGGAGGGTAGTCATATGTTGAAGATCCATAAGTTCACTTTTACCATTAAATCTACAGATTCATTAATGTCATCATATGAGTGTTAATTTGAAGAATTTATCAGTCTTTAATATTTTAGTTAATATTTATGCATGACTTCTATTCTCTCCCTTAATTGTTTTGCAGTTAAAAGAGATGGCTGAGAAAATGCCAGAGGGACAAACTGCTATTGTTAACTCTAGCACTGTTACTGGGCAAAATGGTAGTAATTTGAACCAGCTTTCCACCGAGAGCCTTTCAATGAGCATAAACTCTCGTTTGGAGTCGAATGGCATTTCAAAAGGTCAAACCTTATCAACTGGAATCAAAGCACTAAATGAGAAGGCAGAATGGGTTGTACAAGACGAACCAGGCGTGTACATAACTTTGTCCACTTTGCCTGGAGGATTCAATGAGCTGAAACGAGTTCGTTTCAGGTACTAAATTTAGGCCATTTTTTGCGAAAATTTATTGAGTGCTTACATGACATTAAATTTTACTTGTTTCATCCTCCCACTGTATAGTATGATGGCTTTATCATTAATCCATATCTTTCTAGTGCTGATTGTTGGAATTCTTACCTCATCGTAATCCCCTTAACTTGATACTTTAGTTGACACCTTATGCTATAGGCTTTTGATAAAATGTAAGGTTTGCTTGGCAACTGTTTGTAATGTATTCACATATAATTGGCTTTGTGATAGGAGACCGTTATTGTGTAGGTTAAAGTTATACCCTCTCCTTGATTTCATGTTTACTTCTGAAAAGTATTTTTAGAAGAAAAATAAATTTAATTTACAATGGTAATAAGGGGTGTTTACATACTCCCAACTAGGTGTACTAAAAGATCGGTGTTTTGATTGCGTTATGAAAGATTGTTGTCAAGGATTTAATGAAAAAATCTAAATTCACTTTAGCTTAATAGTTTTAACTTTAGAGTTTAATAGCGATCTATAATATAATTCAGTTCAAATCTAGTCTCATTTCAATTTAGAGTATTGAAAATATATTCAAAAGATTAAATTTACTCTAAACTATTCGACCTATTAGGCTTTTTAGTCCAGTGACATATTATGTTATTATAGAAATATTTCTTCATTTAAGAGTATATCCGAAGGTGAGAAAACTAAGTTTATACTAACCTGCTGTTTTAGATTAACATAAGATTTCAAATATCTTCTTAACACATGTTATTTTTTTCTTTTCTTGAACTTGTTCACAGACCTGTTTGGCCTGTCAGTATGAAAGTTCGTTAGGTTCAATTTAAAGTCGATAGTGTCACTGATTTAAAATCATTTTTTTAGTGGCCAATAGGCTCTCCCCCTCCCACCCTCTCTTATCAACTTAAAATTTGTCTAGCTAAAGGCACCTATATATACAAAATTAATCAGCCCTGATTGTGATTACATATATTCAAAAGTGGTATTGTTGCTATTTTATGCTACCAACAATTTCATTTATGAGTTAGCCAGCAAAGAAAAGCGTATTCTTAGTTTCCCTGTATTTCATTGTGTTGCAGTCGAAGACATTTTACAGAAGCACAAGCAGAGAAATGGTGGGCGGATTTCGGAGCCAAGGTATGCGAGCGGCACAAAGTAAAGAGTACTGATTAACAAGTTTTCCATGCATGGATTGGATTCACCAGAGAAAACAAGTCAATGAGAAAGCACTTCTAGTGACCATCTTTCTCTTCTCTGGACTGACGTTCTCCCCTTAAATCTTTCCATTGGTCTTGACTTGGGGGATTGATCAGGGCAATCCAACATTTAGGTTCATATATTAGACAATTAAAAATGTAGCCCAGGAATTAGAAAGAATTACAGAGCTTCAAACCTTCAACTCTCCCCTTTAGAATGCCAGTGTCTTAATTACACTTTTTGTGCTCACCTTTCTCTCTTTACTTCGTGTTTTCCCTTCAACTTGGGGAAAGTCCATATTGTAATTAGCTTAGCAGGTATCAATCAGAAATAGTCTGTTGCTTTTTGCCATAACATTGGATATTTTCTACTGGAAATTTGACGGGGAAAAGCCACCAGCTGTTTATTTATTTTTCATATCATTAATTAGAAAAATCTTGAGTCATAGAACCCCAAGAACATGGTAAGATTAAAGCCTAAGTCCCACGTAACATCTTAGTGGCC

mRNA sequence

ATGAACCGTCACCTTCAAATCATCATCAGAATTTCGGATAATAGCCCTTGGACCCAGTGGATGGAGGAACAGAGTTCCAAGCCACATCAACATTCAACTTTAAGAAGCAGACGAATGGACTGCATTTCTTTGAGGAGGTACCAGACAAACGAGGACCCACTTCCCACTTTTGGATCAAAAGCCATCCATCAAGGGGTTTATAGAGATCAGGTGCAGACCAGCTTTGCATGGTTAAAAGAGATGGCTGAGAAAATGCCAGAGGGACAAACTGCTATTGTTAACTCTAGCACTGTTACTGGGCAAAATGGTAGTAATTTGAACCAGCTTTCCACCGAGAGCCTTTCAATGAGCATAAACTCTCGTTTGGAGTCGAATGGCATTTCAAAAGGTCAAACCTTATCAACTGGAATCAAAGCACTAAATGAGAAGGCAGAATGGGTTGTACAAGACGAACCAGGCGTGTACATAACTTTGTCCACTTTGCCTGGAGGATTCAATGAGCTGAAACGAGTTCGTTTCAGTCGAAGACATTTTACAGAAGCACAAGCAGAGAAATGGTGGGCGGATTTCGGAGCCAAGGTATGCGAGCGGCACAAAGTAAAGAGTACTGATTAA

Coding sequence (CDS)

ATGAACCGTCACCTTCAAATCATCATCAGAATTTCGGATAATAGCCCTTGGACCCAGTGGATGGAGGAACAGAGTTCCAAGCCACATCAACATTCAACTTTAAGAAGCAGACGAATGGACTGCATTTCTTTGAGGAGGTACCAGACAAACGAGGACCCACTTCCCACTTTTGGATCAAAAGCCATCCATCAAGGGGTTTATAGAGATCAGGTGCAGACCAGCTTTGCATGGTTAAAAGAGATGGCTGAGAAAATGCCAGAGGGACAAACTGCTATTGTTAACTCTAGCACTGTTACTGGGCAAAATGGTAGTAATTTGAACCAGCTTTCCACCGAGAGCCTTTCAATGAGCATAAACTCTCGTTTGGAGTCGAATGGCATTTCAAAAGGTCAAACCTTATCAACTGGAATCAAAGCACTAAATGAGAAGGCAGAATGGGTTGTACAAGACGAACCAGGCGTGTACATAACTTTGTCCACTTTGCCTGGAGGATTCAATGAGCTGAAACGAGTTCGTTTCAGTCGAAGACATTTTACAGAAGCACAAGCAGAGAAATGGTGGGCGGATTTCGGAGCCAAGGTATGCGAGCGGCACAAAGTAAAGAGTACTGATTAA

Homology

[Close]

BLAST of CSPI02G08440 vs. Swiss-Prot
Match: BRXL1_ORYSJ (Protein Brevis radix-like 1 OS=Oryza sativa subsp. japonica GN=BRXL1 PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.2e-13
Identity = 39/98 (39.80%), Postives = 62/98 (63.27%), Query Frame = 1


Query: 104 SNLNQLSTESLSMSINSRLESNG--ISKGQTLSTGIK-ALNEKAEWVVQDEPGVYITLST 163
           S+++   TE+ SM  + R  S+   + + + LS  +  A +++ EWV +DEPGVYIT+  
Sbjct: 299 SSISGAKTETSSMDASMRSSSSPEEVDRSRELSVSVSNASDQEREWVEEDEPGVYITIRA 358

Query: 164 LPGGFNELKRVRFSRRHFTEAQAEKWWADFGAKVCERH 199
           LPGG  EL+RVRFSR  F+E  A  WW +  A++ +++
Sbjct: 359 LPGGIRELRRVRFSREKFSEMHARLWWEENRARIHDQY 396

[Close]

BLAST of CSPI02G08440 vs. Swiss-Prot
Match: BRXL4_ARATH (Protein Brevis radix-like 4 OS=Arabidopsis thaliana GN=BRXL4 PE=2 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.0e-12
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 1


Query: 142 EKAEWVVQDEPGVYITLSTLPGGFNELKRVRFSRRHFTEAQAEKWWADFGAKVCERHKVK 201
           E  EWV Q EPGV IT  +LPGG N+LKR+RFSR  F + QA++WWAD   KV E + V+
Sbjct: 148 EPKEWVAQVEPGVLITFVSLPGGGNDLKRIRFSRDMFNKLQAQRWWADNYDKVMELYNVQ 207

[Close]

BLAST of CSPI02G08440 vs. Swiss-Prot
Match: BRXL3_ARATH (Protein Brevis radix-like 3 OS=Arabidopsis thaliana GN=BRXL3 PE=2 SV=2)

HSP 1 Score: 71.2 bits (173), Expect = 1.4e-11
Identity = 34/88 (38.64%), Postives = 54/88 (61.36%), Query Frame = 1


Query: 111 TESLSMSINSRLESNGISKGQTLSTGIKALNEKAEWVVQDEPGVYITLSTLPGGFNELKR 170
           T++ + SI+    S+ + + + +S    A + ++EWV QDEPG+YIT+  LP G  EL+R
Sbjct: 283 TKTETSSIDGSARSSSVDRSEEVSVS-NASDMESEWVEQDEPGIYITIRALPDGNRELRR 342

Query: 171 VRFSRRHFTEAQAEKWWADFGAKVCERH 199
           VRFSR  F E  A  WW    A++ +++
Sbjct: 343 VRFSRDKFGETHARLWWEQNRARIQQQY 369

[Close]

BLAST of CSPI02G08440 vs. Swiss-Prot
Match: BRXL2_ARATH (Protein Brevis radix-like 2 OS=Arabidopsis thaliana GN=BRXL2 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.2e-10
Identity = 40/104 (38.46%), Postives = 61/104 (58.65%), Query Frame = 1


Query: 102 NGSNLNQLSTESLSMSINSRLESNGISK---GQTLSTG-IKALNEKAEWVVQDEPGVYIT 161
           +GS+  ++  + +   +   L   G  +   G+T ST  ++  +E  EWV Q EPGV IT
Sbjct: 97  SGSSTPKILGKEMESRLKGFLSGEGTPESMSGRTESTVFMEEEDELKEWVAQVEPGVLIT 156

Query: 162 LSTLPGGFNELKRVRFSRRHFTEAQAEKWWADFGAKVCERHKVK 202
             +LP G N++KR+RFSR  F + QA+KWWA+   KV E + V+
Sbjct: 157 FVSLPEGGNDMKRIRFSREMFDKWQAQKWWAENFDKVMELYNVQ 200

[Close]

BLAST of CSPI02G08440 vs. Swiss-Prot
Match: BRX_ARATH (Protein BREVIS RADIX OS=Arabidopsis thaliana GN=BRX PE=1 SV=2)

HSP 1 Score: 68.2 bits (165), Expect = 1.2e-10
Identity = 28/57 (49.12%), Postives = 41/57 (71.93%), Query Frame = 1


Query: 145 EWVVQDEPGVYITLSTLPGGFNELKRVRFSRRHFTEAQAEKWWADFGAKVCERHKVK 202
           EW+ Q EPGV+IT ++LP G N+LKR+RFSR  F + QA++WW +   K+ E + V+
Sbjct: 140 EWMAQVEPGVHITFASLPTGGNDLKRIRFSREMFDKWQAQRWWGENYDKIVELYNVQ 196

[Close]

BLAST of CSPI02G08440 vs. TrEMBL
Match: A0A0A0LN51_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G110220 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 6.0e-65
Identity = 128/137 (93.43%), Postives = 133/137 (97.08%), Query Frame = 1


Query: 68  RDQVQTSFAWLKEMAEKMPEGQTAIVNSSTVTGQNGSNLNQLSTESLSMSINSRLESNGI 127
           ++ +++  A LKEMAEKMPEGQTAIVNSSTVTGQNGSNLNQLSTESLSMSINSRLESNGI
Sbjct: 43  KEVIKSLAAQLKEMAEKMPEGQTAIVNSSTVTGQNGSNLNQLSTESLSMSINSRLESNGI 102

Query: 128 SKGQTLSTGIKALNEKAEWVVQDEPGVYITLSTLPGGFNELKRVRFSRRHFTEAQAEKWW 187
           SKGQTLSTGIKALNEKAEWVVQDEPGVYITLSTLPGGFNELKRVRFSRRHFTEAQAEKWW
Sbjct: 103 SKGQTLSTGIKALNEKAEWVVQDEPGVYITLSTLPGGFNELKRVRFSRRHFTEAQAEKWW 162

Query: 188 ADFGAKVCERHKVKSTD 205
           ADFGAKVCERHKVKSTD
Sbjct: 163 ADFGAKVCERHKVKSTD 179

[Close]

BLAST of CSPI02G08440 vs. TrEMBL
Match: W9QMX2_9ROSA (Putative E3 ubiquitin-protein ligase HERC1 OS=Morus notabilis GN=L484_006532 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 5.7e-31
Identity = 75/137 (54.74%), Postives = 98/137 (71.53%), Query Frame = 1


Query: 68   RDQVQTSFAWLKEMAEKMPEGQTAIVNSSTVTGQNGSNLNQLSTESLSMSINS-RLESNG 127
            ++ +++  A LKEMAE++PEG T   ++     ++ +  NQ+S E+   ++N+   ESNG
Sbjct: 881  KEVIKSLTAQLKEMAERLPEGHTISCSTVPTAARDTNFSNQISYETTLTNMNTPERESNG 940

Query: 128  ISKGQTLSTGIKALNE-KAEWVVQDEPGVYITLSTLPGGFNELKRVRFSRRHFTEAQAEK 187
             S  Q LS G KA    K EWV+QDEPGVYITLS+LPGG NELKRVRFSR+HFTE QAE+
Sbjct: 941  NSVNQILSNGSKAQQTGKTEWVMQDEPGVYITLSSLPGGGNELKRVRFSRKHFTEEQAER 1000

Query: 188  WWADFGAKVCERHKVKS 203
            WWA+ GAK CERH V+S
Sbjct: 1001 WWAENGAKTCERHNVRS 1017

[Close]

BLAST of CSPI02G08440 vs. TrEMBL
Match: M5XJC8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020628mg PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.4e-29
Identity = 71/137 (51.82%), Postives = 95/137 (69.34%), Query Frame = 1


Query: 68   RDQVQTSFAWLKEMAEKMPEGQTAIVNSSTVTGQNGSNLNQLSTESLSMSINSRLESNGI 127
            ++ +++  A LK+MAE+MPEGQ    NS ++ G   +  +QLS +S   +I +   SNG 
Sbjct: 895  KEVIKSLTAQLKDMAERMPEGQIGSCNSGSMAGHAINFADQLSKDSHLTNITTPDLSNGN 954

Query: 128  SKGQTLSTGIKALNEKAEWVVQDEPGVYITLSTLPGGFNELKRVRFSRRHFTEAQAEKWW 187
            S  + L+ G K    KAE V+QDEPGVYITL +LP G NEL+RVRFSRRHFTE  AE+WW
Sbjct: 955  SMDRILANGTKGQTGKAERVLQDEPGVYITLCSLPDGGNELRRVRFSRRHFTEEAAERWW 1014

Query: 188  ADFGAKVCERHKVKSTD 205
            A+ GAK+CERH +KS +
Sbjct: 1015 AENGAKLCERHNIKSAE 1031

[Close]

BLAST of CSPI02G08440 vs. TrEMBL
Match: F6HPD3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g02140 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.2e-27
Identity = 67/125 (53.60%), Postives = 88/125 (70.40%), Query Frame = 1


Query: 81  MAEKMPEGQTAIVNSSTVTGQNGSNLNQLSTESLSMSINS-RLESNGISKGQTLSTGIKA 140
           MAE++PE   +I  S +   Q  + ++  S E+ S S+ S   ESNG S    LS+G KA
Sbjct: 1   MAERVPEEHISISKSGSSARQTPNIVDMFSNENHSTSLTSPESESNGSSVNPILSSGTKA 60

Query: 141 LNEKAEWVVQDEPGVYITLSTLPGGFNELKRVRFSRRHFTEAQAEKWWADFGAKVCERHK 200
             EK++WVVQDEPGVY+TLS+L GG NEL+RVRFSR+ FTE QAE WWA+ G+KVCERH 
Sbjct: 61  QTEKSDWVVQDEPGVYLTLSSLAGGGNELRRVRFSRKRFTEEQAEVWWAENGSKVCERHD 120

Query: 201 VKSTD 205
           ++S +
Sbjct: 121 IRSVE 125

[Close]

BLAST of CSPI02G08440 vs. TrEMBL
Match: A0A061EAK7_THECC (Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain, putative isoform 1 OS=Theobroma cacao GN=TCM_011750 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.9e-26
Identity = 74/135 (54.81%), Postives = 93/135 (68.89%), Query Frame = 1


Query: 68   RDQVQTSFAWLKEMAEKMPEGQTAIVNSSTVTGQNGSNLNQL-STESLSMS-INSRLESN 127
            ++ +++  A LKE+ + +P GQ A +NSS       SN+  L S ES + S I++  E N
Sbjct: 892  KEVIRSLTAQLKEVVDLLPAGQNAHINSSFT-----SNIEHLFSNESHATSMISTGSEVN 951

Query: 128  GISKGQTLSTGIKALNEKAEWVVQDEPGVYITLSTLPGGFNELKRVRFSRRHFTEAQAEK 187
            G S  +T+S G K   EK+E VVQDEPGVYITLS LP G NELKRVRFSR+HFTE QAEK
Sbjct: 952  GNS--ETISHGTKGKTEKSESVVQDEPGVYITLSPLPNGSNELKRVRFSRKHFTEDQAEK 1011

Query: 188  WWADFGAKVCERHKV 201
            WWA+ G KVCERH +
Sbjct: 1012 WWAENGPKVCERHNI 1019

[Close]

BLAST of CSPI02G08440 vs. TAIR10
Match: AT1G69710.1 (AT1G69710.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain)

HSP 1 Score: 112.8 bits (281), Expect = 2.4e-25
Identity = 62/136 (45.59%), Postives = 86/136 (63.24%), Query Frame = 1


Query: 68   RDQVQTSFAWLKEMAEKMPEGQTAIVNSSTVTGQNGSNLNQLSTESLSMSI---NSRLES 127
            ++ +++    LKEMAEK  +  +   NS     +    + Q S ++   S+   +S+ E+
Sbjct: 905  KEVIRSLTTQLKEMAEKQSQKDSISTNSKHTDKEKSETVTQTSNQTHIRSMVSQDSQNEN 964

Query: 128  NGISKGQTLSTGIKALNEKAEWVVQDEPGVYITLSTLPGGFNELKRVRFSRRHFTEAQAE 187
            N  SK  + + G +  N+K E VVQDEPGVY+TL +LPGG  ELKRVRFSR+ FTE QAE
Sbjct: 965  NLTSK--SFANGHRKQNDKPEKVVQDEPGVYLTLLSLPGGGTELKRVRFSRKQFTEEQAE 1024

Query: 188  KWWADFGAKVCERHKV 201
            KWW + GAKVCERH +
Sbjct: 1025 KWWGENGAKVCERHNI 1038

[Close]

BLAST of CSPI02G08440 vs. TAIR10
Match: AT5G12350.1 (AT5G12350.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain)

HSP 1 Score: 98.2 bits (243), Expect = 6.2e-21
Identity = 60/149 (40.27%), Postives = 87/149 (58.39%), Query Frame = 1


Query: 68   RDQVQTSFAWLKEMAEKMPEGQTAIVNSSTVTGQNGSNLNQLSTESLSMSINSR-LESNG 127
            ++ +++  A LK+MAE++P G    V S       GS+  ++   ++    NS+  E NG
Sbjct: 920  KEVIKSLTAQLKDMAERLPVGSARTVKSPPSLNSFGSSPGRIDPFNILNQANSQESEPNG 979

Query: 128  IS----KGQTLSTGI-------KALNEKAEWVVQDEPGVYITLSTLPGGFNELKRVRFSR 187
            I+       T++          +A NEK EWV QDEPGVYITL+ L GG  +LKRVRFSR
Sbjct: 980  ITTPMFSNGTMTPAFGNGEATNEARNEK-EWVEQDEPGVYITLTALAGGARDLKRVRFSR 1039

Query: 188  RHFTEAQAEKWWADFGAKVCERHKVKSTD 205
            + F+E QAE+WWAD   +V E++ V+  D
Sbjct: 1040 KRFSEIQAEQWWADNRGRVYEQYNVRMVD 1067

[Close]

BLAST of CSPI02G08440 vs. TAIR10
Match: AT5G19420.2 (AT5G19420.2 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain)

HSP 1 Score: 81.3 bits (199), Expect = 7.8e-16
Identity = 45/100 (45.00%), Postives = 62/100 (62.00%), Query Frame = 1


Query: 102  NGSNLNQLSTESLSMSINSRLESNGISKGQTLSTGIKALNEKAEWVVQDEPGVYITLSTL 161
            NG++     + S     N   E+  I++  T S   +  NE  EWV QDEPGVYITL+ L
Sbjct: 1026 NGTSTPVFDSGSYRQQANHAAEA--INRISTRSKESEPRNEN-EWVEQDEPGVYITLTAL 1085

Query: 162  PGGFNELKRVRFSRRHFTEAQAEKWWADFGAKVCERHKVK 202
             GG  +LKRVRFSR+ F+E QAE+WWA+   +V E++ V+
Sbjct: 1086 AGGARDLKRVRFSRKRFSEKQAEEWWAENRGRVYEQYNVR 1122

[Close]

BLAST of CSPI02G08440 vs. TAIR10
Match: AT5G42140.1 (AT5G42140.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain)

HSP 1 Score: 79.3 bits (194), Expect = 3.0e-15
Identity = 38/92 (41.30%), Postives = 56/92 (60.87%), Query Frame = 1


Query: 113  SLSMSINSRLESNGISKGQTLSTGIKALNEKAEWVVQDEPGVYITLSTLPGGFNELKRVR 172
            S  + I++    +G +   + ++   A   +AEW+ Q EPGVYITL  L  G  +LKRVR
Sbjct: 968  SEGVRISNGFSEDGRNSRSSAASASNASQVEAEWIEQYEPGVYITLLALGDGTRDLKRVR 1027

Query: 173  FSRRHFTEAQAEKWWADFGAKVCERHKVKSTD 205
            FSRR F E QAE WW++   +V E++ ++ TD
Sbjct: 1028 FSRRRFREQQAETWWSENRERVYEKYNIRGTD 1059

[Close]

BLAST of CSPI02G08440 vs. TAIR10
Match: AT1G76950.1 (AT1G76950.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain)

HSP 1 Score: 75.9 bits (185), Expect = 3.3e-14
Identity = 41/92 (44.57%), Postives = 57/92 (61.96%), Query Frame = 1


Query: 118  INSRLE----SNGISKGQTLSTGIKALNE-KAEWVVQDEPGVYITLSTLPGGFNELKRVR 177
            I+ R+E     N    G +  TG+   N+ +AEW+ Q EPGVYITL  L  G  +L+RVR
Sbjct: 993  ISERIEPFQFQNNSDNGSS-QTGVNNTNQVEAEWIEQYEPGVYITLVALHDGTRDLRRVR 1052

Query: 178  FSRRHFTEAQAEKWWADFGAKVCERHKVKSTD 205
            FSRR F E QAE WW++   KV E++ V+ ++
Sbjct: 1053 FSRRRFGEHQAETWWSENREKVYEKYNVRVSE 1083

[Close]

BLAST of CSPI02G08440 vs. NCBI nr
Match: gi|700206277|gb|KGN61396.1| (hypothetical protein Csa_2G110220 [Cucumis sativus])

HSP 1 Score: 255.4 bits (651), Expect = 8.6e-65
Identity = 128/137 (93.43%), Postives = 133/137 (97.08%), Query Frame = 1


Query: 68  RDQVQTSFAWLKEMAEKMPEGQTAIVNSSTVTGQNGSNLNQLSTESLSMSINSRLESNGI 127
           ++ +++  A LKEMAEKMPEGQTAIVNSSTVTGQNGSNLNQLSTESLSMSINSRLESNGI
Sbjct: 43  KEVIKSLAAQLKEMAEKMPEGQTAIVNSSTVTGQNGSNLNQLSTESLSMSINSRLESNGI 102

Query: 128 SKGQTLSTGIKALNEKAEWVVQDEPGVYITLSTLPGGFNELKRVRFSRRHFTEAQAEKWW 187
           SKGQTLSTGIKALNEKAEWVVQDEPGVYITLSTLPGGFNELKRVRFSRRHFTEAQAEKWW
Sbjct: 103 SKGQTLSTGIKALNEKAEWVVQDEPGVYITLSTLPGGFNELKRVRFSRRHFTEAQAEKWW 162

Query: 188 ADFGAKVCERHKVKSTD 205
           ADFGAKVCERHKVKSTD
Sbjct: 163 ADFGAKVCERHKVKSTD 179

[Close]

BLAST of CSPI02G08440 vs. NCBI nr
Match: gi|659082151|ref|XP_008441694.1| (PREDICTED: uncharacterized protein LOC103485768 isoform X3 [Cucumis melo])

HSP 1 Score: 243.0 bits (619), Expect = 4.4e-61
Identity = 121/137 (88.32%), Postives = 129/137 (94.16%), Query Frame = 1


Query: 68  RDQVQTSFAWLKEMAEKMPEGQTAIVNSSTVTGQNGSNLNQLSTESLSMSINSRLESNGI 127
           ++ +++  A LKEMAEKMPE QTAIVNSSTV+GQNGSNLNQLSTESLSMSINSRLESNGI
Sbjct: 704 KEVIKSLAAQLKEMAEKMPEAQTAIVNSSTVSGQNGSNLNQLSTESLSMSINSRLESNGI 763

Query: 128 SKGQTLSTGIKALNEKAEWVVQDEPGVYITLSTLPGGFNELKRVRFSRRHFTEAQAEKWW 187
           SK QTLSTGIK +NEKAEWVVQDEPGVYITLS LPGGFNELKRVRFSRRHFTEAQAEKWW
Sbjct: 764 SKSQTLSTGIKTVNEKAEWVVQDEPGVYITLSALPGGFNELKRVRFSRRHFTEAQAEKWW 823

Query: 188 ADFGAKVCERHKVKSTD 205
           A+FGAKVCERHKVKSTD
Sbjct: 824 AEFGAKVCERHKVKSTD 840

[Close]

BLAST of CSPI02G08440 vs. NCBI nr
Match: gi|659082153|ref|XP_008441696.1| (PREDICTED: uncharacterized protein LOC103485768 isoform X4 [Cucumis melo])

HSP 1 Score: 243.0 bits (619), Expect = 4.4e-61
Identity = 121/137 (88.32%), Postives = 129/137 (94.16%), Query Frame = 1


Query: 68  RDQVQTSFAWLKEMAEKMPEGQTAIVNSSTVTGQNGSNLNQLSTESLSMSINSRLESNGI 127
           ++ +++  A LKEMAEKMPE QTAIVNSSTV+GQNGSNLNQLSTESLSMSINSRLESNGI
Sbjct: 702 KEVIKSLAAQLKEMAEKMPEAQTAIVNSSTVSGQNGSNLNQLSTESLSMSINSRLESNGI 761

Query: 128 SKGQTLSTGIKALNEKAEWVVQDEPGVYITLSTLPGGFNELKRVRFSRRHFTEAQAEKWW 187
           SK QTLSTGIK +NEKAEWVVQDEPGVYITLS LPGGFNELKRVRFSRRHFTEAQAEKWW
Sbjct: 762 SKSQTLSTGIKTVNEKAEWVVQDEPGVYITLSALPGGFNELKRVRFSRRHFTEAQAEKWW 821

Query: 188 ADFGAKVCERHKVKSTD 205
           A+FGAKVCERHKVKSTD
Sbjct: 822 AEFGAKVCERHKVKSTD 838

[Close]

BLAST of CSPI02G08440 vs. NCBI nr
Match: gi|659082147|ref|XP_008441692.1| (PREDICTED: uncharacterized protein LOC103485768 isoform X1 [Cucumis melo])

HSP 1 Score: 243.0 bits (619), Expect = 4.4e-61
Identity = 121/137 (88.32%), Postives = 129/137 (94.16%), Query Frame = 1


Query: 68  RDQVQTSFAWLKEMAEKMPEGQTAIVNSSTVTGQNGSNLNQLSTESLSMSINSRLESNGI 127
           ++ +++  A LKEMAEKMPE QTAIVNSSTV+GQNGSNLNQLSTESLSMSINSRLESNGI
Sbjct: 846 KEVIKSLAAQLKEMAEKMPEAQTAIVNSSTVSGQNGSNLNQLSTESLSMSINSRLESNGI 905

Query: 128 SKGQTLSTGIKALNEKAEWVVQDEPGVYITLSTLPGGFNELKRVRFSRRHFTEAQAEKWW 187
           SK QTLSTGIK +NEKAEWVVQDEPGVYITLS LPGGFNELKRVRFSRRHFTEAQAEKWW
Sbjct: 906 SKSQTLSTGIKTVNEKAEWVVQDEPGVYITLSALPGGFNELKRVRFSRRHFTEAQAEKWW 965

Query: 188 ADFGAKVCERHKVKSTD 205
           A+FGAKVCERHKVKSTD
Sbjct: 966 AEFGAKVCERHKVKSTD 982

[Close]

BLAST of CSPI02G08440 vs. NCBI nr
Match: gi|703079673|ref|XP_010091214.1| (putative E3 ubiquitin-protein ligase HERC1 [Morus notabilis])

HSP 1 Score: 142.5 bits (358), Expect = 8.1e-31
Identity = 75/137 (54.74%), Postives = 98/137 (71.53%), Query Frame = 1


Query: 68   RDQVQTSFAWLKEMAEKMPEGQTAIVNSSTVTGQNGSNLNQLSTESLSMSINS-RLESNG 127
            ++ +++  A LKEMAE++PEG T   ++     ++ +  NQ+S E+   ++N+   ESNG
Sbjct: 881  KEVIKSLTAQLKEMAERLPEGHTISCSTVPTAARDTNFSNQISYETTLTNMNTPERESNG 940

Query: 128  ISKGQTLSTGIKALNE-KAEWVVQDEPGVYITLSTLPGGFNELKRVRFSRRHFTEAQAEK 187
             S  Q LS G KA    K EWV+QDEPGVYITLS+LPGG NELKRVRFSR+HFTE QAE+
Sbjct: 941  NSVNQILSNGSKAQQTGKTEWVMQDEPGVYITLSSLPGGGNELKRVRFSRKHFTEEQAER 1000

Query: 188  WWADFGAKVCERHKVKS 203
            WWA+ GAK CERH V+S
Sbjct: 1001 WWAENGAKTCERHNVRS 1017

The following BLAST results are available for this feature:

BLAST of CSPI02G08440 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BRXL1_ORYSJ	1.2e-13	39.80	Protein Brevis radix-like 1 OS=Oryza sativa subsp. japonica GN=BRXL1 PE=2 SV=1	[more]
BRXL4_ARATH	1.0e-12	56.67	Protein Brevis radix-like 4 OS=Arabidopsis thaliana GN=BRXL4 PE=2 SV=1	[more]
BRXL3_ARATH	1.4e-11	38.64	Protein Brevis radix-like 3 OS=Arabidopsis thaliana GN=BRXL3 PE=2 SV=2	[more]
BRXL2_ARATH	1.2e-10	38.46	Protein Brevis radix-like 2 OS=Arabidopsis thaliana GN=BRXL2 PE=2 SV=1	[more]
BRX_ARATH	1.2e-10	49.12	Protein BREVIS RADIX OS=Arabidopsis thaliana GN=BRX PE=1 SV=2	[more]

BLAST of CSPI02G08440 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LN51_CUCSA	6.0e-65	93.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G110220 PE=4 SV=1	[more]
W9QMX2_9ROSA	5.7e-31	54.74	Putative E3 ubiquitin-protein ligase HERC1 OS=Morus notabilis GN=L484_006532 PE=...	[more]
M5XJC8_PRUPE	2.4e-29	51.82	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020628mg PE=4 SV=1	[more]
F6HPD3_VITVI	2.2e-27	53.60	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g02140 PE=4 SV=...	[more]
A0A061EAK7_THECC	1.9e-26	54.81	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain,...	[more]

BLAST of CSPI02G08440 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G69710.1	2.4e-25	45.59	Regulator of chromosome condensation (RCC1) family with FYVE zinc fi...	[more]
AT5G12350.1	6.2e-21	40.27	Regulator of chromosome condensation (RCC1) family with FYVE zinc fi...	[more]
AT5G19420.2	7.8e-16	45.00	Regulator of chromosome condensation (RCC1) family with FYVE zinc fi...	[more]
AT5G42140.1	3.0e-15	41.30	Regulator of chromosome condensation (RCC1) family with FYVE zinc fi...	[more]
AT1G76950.1	3.3e-14	44.57	Regulator of chromosome condensation (RCC1) family with FYVE zinc fi...	[more]

BLAST of CSPI02G08440 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206277\|gb\|KGN61396.1\|	8.6e-65	93.43	hypothetical protein Csa_2G110220 [Cucumis sativus]	[more]
gi\|659082151\|ref\|XP_008441694.1\|	4.4e-61	88.32	PREDICTED: uncharacterized protein LOC103485768 isoform X3 [Cucumis melo]	[more]
gi\|659082153\|ref\|XP_008441696.1\|	4.4e-61	88.32	PREDICTED: uncharacterized protein LOC103485768 isoform X4 [Cucumis melo]	[more]
gi\|659082147\|ref\|XP_008441692.1\|	4.4e-61	88.32	PREDICTED: uncharacterized protein LOC103485768 isoform X1 [Cucumis melo]	[more]
gi\|703079673\|ref\|XP_010091214.1\|	8.1e-31	54.74	putative E3 ubiquitin-protein ligase HERC1 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013591	Brevis_radix_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G08440.1	CSPI02G08440.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013591	Brevis radix (BRX) domain	PFAM	PF08381	BRX	coord: 143..198 score: 3.2
IPR013591	Brevis radix (BRX) domain	PROFILE	PS51514	BRX	coord: 144..199 score: 28
None	No IPR available	PANTHER	PTHR22870	REGULATOR OF CHROMOSOME CONDENSATION	coord: 78..204 score: 1.4
None	No IPR available	PANTHER	PTHR22870:SF166	PROTEIN RCC2	coord: 78..204 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI02G08440	Cla003364	Watermelon (97103) v1	cpiwmB160
CSPI02G08440	Csa2G110220	Cucumber (Chinese Long) v2	cpicuB065
CSPI02G08440	MELO3C008528	Melon (DHL92) v3.5.1	cpimeB142
CSPI02G08440	ClCG11G009370	Watermelon (Charleston Gray)	cpiwcgB108
CSPI02G08440	Bhi06G000742	Wax gourd	cpiwgoB140
CSPI02G08440	CsGy2G008750	Cucumber (Gy14) v2	cgybcpiB056

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI02G08440	Cucurbita pepo (Zucchini)	cpecpiB103
CSPI02G08440	Bottle gourd (USVL1VR-Ls)	cpilsiB096
CSPI02G08440	Melon (DHL92) v3.6.1	cpimedB135
CSPI02G08440	Cucumber (Chinese Long) v3	cpicucB080
CSPI02G08440	Cucumber (Gy14) v1	cgycpiB403
CSPI02G08440	Cucurbita maxima (Rimu)	cmacpiB802
CSPI02G08440	Cucurbita moschata (Rifu)	cmocpiB784
CSPI02G08440	Watermelon (97103) v1	cpiwmB168