Bhi04G000705 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi04G000705
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	LOB domain-containing protein
Location	chr4 : 21671266 .. 21671532 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATCTACGAGGTGAAGCAGCAGAAACTTTATATTTTGAGGCAAAATGTAGAATTGAAGATCCAATTTATGGATGTGTTGGAATTATTTATCAATTACAATATGAATTACACGTGGCAGAAACCCAGTTGGCGAAAACTCAAGCTGAGATTGCTTTGTTGACTTCCAATGTTCAAGAAGCCCAACCCAATGATTTTGCATTTGAGCCCATCATAGGCCCAAATAATATTGGGCTTTCCATTCCATCCCATTGGTTTCATTTCTAA

mRNA sequence

ATGCATCTACGAGGTGAAGCAGCAGAAACTTTATATTTTGAGGCAAAATGTAGAATTGAAGATCCAATTTATGGATGTGTTGGAATTATTTATCAATTACAATATGAATTACACGTGGCAGAAACCCAGTTGGCGAAAACTCAAGCTGAGATTGCTTTGTTGACTTCCAATGTTCAAGAAGCCCAACCCAATGATTTTGCATTTGAGCCCATCATAGGCCCAAATAATATTGGGCTTTCCATTCCATCCCATTGGTTTCATTTCTAA

Coding sequence (CDS)

ATGCATCTACGAGGTGAAGCAGCAGAAACTTTATATTTTGAGGCAAAATGTAGAATTGAAGATCCAATTTATGGATGTGTTGGAATTATTTATCAATTACAATATGAATTACACGTGGCAGAAACCCAGTTGGCGAAAACTCAAGCTGAGATTGCTTTGTTGACTTCCAATGTTCAAGAAGCCCAACCCAATGATTTTGCATTTGAGCCCATCATAGGCCCAAATAATATTGGGCTTTCCATTCCATCCCATTGGTTTCATTTCTAA

Protein sequence

MHLRGEAAETLYFEAKCRIEDPIYGCVGIIYQLQYELHVAETQLAKTQAEIALLTSNVQEAQPNDFAFEPIIGPNNIGLSIPSHWFHF

Homology

[Close]

BLAST of Bhi04G000705 vs. Swiss-Prot
Match: sp|Q9SHE9|LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.5e-08
Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 1   MHLRGEAAETLYFEAKCRIEDPIYGCVGIIYQLQYELHVAETQLAKTQAEIALL 55
           +H RG+A  ++ +EA  R+ DP+YGCVG I  LQ ++ V + QLA  QAE+  L
Sbjct: 63  IHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHL 116

[Close]

BLAST of Bhi04G000705 vs. Swiss-Prot
Match: sp|P59467|LBD23_ARATH (LOB domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN=LBD23 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 9.4e-08
Identity = 26/45 (57.78%), Postives = 33/45 (73.33%), Query Frame = 0


Query: 4  RGEAAETLYFEAKCRIEDPIYGCVGIIYQLQYELHVAETQLAKTQ 49
          R EA E+L FEAKCR++DP+YGCVGII       H+ +TQ+ KTQ
Sbjct: 58 RAEAVESLCFEAKCRVDDPVYGCVGII-------HLLKTQIQKTQ 95

[Close]

BLAST of Bhi04G000705 vs. Swiss-Prot
Match: sp|P59468|LBD24_ARATH (LOB domain-containing protein 24 OS=Arabidopsis thaliana OX=3702 GN=LBD24 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.6e-07
Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = 0


Query: 4  RGEAAETLYFEAKCRIEDPIYGCVGIIYQLQYELHVAETQLAKT 48
          R EA E+L FEAKCR++DP+YGCVGII       H+ +TQ+ KT
Sbjct: 58 RAEAVESLCFEAKCRVDDPVYGCVGII-------HLLKTQIQKT 94

[Close]

BLAST of Bhi04G000705 vs. Swiss-Prot
Match: sp|Q9SA51|LBD3_ARATH (LOB domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=LBD3 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.6e-07
Identity = 28/74 (37.84%), Postives = 43/74 (58.11%), Query Frame = 0


Query: 4   RGEAAETLYFEAKCRIEDPIYGCVGIIYQLQYELHVAETQLAKTQAE-IALLTSNVQEAQ 63
           R +A +++ +EA  RI+DP+YGCVG I  L  +L   +TQLA  QAE I + T +    +
Sbjct: 68  RSDAVDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIRTLHRIHTK 127

Query: 64  PNDFAFEPIIGPNN 77
           P  +    +  P+N
Sbjct: 128 PPPYTASTVTFPSN 141

[Close]

BLAST of Bhi04G000705 vs. Swiss-Prot
Match: sp|Q8LBW3|LBD12_ARATH (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 4.7e-07
Identity = 25/51 (49.02%), Postives = 33/51 (64.71%), Query Frame = 0


Query: 1   MHLRGEAAETLYFEAKCRIEDPIYGCVGIIYQLQYELHVAETQLAKTQAEI 52
           +H R +A  +L FEA  R+ DP+YGCVG I  LQ ++   + QLA  QAEI
Sbjct: 58  VHQRADAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEI 108

[Close]

BLAST of Bhi04G000705 vs. TAIR10
Match: AT1G31320.1 (LOB domain-containing protein 4)

HSP 1 Score: 59.3 bits (142), Expect = 1.4e-09
Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 1   MHLRGEAAETLYFEAKCRIEDPIYGCVGIIYQLQYELHVAETQLAKTQAEIALL 55
           +H RG+A  ++ +EA  R+ DP+YGCVG I  LQ ++ V + QLA  QAE+  L
Sbjct: 63  IHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHL 116

[Close]

BLAST of Bhi04G000705 vs. TAIR10
Match: AT3G26620.1 (LOB domain-containing protein 23)

HSP 1 Score: 57.4 bits (137), Expect = 5.2e-09
Identity = 26/45 (57.78%), Postives = 33/45 (73.33%), Query Frame = 0


Query: 4  RGEAAETLYFEAKCRIEDPIYGCVGIIYQLQYELHVAETQLAKTQ 49
          R EA E+L FEAKCR++DP+YGCVGII       H+ +TQ+ KTQ
Sbjct: 58 RAEAVESLCFEAKCRVDDPVYGCVGII-------HLLKTQIQKTQ 95

[Close]

BLAST of Bhi04G000705 vs. TAIR10
Match: AT1G16530.1 (ASYMMETRIC LEAVES 2-like 9)

HSP 1 Score: 55.5 bits (132), Expect = 2.0e-08
Identity = 28/74 (37.84%), Postives = 43/74 (58.11%), Query Frame = 0


Query: 4   RGEAAETLYFEAKCRIEDPIYGCVGIIYQLQYELHVAETQLAKTQAE-IALLTSNVQEAQ 63
           R +A +++ +EA  RI+DP+YGCVG I  L  +L   +TQLA  QAE I + T +    +
Sbjct: 68  RSDAVDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIRTLHRIHTK 127

Query: 64  PNDFAFEPIIGPNN 77
           P  +    +  P+N
Sbjct: 128 PPPYTASTVTFPSN 141

[Close]

BLAST of Bhi04G000705 vs. TAIR10
Match: AT3G26660.1 (LOB domain-containing protein 24)

HSP 1 Score: 55.5 bits (132), Expect = 2.0e-08
Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = 0


Query: 4  RGEAAETLYFEAKCRIEDPIYGCVGIIYQLQYELHVAETQLAKT 48
          R EA E+L FEAKCR++DP+YGCVGII       H+ +TQ+ KT
Sbjct: 58 RAEAVESLCFEAKCRVDDPVYGCVGII-------HLLKTQIQKT 94

[Close]

BLAST of Bhi04G000705 vs. TAIR10
Match: AT2G30130.1 (Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 55.1 bits (131), Expect = 2.6e-08
Identity = 25/51 (49.02%), Postives = 33/51 (64.71%), Query Frame = 0


Query: 1   MHLRGEAAETLYFEAKCRIEDPIYGCVGIIYQLQYELHVAETQLAKTQAEI 52
           +H R +A  +L FEA  R+ DP+YGCVG I  LQ ++   + QLA  QAEI
Sbjct: 58  VHQRADAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEI 108

[Close]

BLAST of Bhi04G000705 vs. TrEMBL
Match: tr|A0A0A0L9N7|A0A0A0L9N7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G180300 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.7e-28
Identity = 69/92 (75.00%), Postives = 76/92 (82.61%), Query Frame = 0


Query: 2   HLRGEAAETLYFEAKCRIEDPIYGCVGIIYQLQYELHVAETQLAKTQAEIALLTSNVQE- 61
           HLR EAAETL FEAKCRIEDP+YGCVGII QLQ+ELHVAETQLAKT+AEIA + SNVQE 
Sbjct: 56  HLRAEAAETLIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQEQ 115

Query: 62  AQPNDFAFEPIIGPNN-----IGLSIPSHWFH 88
            QP DFAFEPI GPN+     IGLS P+H F+
Sbjct: 116 PQPQDFAFEPIQGPNSVGFSQIGLSTPAHCFN 147

[Close]

BLAST of Bhi04G000705 vs. TrEMBL
Match: tr|A0A1S3AY36|A0A1S3AY36_CUCME (LOB domain-containing protein 24-like OS=Cucumis melo OX=3656 GN=LOC103484045 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 4.6e-28
Identity = 68/93 (73.12%), Postives = 77/93 (82.80%), Query Frame = 0


Query: 2   HLRGEAAETLYFEAKCRIEDPIYGCVGIIYQLQYELHVAETQLAKTQAEIALLTSNVQEA 61
           HLRGEAAETL FEAKCRIEDP+YGCVGII QLQ++LHVAETQLAKT+AEIA + SNVQE 
Sbjct: 56  HLRGEAAETLIFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIACVASNVQEE 115

Query: 62  QP--NDFAFEPIIGPNN-----IGLSIPSHWFH 88
           QP   DFAF+PI GPN+     IGLS P+H F+
Sbjct: 116 QPQLQDFAFQPIQGPNSVGFSQIGLSSPAHCFN 148

[Close]

BLAST of Bhi04G000705 vs. TrEMBL
Match: tr|A0A0A0LLX6|A0A0A0LLX6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G373510 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.8e-27
Identity = 67/86 (77.91%), Postives = 72/86 (83.72%), Query Frame = 0


Query: 1   MHLRGEAAETLYFEAKCRIEDPIYGCVGIIYQLQYELHVAETQLAKTQAEIALLTSNVQE 60
           M LRGEAAETLYFEAKCRIEDPIYGCVGII QLQYELHVAETQLAKT+AEIALL SN Q+
Sbjct: 55  MDLRGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASNRQQ 114

Query: 61  AQPNDFAF-EPIIGPNNIGLSIPSHW 86
           AQ  DF F +P  GP   GLS P+H+
Sbjct: 115 AQHEDFPFDDPSSGPIFTGLSTPAHF 140

[Close]

BLAST of Bhi04G000705 vs. TrEMBL
Match: tr|A0A251TXC4|A0A251TXC4_HELAN (Putative LOB domain-containing protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr09g0264251 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.7e-17
Identity = 43/91 (47.25%), Postives = 66/91 (72.53%), Query Frame = 0


Query: 1   MHLRGEAAETLYFEAKCRIEDPIYGCVGIIYQLQYELHVAETQLAKTQAEIALLTSNVQE 60
           +HLR +A ++LY+EAKCRI+DP+YGCVGII  L  ++ +A++QLAK QAE++ L +N+  
Sbjct: 64  VHLRADAVDSLYYEAKCRIQDPVYGCVGIISSLHQQIQIAQSQLAKAQAELSFLDANLAA 123

Query: 61  AQPNDFAFEPIIGPNNI---GLSIP-SHWFH 88
           A+P     EP++ PN +   GL  P ++WF+
Sbjct: 124 AEPTPNHSEPLVQPNGVVDHGLDDPLNNWFY 154

[Close]

BLAST of Bhi04G000705 vs. TrEMBL
Match: tr|A0A251SAI2|A0A251SAI2_HELAN (Putative LOB domain-containing protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr15g0487801 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.8e-16
Identity = 43/91 (47.25%), Postives = 64/91 (70.33%), Query Frame = 0


Query: 1   MHLRGEAAETLYFEAKCRIEDPIYGCVGIIYQLQYELHVAETQLAKTQAEIALLTSNVQE 60
           +HLR +A ++LY+EAKCRI+DP+YGCVGII  L  ++ +A++QLAK QAE++ L +N+  
Sbjct: 64  VHLRADAVDSLYYEAKCRIQDPVYGCVGIISSLHQQIQIAQSQLAKAQAELSFLDANLAA 123

Query: 61  AQPNDFAFEPIIGPNNI---GLSIP-SHWFH 88
           A+P     EP++ PN     GL  P + WF+
Sbjct: 124 AEPTPSHSEPLVQPNGAVDHGLDDPLNTWFY 154

[Close]

BLAST of Bhi04G000705 vs. NCBI nr
Match: XP_023522202.1 (LOB domain-containing protein 24-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 141.7 bits (356), Expect = 1.2e-30
Identity = 68/92 (73.91%), Postives = 78/92 (84.78%), Query Frame = 0


Query: 1   MHLRGEAAETLYFEAKCRIEDPIYGCVGIIYQLQYELHVAETQLAKTQAEIALLTSNVQE 60
           +HLR EAAETL+FEAKCRIEDP+YGCVGII QLQ++LHVAETQLAKT+AEIA L SN+QE
Sbjct: 55  LHLRPEAAETLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFLASNLQE 114

Query: 61  AQPNDFAFEPIIGPN-----NIGLSIPSHWFH 88
           AQP DFA +PI GPN      IGLS P+HWF+
Sbjct: 115 AQPQDFAVQPIQGPNTIGFSQIGLSTPAHWFN 146

[Close]

BLAST of Bhi04G000705 vs. NCBI nr
Match: XP_022923144.1 (LOB domain-containing protein 24-like [Cucurbita moschata])

HSP 1 Score: 140.2 bits (352), Expect = 3.4e-30
Identity = 67/92 (72.83%), Postives = 79/92 (85.87%), Query Frame = 0


Query: 1   MHLRGEAAETLYFEAKCRIEDPIYGCVGIIYQLQYELHVAETQLAKTQAEIALLTSNVQE 60
           +HLR EAAE+L+FEAKCRIEDP+YGCVGII QLQ++LHVAETQLAKT+AEIA L SN+QE
Sbjct: 55  LHLRPEAAESLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFLASNLQE 114

Query: 61  AQPNDFAFEPIIGPN-----NIGLSIPSHWFH 88
           AQP+DFA +PI GPN      IGLS P+HWF+
Sbjct: 115 AQPHDFAAQPIQGPNTIGFSQIGLSTPAHWFN 146

[Close]

BLAST of Bhi04G000705 vs. NCBI nr
Match: XP_022985104.1 (LOB domain-containing protein 24-like [Cucurbita maxima])

HSP 1 Score: 138.7 bits (348), Expect = 9.8e-30
Identity = 69/93 (74.19%), Postives = 78/93 (83.87%), Query Frame = 0


Query: 1   MHLRGEAAETLYFEAKCRIEDPIYGCVGIIYQLQYELHVAETQLAKTQAEIALLTSNV-Q 60
           +HLR EAAETL+FEAKCRIEDP+YGCVGII QLQ++LHVAETQLAKT+AEIA L SN+ Q
Sbjct: 55  VHLRAEAAETLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFLASNLHQ 114

Query: 61  EAQPNDFAFEPIIGPN-----NIGLSIPSHWFH 88
           EAQP DFA EPI GPN      IGLS P+HWF+
Sbjct: 115 EAQPQDFAVEPIQGPNTIGFSQIGLSTPAHWFN 147

[Close]

BLAST of Bhi04G000705 vs. NCBI nr
Match: XP_004140854.1 (PREDICTED: LOB domain-containing protein 24-like [Cucumis sativus] >KGN57342.1 hypothetical protein Csa_3G180300 [Cucumis sativus])

HSP 1 Score: 133.3 bits (334), Expect = 4.1e-28
Identity = 69/92 (75.00%), Postives = 76/92 (82.61%), Query Frame = 0


Query: 2   HLRGEAAETLYFEAKCRIEDPIYGCVGIIYQLQYELHVAETQLAKTQAEIALLTSNVQE- 61
           HLR EAAETL FEAKCRIEDP+YGCVGII QLQ+ELHVAETQLAKT+AEIA + SNVQE 
Sbjct: 56  HLRAEAAETLIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQEQ 115

Query: 62  AQPNDFAFEPIIGPNN-----IGLSIPSHWFH 88
            QP DFAFEPI GPN+     IGLS P+H F+
Sbjct: 116 PQPQDFAFEPIQGPNSVGFSQIGLSTPAHCFN 147

[Close]

BLAST of Bhi04G000705 vs. NCBI nr
Match: XP_008439169.1 (PREDICTED: LOB domain-containing protein 24-like [Cucumis melo])

HSP 1 Score: 132.5 bits (332), Expect = 7.0e-28
Identity = 68/93 (73.12%), Postives = 77/93 (82.80%), Query Frame = 0


Query: 2   HLRGEAAETLYFEAKCRIEDPIYGCVGIIYQLQYELHVAETQLAKTQAEIALLTSNVQEA 61
           HLRGEAAETL FEAKCRIEDP+YGCVGII QLQ++LHVAETQLAKT+AEIA + SNVQE 
Sbjct: 56  HLRGEAAETLIFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIACVASNVQEE 115

Query: 62  QP--NDFAFEPIIGPNN-----IGLSIPSHWFH 88
           QP   DFAF+PI GPN+     IGLS P+H F+
Sbjct: 116 QPQLQDFAFQPIQGPNSVGFSQIGLSSPAHCFN 148

The following BLAST results are available for this feature:

BLAST of Bhi04G000705 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SHE9\|LBD4_ARATH	2.5e-08	46.30	LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=...	[more]
sp\|P59467\|LBD23_ARATH	9.4e-08	57.78	LOB domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN=LBD23 PE=1 S...	[more]
sp\|P59468\|LBD24_ARATH	3.6e-07	56.82	LOB domain-containing protein 24 OS=Arabidopsis thaliana OX=3702 GN=LBD24 PE=2 S...	[more]
sp\|Q9SA51\|LBD3_ARATH	3.6e-07	37.84	LOB domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=LBD3 PE=2 SV=...	[more]
sp\|Q8LBW3\|LBD12_ARATH	4.7e-07	49.02	LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 S...	[more]

BLAST of Bhi04G000705 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G31320.1	1.4e-09	46.30	LOB domain-containing protein 4	[more]
AT3G26620.1	5.2e-09	57.78	LOB domain-containing protein 23	[more]
AT1G16530.1	2.0e-08	37.84	ASYMMETRIC LEAVES 2-like 9	[more]
AT3G26660.1	2.0e-08	56.82	LOB domain-containing protein 24	[more]
AT2G30130.1	2.6e-08	49.02	Lateral organ boundaries (LOB) domain family protein	[more]

BLAST of Bhi04G000705 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L9N7\|A0A0A0L9N7_CUCSA	2.7e-28	75.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G180300 PE=4 SV=1	[more]
tr\|A0A1S3AY36\|A0A1S3AY36_CUCME	4.6e-28	73.12	LOB domain-containing protein 24-like OS=Cucumis melo OX=3656 GN=LOC103484045 PE...	[more]
tr\|A0A0A0LLX6\|A0A0A0LLX6_CUCSA	1.8e-27	77.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G373510 PE=4 SV=1	[more]
tr\|A0A251TXC4\|A0A251TXC4_HELAN	3.7e-17	47.25	Putative LOB domain-containing protein OS=Helianthus annuus OX=4232 GN=HannXRQ_C...	[more]
tr\|A0A251SAI2\|A0A251SAI2_HELAN	1.8e-16	47.25	Putative LOB domain-containing protein OS=Helianthus annuus OX=4232 GN=HannXRQ_C...	[more]

BLAST of Bhi04G000705 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023522202.1	1.2e-30	73.91	LOB domain-containing protein 24-like [Cucurbita pepo subsp. pepo]	[more]
XP_022923144.1	3.4e-30	72.83	LOB domain-containing protein 24-like [Cucurbita moschata]	[more]
XP_022985104.1	9.8e-30	74.19	LOB domain-containing protein 24-like [Cucurbita maxima]	[more]
XP_004140854.1	4.1e-28	75.00	PREDICTED: LOB domain-containing protein 24-like [Cucumis sativus] >KGN57342.1 h...	[more]
XP_008439169.1	7.0e-28	73.12	PREDICTED: LOB domain-containing protein 24-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004883	LOB

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi04M000705	Bhi04M000705	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 37..57
None	No IPR available	PANTHER	PTHR31301:SF13	LOB DOMAIN-CONTAINING PROTEIN 23-RELATED	coord: 2..61
None	No IPR available	PANTHER	PTHR31301	FAMILY NOT NAMED	coord: 2..61
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 2..48 e-value: 5.9E-11 score: 42.7
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 1..51 score: 9.91

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi04G000705	Csa2G373510	Cucumber (Chinese Long) v2	cuwgoB165
Bhi04G000705	MELO3C011135	Melon (DHL92) v3.5.1	mewgoB325
Bhi04G000705	ClCG08G012180	Watermelon (Charleston Gray)	wcgwgoB627
Bhi04G000705	CSPI02G22180	Wild cucumber (PI 183967)	cpiwgoB162
Bhi04G000705	Cucsa.161230	Cucumber (Gy14) v1	cgywgoB317
Bhi04G000705	CsGy2G021930	Cucumber (Gy14) v2	cgybwgoB160
Bhi04G000705	MELO3C011135.2	Melon (DHL92) v3.6.1	medwgoB323
Bhi04G000705	CsaV3_2G030800	Cucumber (Chinese Long) v3	cucwgoB172

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi04G000705	Cucumber (Gy14) v2	cgybwgoB308
Bhi04G000705	Cucumber (Gy14) v2	cgybwgoB309
Bhi04G000705	Cucurbita maxima (Rimu)	cmawgoB0021
Bhi04G000705	Cucurbita maxima (Rimu)	cmawgoB0210
Bhi04G000705	Cucurbita maxima (Rimu)	cmawgoB0944
Bhi04G000705	Cucurbita moschata (Rifu)	cmowgoB0014
Bhi04G000705	Cucurbita moschata (Rifu)	cmowgoB0205
Bhi04G000705	Cucurbita moschata (Rifu)	cmowgoB0946
Bhi04G000705	Cucurbita pepo (Zucchini)	cpewgoB0143
Bhi04G000705	Cucurbita pepo (Zucchini)	cpewgoB0985
Bhi04G000705	Cucurbita pepo (Zucchini)	cpewgoB1043
Bhi04G000705	Wild cucumber (PI 183967)	cpiwgoB322
Bhi04G000705	Bottle gourd (USVL1VR-Ls)	lsiwgoB369
Bhi04G000705	Bottle gourd (USVL1VR-Ls)	lsiwgoB605
Bhi04G000705	Watermelon (97103) v2	wgowmbB296
Bhi04G000705	Watermelon (97103) v2	wgowmbB328
Bhi04G000705	Watermelon (97103) v1	wgowmB311
Bhi04G000705	Silver-seed gourd	carwgoB0068
Bhi04G000705	Silver-seed gourd	carwgoB0751
Bhi04G000705	Silver-seed gourd	carwgoB1147