MELO3C008528 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C008528
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Regulator of chromosome condensation-like protein with FYVE zinc finger domain-containing protein
Location	chr5 : 11900084 .. 11900510 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGAAAAAATGCCAGAGGCACAAACTGCTATTGTTAACTCTAGCACTGTTTCTGGGCAAAATGGTAGTAATTTGAACCAGCTTTCCACCGAGAGCCTTTCAATGAGCATAAACTCACGTTTGGAGTCGAATGGCATTTCAAAAAGTCAAACCTTATCAACTGGAATCAAAACAGTAAACGAGAAGGCAGAATGGGTTGTACAAGACGAACCAGGCGTGTATATAACTTTGTCTGCTTTGCCTGGAGGATTCAATGAGCTGAAACGAGTTCGTTTCAGGTACTAAATTTAGCTCCCTTTTTGTGAAAGTTTATTGAGCGCTTACATGACATTAAATTTTACTTGATAGTATGATGGCTTTGTCATCAATCCATATCTTTCTAGTGCTGATTGTTGGAATTCCTTACCTCATCGTAACCCCTTAA

mRNA sequence

ATGGCTGAAAAAATGCCAGAGGCACAAACTGCTATTGTTAACTCTAGCACTGTTTCTGGGCAAAATGGTAGTAATTTGAACCAGCTTTCCACCGAGAGCCTTTCAATGAGCATAAACTCACGTTTGGAGTCGAATGGCATTTCAAAAAGTCAAACCTTATCAACTGGAATCAAAACAGTAAACGAGAAGGCAGAATGGGTTGTACAAGACGAACCAGGCGTGTATATAACTTTGTCTGCTTTGCCTGGAGGATTCAATGAGCTGAAACGAGTTCGTTTCAGTATGATGGCTTTGTCATCAATCCATATCTTTCTAGTGCTGATTGTTGGAATTCCTTACCTCATCGTAACCCCTTAA

Coding sequence (CDS)

ATGGCTGAAAAAATGCCAGAGGCACAAACTGCTATTGTTAACTCTAGCACTGTTTCTGGGCAAAATGGTAGTAATTTGAACCAGCTTTCCACCGAGAGCCTTTCAATGAGCATAAACTCACGTTTGGAGTCGAATGGCATTTCAAAAAGTCAAACCTTATCAACTGGAATCAAAACAGTAAACGAGAAGGCAGAATGGGTTGTACAAGACGAACCAGGCGTGTATATAACTTTGTCTGCTTTGCCTGGAGGATTCAATGAGCTGAAACGAGTTCGTTTCAGTATGATGGCTTTGTCATCAATCCATATCTTTCTAGTGCTGATTGTTGGAATTCCTTACCTCATCGTAACCCCTTAA

Protein sequence

MAEKMPEAQTAIVNSSTVSGQNGSNLNQLSTESLSMSINSRLESNGISKSQTLSTGIKTVNEKAEWVVQDEPGVYITLSALPGGFNELKRVRFSMMALSSIHIFLVLIVGIPYLIVTP*

Homology

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BLAST of MELO3C008528 vs. Swiss-Prot
Match: BRXL1_ORYSJ (Protein Brevis radix-like 1 OS=Oryza sativa subsp. japonica GN=BRXL1 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.6e-10
Identity = 35/82 (42.68%), Postives = 50/82 (60.98%), Query Frame = 1


Query: 24  SNLNQLSTESLSMSINSRLESNG--ISKSQTLSTGIKTVNEKA-EWVVQDEPGVYITLSA 83
           S+++   TE+ SM  + R  S+   + +S+ LS  +   +++  EWV +DEPGVYIT+ A
Sbjct: 299 SSISGAKTETSSMDASMRSSSSPEEVDRSRELSVSVSNASDQEREWVEEDEPGVYITIRA 358

Query: 84  LPGGFNELKRVRFSMMALSSIH 103
           LPGG  EL+RVRFS    S +H
Sbjct: 359 LPGGIRELRRVRFSREKFSEMH 380

HSP 2 Score: 45.8 bits (107), Expect = 3.8e-04
Identity = 21/34 (61.76%), Postives = 23/34 (67.65%), Query Frame = 1


Query: 61  NEKAEWVVQDEPGVYITLSALPGGFNELKRVRFS 95
           +E  EWV Q EPGV IT  +LP G N+LKR+RFS
Sbjct: 147 DEAKEWVAQVEPGVLITFLSLPEGGNDLKRIRFS 180

[Close]

BLAST of MELO3C008528 vs. Swiss-Prot
Match: BRXL3_ARATH (Protein Brevis radix-like 3 OS=Arabidopsis thaliana GN=BRXL3 PE=2 SV=2)

HSP 1 Score: 58.2 bits (139), Expect = 7.3e-08
Identity = 29/72 (40.28%), Postives = 42/72 (58.33%), Query Frame = 1


Query: 31  TESLSMSINSRLESNGISKSQTLSTGIKTVNEKAEWVVQDEPGVYITLSALPGGFNELKR 90
           T++ + SI+    S+ + +S+ +S      + ++EWV QDEPG+YIT+ ALP G  EL+R
Sbjct: 283 TKTETSSIDGSARSSSVDRSEEVSVS-NASDMESEWVEQDEPGIYITIRALPDGNRELRR 342

Query: 91  VRFSMMALSSIH 103
           VRFS       H
Sbjct: 343 VRFSRDKFGETH 353

HSP 2 Score: 43.9 bits (102), Expect = 1.4e-03
Identity = 20/33 (60.61%), Postives = 22/33 (66.67%), Query Frame = 1


Query: 61  NEKAEWVVQDEPGVYITLSALPGGFNELKRVRF 94
           +E  EWV Q EPGV IT  +LP G N+LKR+RF
Sbjct: 137 DEVKEWVAQVEPGVLITFVSLPQGGNDLKRIRF 169

[Close]

BLAST of MELO3C008528 vs. Swiss-Prot
Match: BRXL4_ARATH (Protein Brevis radix-like 4 OS=Arabidopsis thaliana GN=BRXL4 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.1e-07
Identity = 32/72 (44.44%), Postives = 38/72 (52.78%), Query Frame = 1


Query: 31  TESLSMSINSRLESNGISKSQTLSTGIKTVNEKAEWVVQDEPGVYITLSALPGGFNELKR 90
           T S+  SI S   S    +S+ +S      +   EWV QDEPGVYIT+  LPGG  EL+R
Sbjct: 298 TSSIDASIRSS-SSRDADRSEEMSVS-NASDVDNEWVEQDEPGVYITIKVLPGGKRELRR 357

Query: 91  VRFSMMALSSIH 103
           VRFS      +H
Sbjct: 358 VRFSRERFGEMH 367

HSP 2 Score: 48.5 bits (114), Expect = 5.8e-05
Identity = 22/33 (66.67%), Postives = 23/33 (69.70%), Query Frame = 1


Query: 62  EKAEWVVQDEPGVYITLSALPGGFNELKRVRFS 95
           E  EWV Q EPGV IT  +LPGG N+LKR+RFS
Sbjct: 148 EPKEWVAQVEPGVLITFVSLPGGGNDLKRIRFS 180

[Close]

BLAST of MELO3C008528 vs. Swiss-Prot
Match: BRXL2_ARATH (Protein Brevis radix-like 2 OS=Arabidopsis thaliana GN=BRXL2 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.1e-06
Identity = 31/85 (36.47%), Postives = 42/85 (49.41%), Query Frame = 1


Query: 10  TAIVNSSTVSGQNGSNLNQLSTESLSMSINSRLESNGISKSQTLSTGIKTVNEKAEWVVQ 69
           + +  +  +S  +G+     S +  + S  SR E       + LS      + + EWV Q
Sbjct: 266 SGLATTPKLSSISGTKTETSSVDESARSSFSREEEEADHSGEELSVS-NASDIETEWVEQ 325

Query: 70  DEPGVYITLSALPGGFNELKRVRFS 95
           DE GVYIT+ ALP G  EL+RVRFS
Sbjct: 326 DEAGVYITIRALPDGTRELRRVRFS 349

HSP 2 Score: 46.6 bits (109), Expect = 2.2e-04
Identity = 27/66 (40.91%), Postives = 34/66 (51.52%), Query Frame = 1


Query: 29  LSTESLSMSINSRLESNGISKSQTLSTGIKTVNEKAEWVVQDEPGVYITLSALPGGFNEL 88
           LS E    S++ R ES    + +         +E  EWV Q EPGV IT  +LP G N++
Sbjct: 117 LSGEGTPESMSGRTESTVFMEEE---------DELKEWVAQVEPGVLITFVSLPEGGNDM 173

Query: 89  KRVRFS 95
           KR+RFS
Sbjct: 177 KRIRFS 173

[Close]

BLAST of MELO3C008528 vs. Swiss-Prot
Match: BRXL1_ARATH (Protein Brevis radix-like 1 OS=Arabidopsis thaliana GN=BRXL1 PE=2 SV=2)

HSP 1 Score: 51.2 bits (121), Expect = 9.0e-06
Identity = 22/40 (55.00%), Postives = 25/40 (62.50%), Query Frame = 1


Query: 63  KAEWVVQDEPGVYITLSALPGGFNELKRVRFSMMALSSIH 103
           + EWV +DEPGVYIT+  LP G  EL+RVRFS      +H
Sbjct: 275 QGEWVEEDEPGVYITIRQLPDGTRELRRVRFSRERFGEVH 314

HSP 2 Score: 46.6 bits (109), Expect = 2.2e-04
Identity = 20/34 (58.82%), Postives = 24/34 (70.59%), Query Frame = 1


Query: 61  NEKAEWVVQDEPGVYITLSALPGGFNELKRVRFS 95
           +E  EW+ Q EPGV+IT  +LP G N+LKR+RFS
Sbjct: 134 DEPKEWMAQVEPGVHITFVSLPSGGNDLKRIRFS 167

[Close]

BLAST of MELO3C008528 vs. TrEMBL
Match: A0A0A0LN51_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G110220 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.3e-40
Identity = 88/94 (93.62%), Postives = 90/94 (95.74%), Query Frame = 1


Query: 1   MAEKMPEAQTAIVNSSTVSGQNGSNLNQLSTESLSMSINSRLESNGISKSQTLSTGIKTV 60
           MAEKMPE QTAIVNSSTV+GQNGSNLNQLSTESLSMSINSRLESNGISK QTLSTGIK +
Sbjct: 56  MAEKMPEGQTAIVNSSTVTGQNGSNLNQLSTESLSMSINSRLESNGISKGQTLSTGIKAL 115

Query: 61  NEKAEWVVQDEPGVYITLSALPGGFNELKRVRFS 95
           NEKAEWVVQDEPGVYITLS LPGGFNELKRVRFS
Sbjct: 116 NEKAEWVVQDEPGVYITLSTLPGGFNELKRVRFS 149

[Close]

BLAST of MELO3C008528 vs. TrEMBL
Match: F6HPD3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g02140 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.3e-15
Identity = 48/95 (50.53%), Postives = 65/95 (68.42%), Query Frame = 1


Query: 1  MAEKMPEAQTAIVNSSTVSGQNGSNLNQLSTESLSMSINS-RLESNGISKSQTLSTGIKT 60
          MAE++PE   +I  S + + Q  + ++  S E+ S S+ S   ESNG S +  LS+G K 
Sbjct: 1  MAERVPEEHISISKSGSSARQTPNIVDMFSNENHSTSLTSPESESNGSSVNPILSSGTKA 60

Query: 61 VNEKAEWVVQDEPGVYITLSALPGGFNELKRVRFS 95
            EK++WVVQDEPGVY+TLS+L GG NEL+RVRFS
Sbjct: 61 QTEKSDWVVQDEPGVYLTLSSLAGGGNELRRVRFS 95

[Close]

BLAST of MELO3C008528 vs. TrEMBL
Match: W9QMX2_9ROSA (Putative E3 ubiquitin-protein ligase HERC1 OS=Morus notabilis GN=L484_006532 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.6e-14
Identity = 49/96 (51.04%), Postives = 65/96 (67.71%), Query Frame = 1


Query: 1   MAEKMPEAQTAIVNSSTVSGQNGSNLNQLSTESLSMSINS-RLESNGISKSQTLSTGIKT 60
           MAE++PE  T   ++   + ++ +  NQ+S E+   ++N+   ESNG S +Q LS G K 
Sbjct: 894 MAERLPEGHTISCSTVPTAARDTNFSNQISYETTLTNMNTPERESNGNSVNQILSNGSKA 953

Query: 61  VNE-KAEWVVQDEPGVYITLSALPGGFNELKRVRFS 95
               K EWV+QDEPGVYITLS+LPGG NELKRVRFS
Sbjct: 954 QQTGKTEWVMQDEPGVYITLSSLPGGGNELKRVRFS 989

[Close]

BLAST of MELO3C008528 vs. TrEMBL
Match: M5XJC8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020628mg PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 4.0e-13
Identity = 47/94 (50.00%), Postives = 61/94 (64.89%), Query Frame = 1


Query: 1    MAEKMPEAQTAIVNSSTVSGQNGSNLNQLSTESLSMSINSRLESNGISKSQTLSTGIKTV 60
            MAE+MPE Q    NS +++G   +  +QLS +S   +I +   SNG S  + L+ G K  
Sbjct: 908  MAERMPEGQIGSCNSGSMAGHAINFADQLSKDSHLTNITTPDLSNGNSMDRILANGTKGQ 967

Query: 61   NEKAEWVVQDEPGVYITLSALPGGFNELKRVRFS 95
              KAE V+QDEPGVYITL +LP G NEL+RVRFS
Sbjct: 968  TGKAERVLQDEPGVYITLCSLPDGGNELRRVRFS 1001

[Close]

BLAST of MELO3C008528 vs. TrEMBL
Match: B9S8T2_RICCO (Ran GTPase binding protein, putative OS=Ricinus communis GN=RCOM_0835650 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 5.3e-13
Identity = 46/95 (48.42%), Postives = 62/95 (65.26%), Query Frame = 1


Query: 1    MAEKMPEAQTAIVNSSTVSGQNGSNLNQLSTESLSMS-INSRLESNGISKSQTLSTGIKT 60
            MAEK+PE ++    S +++    S  N  S+ES S S I+   +SNG S    +    K+
Sbjct: 914  MAEKLPERRSPSPISGSITKHISSAQNISSSESHSSSDISPETDSNGNSSDHHMLYRSKS 973

Query: 61   VNEKAEWVVQDEPGVYITLSALPGGFNELKRVRFS 95
             N+K +WV+Q EPGVYITLS+LPGG NELKR+RFS
Sbjct: 974  QNDKPQWVIQAEPGVYITLSSLPGGTNELKRIRFS 1008

[Close]

BLAST of MELO3C008528 vs. TAIR10
Match: AT1G69710.1 (AT1G69710.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain)

HSP 1 Score: 68.2 bits (165), Expect = 4.0e-12
Identity = 42/97 (43.30%), Postives = 55/97 (56.70%), Query Frame = 1


Query: 1    MAEKMPEAQTAIVNSSTVSGQNGSNLNQLSTESLSMSI---NSRLESNGISKSQTLSTGI 60
            MAEK  +  +   NS     +    + Q S ++   S+   +S+ E+N  SKS   + G 
Sbjct: 918  MAEKQSQKDSISTNSKHTDKEKSETVTQTSNQTHIRSMVSQDSQNENNLTSKS--FANGH 977

Query: 61   KTVNEKAEWVVQDEPGVYITLSALPGGFNELKRVRFS 95
            +  N+K E VVQDEPGVY+TL +LPGG  ELKRVRFS
Sbjct: 978  RKQNDKPEKVVQDEPGVYLTLLSLPGGGTELKRVRFS 1012

[Close]

BLAST of MELO3C008528 vs. TAIR10
Match: AT5G12350.1 (AT5G12350.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain)

HSP 1 Score: 62.8 bits (151), Expect = 1.7e-10
Identity = 46/114 (40.35%), Postives = 56/114 (49.12%), Query Frame = 1


Query: 1    MAEKMPEAQTAIVNSSTVSGQNGSNLNQLSTESLSMSINSR-LESNGISKSQTLSTGIKT 60
            MAE++P      V S       GS+  ++   ++    NS+  E NGI+ +   S G  T
Sbjct: 933  MAERLPVGSARTVKSPPSLNSFGSSPGRIDPFNILNQANSQESEPNGIT-TPMFSNGTMT 992

Query: 61   V------------NEKAEWVVQDEPGVYITLSALPGGFNELKRVRFSMMALSSI 102
                         NEK EWV QDEPGVYITL+AL GG  +LKRVRFS    S I
Sbjct: 993  PAFGNGEATNEARNEK-EWVEQDEPGVYITLTALAGGARDLKRVRFSRKRFSEI 1044

[Close]

BLAST of MELO3C008528 vs. TAIR10
Match: AT1G54180.1 (AT1G54180.1 BREVIS RADIX-like 3)

HSP 1 Score: 58.2 bits (139), Expect = 4.1e-09
Identity = 29/72 (40.28%), Postives = 42/72 (58.33%), Query Frame = 1


Query: 31  TESLSMSINSRLESNGISKSQTLSTGIKTVNEKAEWVVQDEPGVYITLSALPGGFNELKR 90
           T++ + SI+    S+ + +S+ +S      + ++EWV QDEPG+YIT+ ALP G  EL+R
Sbjct: 283 TKTETSSIDGSARSSSVDRSEEVSVS-NASDMESEWVEQDEPGIYITIRALPDGNRELRR 342

Query: 91  VRFSMMALSSIH 103
           VRFS       H
Sbjct: 343 VRFSRDKFGETH 353

HSP 2 Score: 43.9 bits (102), Expect = 8.1e-05
Identity = 20/33 (60.61%), Postives = 22/33 (66.67%), Query Frame = 1


Query: 61  NEKAEWVVQDEPGVYITLSALPGGFNELKRVRF 94
           +E  EWV Q EPGV IT  +LP G N+LKR+RF
Sbjct: 137 DEVKEWVAQVEPGVLITFVSLPQGGNDLKRIRF 169

[Close]

BLAST of MELO3C008528 vs. TAIR10
Match: AT5G20540.1 (AT5G20540.1 BREVIS RADIX-like 4)

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-08
Identity = 32/72 (44.44%), Postives = 38/72 (52.78%), Query Frame = 1


Query: 31  TESLSMSINSRLESNGISKSQTLSTGIKTVNEKAEWVVQDEPGVYITLSALPGGFNELKR 90
           T S+  SI S   S    +S+ +S      +   EWV QDEPGVYIT+  LPGG  EL+R
Sbjct: 298 TSSIDASIRSS-SSRDADRSEEMSVS-NASDVDNEWVEQDEPGVYITIKVLPGGKRELRR 357

Query: 91  VRFSMMALSSIH 103
           VRFS      +H
Sbjct: 358 VRFSRERFGEMH 367

HSP 2 Score: 48.5 bits (114), Expect = 3.3e-06
Identity = 22/33 (66.67%), Postives = 23/33 (69.70%), Query Frame = 1


Query: 62  EKAEWVVQDEPGVYITLSALPGGFNELKRVRFS 95
           E  EWV Q EPGV IT  +LPGG N+LKR+RFS
Sbjct: 148 EPKEWVAQVEPGVLITFVSLPGGGNDLKRIRFS 180

[Close]

BLAST of MELO3C008528 vs. TAIR10
Match: AT5G19420.2 (AT5G19420.2 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain)

HSP 1 Score: 55.8 bits (133), Expect = 2.0e-08
Identity = 35/78 (44.87%), Postives = 42/78 (53.85%), Query Frame = 1


Query: 22   NGSNLNQLSTESLSMSINSRLESNGISKSQTLSTGIKTVNEKAEWVVQDEPGVYITLSAL 81
            NG++     + S     N   E+  I++  T S   +  NE  EWV QDEPGVYITL+AL
Sbjct: 1026 NGTSTPVFDSGSYRQQANHAAEA--INRISTRSKESEPRNEN-EWVEQDEPGVYITLTAL 1085

Query: 82   PGGFNELKRVRFSMMALS 100
             GG  +LKRVRFS    S
Sbjct: 1086 AGGARDLKRVRFSRKRFS 1100

[Close]

BLAST of MELO3C008528 vs. NCBI nr
Match: gi|659082151|ref|XP_008441694.1| (PREDICTED: uncharacterized protein LOC103485768 isoform X3 [Cucumis melo])

HSP 1 Score: 182.6 bits (462), Expect = 4.1e-43
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1


Query: 1   MAEKMPEAQTAIVNSSTVSGQNGSNLNQLSTESLSMSINSRLESNGISKSQTLSTGIKTV 60
           MAEKMPEAQTAIVNSSTVSGQNGSNLNQLSTESLSMSINSRLESNGISKSQTLSTGIKTV
Sbjct: 717 MAEKMPEAQTAIVNSSTVSGQNGSNLNQLSTESLSMSINSRLESNGISKSQTLSTGIKTV 776

Query: 61  NEKAEWVVQDEPGVYITLSALPGGFNELKRVRFS 95
           NEKAEWVVQDEPGVYITLSALPGGFNELKRVRFS
Sbjct: 777 NEKAEWVVQDEPGVYITLSALPGGFNELKRVRFS 810

[Close]

BLAST of MELO3C008528 vs. NCBI nr
Match: gi|659082147|ref|XP_008441692.1| (PREDICTED: uncharacterized protein LOC103485768 isoform X1 [Cucumis melo])

HSP 1 Score: 182.6 bits (462), Expect = 4.1e-43
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1


Query: 1   MAEKMPEAQTAIVNSSTVSGQNGSNLNQLSTESLSMSINSRLESNGISKSQTLSTGIKTV 60
           MAEKMPEAQTAIVNSSTVSGQNGSNLNQLSTESLSMSINSRLESNGISKSQTLSTGIKTV
Sbjct: 859 MAEKMPEAQTAIVNSSTVSGQNGSNLNQLSTESLSMSINSRLESNGISKSQTLSTGIKTV 918

Query: 61  NEKAEWVVQDEPGVYITLSALPGGFNELKRVRFS 95
           NEKAEWVVQDEPGVYITLSALPGGFNELKRVRFS
Sbjct: 919 NEKAEWVVQDEPGVYITLSALPGGFNELKRVRFS 952

[Close]

BLAST of MELO3C008528 vs. NCBI nr
Match: gi|659082153|ref|XP_008441696.1| (PREDICTED: uncharacterized protein LOC103485768 isoform X4 [Cucumis melo])

HSP 1 Score: 182.6 bits (462), Expect = 4.1e-43
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1


Query: 1   MAEKMPEAQTAIVNSSTVSGQNGSNLNQLSTESLSMSINSRLESNGISKSQTLSTGIKTV 60
           MAEKMPEAQTAIVNSSTVSGQNGSNLNQLSTESLSMSINSRLESNGISKSQTLSTGIKTV
Sbjct: 715 MAEKMPEAQTAIVNSSTVSGQNGSNLNQLSTESLSMSINSRLESNGISKSQTLSTGIKTV 774

Query: 61  NEKAEWVVQDEPGVYITLSALPGGFNELKRVRFS 95
           NEKAEWVVQDEPGVYITLSALPGGFNELKRVRFS
Sbjct: 775 NEKAEWVVQDEPGVYITLSALPGGFNELKRVRFS 808

[Close]

BLAST of MELO3C008528 vs. NCBI nr
Match: gi|700206277|gb|KGN61396.1| (hypothetical protein Csa_2G110220 [Cucumis sativus])

HSP 1 Score: 173.7 bits (439), Expect = 1.9e-40
Identity = 88/94 (93.62%), Postives = 90/94 (95.74%), Query Frame = 1


Query: 1   MAEKMPEAQTAIVNSSTVSGQNGSNLNQLSTESLSMSINSRLESNGISKSQTLSTGIKTV 60
           MAEKMPE QTAIVNSSTV+GQNGSNLNQLSTESLSMSINSRLESNGISK QTLSTGIK +
Sbjct: 56  MAEKMPEGQTAIVNSSTVTGQNGSNLNQLSTESLSMSINSRLESNGISKGQTLSTGIKAL 115

Query: 61  NEKAEWVVQDEPGVYITLSALPGGFNELKRVRFS 95
           NEKAEWVVQDEPGVYITLS LPGGFNELKRVRFS
Sbjct: 116 NEKAEWVVQDEPGVYITLSTLPGGFNELKRVRFS 149

[Close]

BLAST of MELO3C008528 vs. NCBI nr
Match: gi|296086391|emb|CBI31980.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 89.0 bits (219), Expect = 6.2e-15
Identity = 48/95 (50.53%), Postives = 65/95 (68.42%), Query Frame = 1


Query: 1   MAEKMPEAQTAIVNSSTVSGQNGSNLNQLSTESLSMSINS-RLESNGISKSQTLSTGIKT 60
           MAE++PE   +I  S + + Q  + ++  S E+ S S+ S   ESNG S +  LS+G K 
Sbjct: 214 MAERVPEEHISISKSGSSARQTPNIVDMFSNENHSTSLTSPESESNGSSVNPILSSGTKA 273

Query: 61  VNEKAEWVVQDEPGVYITLSALPGGFNELKRVRFS 95
             EK++WVVQDEPGVY+TLS+L GG NEL+RVRFS
Sbjct: 274 QTEKSDWVVQDEPGVYLTLSSLAGGGNELRRVRFS 308

The following BLAST results are available for this feature:

BLAST of MELO3C008528 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BRXL1_ORYSJ	1.6e-10	42.68	Protein Brevis radix-like 1 OS=Oryza sativa subsp. japonica GN=BRXL1 PE=2 SV=1	[more]
BRXL3_ARATH	7.3e-08	40.28	Protein Brevis radix-like 3 OS=Arabidopsis thaliana GN=BRXL3 PE=2 SV=2	[more]
BRXL4_ARATH	2.1e-07	44.44	Protein Brevis radix-like 4 OS=Arabidopsis thaliana GN=BRXL4 PE=2 SV=1	[more]
BRXL2_ARATH	3.1e-06	36.47	Protein Brevis radix-like 2 OS=Arabidopsis thaliana GN=BRXL2 PE=2 SV=1	[more]
BRXL1_ARATH	9.0e-06	55.00	Protein Brevis radix-like 1 OS=Arabidopsis thaliana GN=BRXL1 PE=2 SV=2	[more]

BLAST of MELO3C008528 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LN51_CUCSA	1.3e-40	93.62	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G110220 PE=4 SV=1	[more]
F6HPD3_VITVI	4.3e-15	50.53	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g02140 PE=4 SV=...	[more]
W9QMX2_9ROSA	1.6e-14	51.04	Putative E3 ubiquitin-protein ligase HERC1 OS=Morus notabilis GN=L484_006532 PE=...	[more]
M5XJC8_PRUPE	4.0e-13	50.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020628mg PE=4 SV=1	[more]
B9S8T2_RICCO	5.3e-13	48.42	Ran GTPase binding protein, putative OS=Ricinus communis GN=RCOM_0835650 PE=4 SV...	[more]

BLAST of MELO3C008528 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G69710.1	4.0e-12	43.30	Regulator of chromosome condensation (RCC1) family with FYVE zinc fi...	[more]
AT5G12350.1	1.7e-10	40.35	Regulator of chromosome condensation (RCC1) family with FYVE zinc fi...	[more]
AT1G54180.1	4.1e-09	40.28	BREVIS RADIX-like 3	[more]
AT5G20540.1	1.2e-08	44.44	BREVIS RADIX-like 4	[more]
AT5G19420.2	2.0e-08	44.87	Regulator of chromosome condensation (RCC1) family with FYVE zinc fi...	[more]

BLAST of MELO3C008528 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659082151\|ref\|XP_008441694.1\|	4.1e-43	100.00	PREDICTED: uncharacterized protein LOC103485768 isoform X3 [Cucumis melo]	[more]
gi\|659082147\|ref\|XP_008441692.1\|	4.1e-43	100.00	PREDICTED: uncharacterized protein LOC103485768 isoform X1 [Cucumis melo]	[more]
gi\|659082153\|ref\|XP_008441696.1\|	4.1e-43	100.00	PREDICTED: uncharacterized protein LOC103485768 isoform X4 [Cucumis melo]	[more]
gi\|700206277\|gb\|KGN61396.1\|	1.9e-40	93.62	hypothetical protein Csa_2G110220 [Cucumis sativus]	[more]
gi\|296086391\|emb\|CBI31980.3\|	6.2e-15	50.53	unnamed protein product [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013591	Brevis_radix_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C008528T1	MELO3C008528T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013591	Brevis radix (BRX) domain	PFAM	PF08381	BRX	coord: 63..94 score: 5.9
IPR013591	Brevis radix (BRX) domain	PROFILE	PS51514	BRX	coord: 64..118 score: 15
None	No IPR available	PANTHER	PTHR22870	REGULATOR OF CHROMOSOME CONDENSATION	coord: 5..94 score: 4.7
None	No IPR available	PANTHER	PTHR22870:SF166	PROTEIN RCC2	coord: 5..94 score: 4.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C008528	Csa2G110220	Cucumber (Chinese Long) v2	cumeB132
MELO3C008528	Cla003364	Watermelon (97103) v1	mewmB427
MELO3C008528	ClCG11G009370	Watermelon (Charleston Gray)	mewcgB370
MELO3C008528	Bhi06G000742	Wax gourd	mewgoB455
MELO3C008528	CSPI02G08440	Wild cucumber (PI 183967)	cpimeB142
MELO3C008528	CmaCh05G008540	Cucurbita maxima (Rimu)	cmameB736
MELO3C008528	CmoCh05G008740	Cucurbita moschata (Rifu)	cmomeB726
MELO3C008528	Lsi11G009880	Bottle gourd (USVL1VR-Ls)	lsimeB117
MELO3C008528	Cp4.1LG11g07240	Cucurbita pepo (Zucchini)	cpemeB101
MELO3C008528	CsGy2G008750	Cucumber (Gy14) v2	cgybmeB124
MELO3C008528	CsaV3_2G010810	Cucumber (Chinese Long) v3	cucmeB144

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C008528	Cucumber (Gy14) v1	cgymeB447