Cucsa.161230 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.161230
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	LOB domain-containing protein, putative
Location	scaffold01144 : 1144332 .. 1144875 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCCAAGTCGTTGTGCAGCTTGTAAGTATTTAAGAAGAAGATGTTCATCAAATTGCATTTTCTCTCCTTATTTTCCCTCAAACAATCCTCAAAGATTCGCCATTGTTCATAGAATCTATGGTGCTAGTAATGTTGCTAAATTCCTTCAAGTAAGTACATTGTTTTCATTTATTGAACAATTCATTAAATTATAATCTAAATTAAAAATCTTAGACTCTCTTTTGGGTTAATTTAATTTAATTTAATCAGCAAGTTCCTATGGATCTACGAGGTGAAGCAGCAGAGACTTTGTATTTTGAAGCAAAATGTAGAATTGAAGATCCAATTTACGGATGTGTTGGGATTATTTCCCAATTACAATATGAATTACACGTGGCAGAAACCCAGTTGGCCAAAACTCGAGCTGAGATTGCTCTCCTCGCTTCCAACCGTCAACAAGCCCAACACGAAGACTTTCCATTTGATGACCCCAGCTCAGGCCCAATTTTTACTGGGCTTTCCACTCCAGCCCACTTTTCTGAGCAATTGTTTCGTGCTTAG

mRNA sequence

ATGATTCCAAGTCGTTGTGCAGCTTGTAAGTATTTAAGAAGAAGATGTTCATCAAATTGCATTTTCTCTCCTTATTTTCCCTCAAACAATCCTCAAAGATTCGCCATTGTTCATAGAATCTATGGTGCTAGTAATGTTGCTAAATTCCTTCAACAAGTTCCTATGGATCTACGAGGTGAAGCAGCAGAGACTTTGTATTTTGAAGCAAAATGTAGAATTGAAGATCCAATTTACGGATGTGTTGGGATTATTTCCCAATTACAATATGAATTACACGTGGCAGAAACCCAGTTGGCCAAAACTCGAGCTGAGATTGCTCTCCTCGCTTCCAACCGTCAACAAGCCCAACACGAAGACTTTCCATTTGATGACCCCAGCTCAGGCCCAATTTTTACTGGGCTTTCCACTCCAGCCCACTTTTCTGAGCAATTGTTTCGTGCTTAG

Coding sequence (CDS)

ATGATTCCAAGTCGTTGTGCAGCTTGTAAGTATTTAAGAAGAAGATGTTCATCAAATTGCATTTTCTCTCCTTATTTTCCCTCAAACAATCCTCAAAGATTCGCCATTGTTCATAGAATCTATGGTGCTAGTAATGTTGCTAAATTCCTTCAACAAGTTCCTATGGATCTACGAGGTGAAGCAGCAGAGACTTTGTATTTTGAAGCAAAATGTAGAATTGAAGATCCAATTTACGGATGTGTTGGGATTATTTCCCAATTACAATATGAATTACACGTGGCAGAAACCCAGTTGGCCAAAACTCGAGCTGAGATTGCTCTCCTCGCTTCCAACCGTCAACAAGCCCAACACGAAGACTTTCCATTTGATGACCCCAGCTCAGGCCCAATTTTTACTGGGCTTTCCACTCCAGCCCACTTTTCTGAGCAATTGTTTCGTGCTTAG

Protein sequence

MIPSRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASNRQQAQHEDFPFDDPSSGPIFTGLSTPAHFSEQLFRA*

Homology

[Close]

BLAST of Cucsa.161230 vs. Swiss-Prot
Match: LBD24_ARATH (LOB domain-containing protein 24 OS=Arabidopsis thaliana GN=LBD24 PE=2 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 3.4e-39
Identity = 73/120 (60.83%), Postives = 92/120 (76.67%), Query Frame = 1


Query: 1   MIPSRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGE 60
           M P RCAACKYLRRRC  +C+FSPYFP N+PQ+FA VHRIYGA NV+K LQQ+P   R E
Sbjct: 1   MNPKRCAACKYLRRRCPKDCVFSPYFPPNDPQKFACVHRIYGAGNVSKMLQQLPDQTRAE 60

Query: 61  AAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASNRQQAQHEDF 120
           A E+L FEAKCR++DP+YGCVGII  L+ ++   + +LAKT+AEIA+  +   Q Q+ DF
Sbjct: 61  AVESLCFEAKCRVDDPVYGCVGIIHLLKTQIQKTQNELAKTQAEIAVAQTKLSQTQNSDF 120

[Close]

BLAST of Cucsa.161230 vs. Swiss-Prot
Match: LBD23_ARATH (LOB domain-containing protein 23 OS=Arabidopsis thaliana GN=LBD23 PE=2 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 3.8e-38
Identity = 72/120 (60.00%), Postives = 90/120 (75.00%), Query Frame = 1


Query: 1   MIPSRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGE 60
           M P RCAACKYLRRRC  +C+FSPYFP N+PQ+FA VHRIYGA NV+K LQQ+P   R E
Sbjct: 1   MNPKRCAACKYLRRRCPKDCVFSPYFPPNDPQKFACVHRIYGAGNVSKMLQQLPDQTRAE 60

Query: 61  AAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASNRQQAQHEDF 120
           A E+L FEAKCR++DP+YGCVGII  L+ ++   + +LAKT+AEIA+  +   Q    DF
Sbjct: 61  AVESLCFEAKCRVDDPVYGCVGIIHLLKTQIQKTQNELAKTQAEIAVAQTKLSQTHISDF 120

[Close]

BLAST of Cucsa.161230 vs. Swiss-Prot
Match: LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 7.7e-31
Identity = 65/129 (50.39%), Postives = 89/129 (68.99%), Query Frame = 1


Query: 4   SRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGEAAE 63
           S CAACK LRRRC+ +C+FSPYFP++ PQ+FA VHR++GASNV K LQ++P+  RG+A  
Sbjct: 12  SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVS 71

Query: 64  TLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASNRQQAQHEDFPF- 123
           ++ +EA  R+ DP+YGCVG IS LQ ++ V + QLA  +AE+  L    +  Q  +FP  
Sbjct: 72  SMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHL----RVRQSTNFPGH 131

Query: 124 ----DDPSS 128
               D PSS
Sbjct: 132 GLCPDSPSS 136

[Close]

BLAST of Cucsa.161230 vs. Swiss-Prot
Match: LBD12_ARATH (LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2)

HSP 1 Score: 129.8 bits (325), Expect = 2.5e-29
Identity = 59/123 (47.97%), Postives = 85/123 (69.11%), Query Frame = 1


Query: 4   SRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGEAAE 63
           S CA+CK LRRRC+ +CIF+PYFP ++P +FAIVH+++GASNV+K LQ++P+  R +A  
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 64  TLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASNRQ---QAQHEDF 123
           +L FEA  R+ DP+YGCVG IS LQ ++   + QLA  +AEI  +    +   Q+ H+  
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPTLQSHHQVL 126

[Close]

BLAST of Cucsa.161230 vs. Swiss-Prot
Match: LBD36_ARATH (LOB domain-containing protein 36 OS=Arabidopsis thaliana GN=LBD36 PE=2 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 3.9e-27
Identity = 51/103 (49.51%), Postives = 75/103 (72.82%), Query Frame = 1


Query: 4   SRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGEAAE 63
           S CAACK+LRR+C+  C+F+PYFP + PQ+FA VH+++GASNVAK L ++  + R +A  
Sbjct: 6   SPCAACKFLRRKCTQECVFAPYFPPDQPQKFAFVHKVFGASNVAKLLNELASNQREDAVN 65

Query: 64  TLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIA 107
           +L++EA+ R+ DP+YGCVG+IS LQ+ L      L   + E+A
Sbjct: 66  SLFYEAEARLRDPVYGCVGLISILQHRLKQVNHDLENAKKELA 108

[Close]

BLAST of Cucsa.161230 vs. TrEMBL
Match: A0A0A0LLX6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G373510 PE=4 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 1.8e-79
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1


Query: 1   MIPSRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGE 60
           MIPSRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGE
Sbjct: 1   MIPSRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGE 60

Query: 61  AAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASNRQQAQHEDF 120
           AAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASNRQQAQHEDF
Sbjct: 61  AAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASNRQQAQHEDF 120

Query: 121 PFDDPSSGPIFTGLSTPAHFSEQLFRA 148
           PFDDPSSGPIFTGLSTPAHFSEQLFRA
Sbjct: 121 PFDDPSSGPIFTGLSTPAHFSEQLFRA 147

[Close]

BLAST of Cucsa.161230 vs. TrEMBL
Match: A0A0A0L9N7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G180300 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 8.5e-53
Identity = 111/151 (73.51%), Postives = 121/151 (80.13%), Query Frame = 1


Query: 1   MIPSRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGE 60
           MI  RCAACKYLRRRC S+CIFSP+FPSNNPQRF IVHRIYGASNVAKFL Q+P  LR E
Sbjct: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAE 60

Query: 61  AAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASN-RQQAQHED 120
           AAETL FEAKCRIEDP+YGCVGIISQLQ+ELHVAETQLAKTRAEIA +ASN ++Q Q +D
Sbjct: 61  AAETLIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQEQPQPQD 120

Query: 121 FPFDDPSSGPIFT-----GLSTPAHFSEQLF 146
           F F +P  GP        GLSTPAH     F
Sbjct: 121 FAF-EPIQGPNSVGFSQIGLSTPAHCFNSTF 150

[Close]

BLAST of Cucsa.161230 vs. TrEMBL
Match: A0A0D2RZL8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G123600 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.7e-40
Identity = 79/121 (65.29%), Postives = 98/121 (80.99%), Query Frame = 1


Query: 1   MIPSRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGE 60
           M   RCAAC+YLRRRC+ +CI SPYFPSNNPQRFA VHRIYGASNV K LQ++P  LR E
Sbjct: 1   MSSGRCAACRYLRRRCTQDCILSPYFPSNNPQRFASVHRIYGASNVTKLLQRLPTHLRAE 60

Query: 61  AAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASNRQQAQHEDF 120
           AA++LYFEA+CR+EDP+YGCVG+I  LQ ++H AE+QL KT+AEIA++ S  Q  + + F
Sbjct: 61  AADSLYFEAQCRLEDPVYGCVGLIFLLQQQIHSAESQLIKTQAEIAVMKSQTQHPRTQPF 120

Query: 121 P 122
           P
Sbjct: 121 P 121

[Close]

BLAST of Cucsa.161230 vs. TrEMBL
Match: A0A061FP58_THECC (LOB domain-containing protein 23 OS=Theobroma cacao GN=TCM_035123 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 3.7e-40
Identity = 82/117 (70.09%), Postives = 97/117 (82.91%), Query Frame = 1


Query: 1   MIPSRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGE 60
           M   RCAAC+YLRRRC  +CIFSPYFPSNNPQRF  +HRIYGASNVAK LQQ+P  LR E
Sbjct: 1   MNSGRCAACRYLRRRCPPDCIFSPYFPSNNPQRFVSIHRIYGASNVAKLLQQLPTHLRAE 60

Query: 61  AAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASNRQQAQH 118
           AA++LYFEA+CR+EDP+YGCVG+I  LQ ++H A +QLAKT+AEIA+L S   QAQH
Sbjct: 61  AADSLYFEAQCRVEDPVYGCVGLIFLLQQQIHNAVSQLAKTQAEIAVLKS---QAQH 114

[Close]

BLAST of Cucsa.161230 vs. TrEMBL
Match: A0A0B0PT25_GOSAR (LOB domain-containing 24-like protein OS=Gossypium arboreum GN=F383_07421 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 3.7e-40
Identity = 79/120 (65.83%), Postives = 97/120 (80.83%), Query Frame = 1


Query: 1   MIPSRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGE 60
           M   RCAAC+YLRRRC+ +CI SPYFPSNNPQRFA VHRIYGASNV K LQ++P  LR E
Sbjct: 1   MSSGRCAACRYLRRRCTQDCILSPYFPSNNPQRFASVHRIYGASNVTKLLQRLPTHLRSE 60

Query: 61  AAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASNRQQAQHEDF 120
           AA++LYFEA+CR+EDP+YGCVG+I  LQ ++H AE+QL KT+AEIA++ S  Q  Q + F
Sbjct: 61  AADSLYFEAQCRLEDPVYGCVGLIFLLQQQIHSAESQLIKTQAEIAVMKSQTQHPQTQPF 120

[Close]

BLAST of Cucsa.161230 vs. TAIR10
Match: AT3G26660.1 (AT3G26660.1 LOB domain-containing protein 24)

HSP 1 Score: 162.5 bits (410), Expect = 1.9e-40
Identity = 73/120 (60.83%), Postives = 92/120 (76.67%), Query Frame = 1


Query: 1   MIPSRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGE 60
           M P RCAACKYLRRRC  +C+FSPYFP N+PQ+FA VHRIYGA NV+K LQQ+P   R E
Sbjct: 1   MNPKRCAACKYLRRRCPKDCVFSPYFPPNDPQKFACVHRIYGAGNVSKMLQQLPDQTRAE 60

Query: 61  AAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASNRQQAQHEDF 120
           A E+L FEAKCR++DP+YGCVGII  L+ ++   + +LAKT+AEIA+  +   Q Q+ DF
Sbjct: 61  AVESLCFEAKCRVDDPVYGCVGIIHLLKTQIQKTQNELAKTQAEIAVAQTKLSQTQNSDF 120

[Close]

BLAST of Cucsa.161230 vs. TAIR10
Match: AT3G26620.1 (AT3G26620.1 LOB domain-containing protein 23)

HSP 1 Score: 159.1 bits (401), Expect = 2.1e-39
Identity = 72/120 (60.00%), Postives = 90/120 (75.00%), Query Frame = 1


Query: 1   MIPSRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGE 60
           M P RCAACKYLRRRC  +C+FSPYFP N+PQ+FA VHRIYGA NV+K LQQ+P   R E
Sbjct: 1   MNPKRCAACKYLRRRCPKDCVFSPYFPPNDPQKFACVHRIYGAGNVSKMLQQLPDQTRAE 60

Query: 61  AAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASNRQQAQHEDF 120
           A E+L FEAKCR++DP+YGCVGII  L+ ++   + +LAKT+AEIA+  +   Q    DF
Sbjct: 61  AVESLCFEAKCRVDDPVYGCVGIIHLLKTQIQKTQNELAKTQAEIAVAQTKLSQTHISDF 120

[Close]

BLAST of Cucsa.161230 vs. TAIR10
Match: AT1G31320.1 (AT1G31320.1 LOB domain-containing protein 4)

HSP 1 Score: 134.8 bits (338), Expect = 4.3e-32
Identity = 65/129 (50.39%), Postives = 89/129 (68.99%), Query Frame = 1


Query: 4   SRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGEAAE 63
           S CAACK LRRRC+ +C+FSPYFP++ PQ+FA VHR++GASNV K LQ++P+  RG+A  
Sbjct: 12  SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVS 71

Query: 64  TLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASNRQQAQHEDFPF- 123
           ++ +EA  R+ DP+YGCVG IS LQ ++ V + QLA  +AE+  L    +  Q  +FP  
Sbjct: 72  SMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHL----RVRQSTNFPGH 131

Query: 124 ----DDPSS 128
               D PSS
Sbjct: 132 GLCPDSPSS 136

[Close]

BLAST of Cucsa.161230 vs. TAIR10
Match: AT2G30130.1 (AT2G30130.1 Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 129.8 bits (325), Expect = 1.4e-30
Identity = 59/123 (47.97%), Postives = 85/123 (69.11%), Query Frame = 1


Query: 4   SRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGEAAE 63
           S CA+CK LRRRC+ +CIF+PYFP ++P +FAIVH+++GASNV+K LQ++P+  R +A  
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 64  TLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASNRQ---QAQHEDF 123
           +L FEA  R+ DP+YGCVG IS LQ ++   + QLA  +AEI  +    +   Q+ H+  
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPTLQSHHQVL 126

[Close]

BLAST of Cucsa.161230 vs. TAIR10
Match: AT5G66870.1 (AT5G66870.1 ASYMMETRIC LEAVES 2-like 1)

HSP 1 Score: 122.5 bits (306), Expect = 2.2e-28
Identity = 51/103 (49.51%), Postives = 75/103 (72.82%), Query Frame = 1


Query: 4   SRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGEAAE 63
           S CAACK+LRR+C+  C+F+PYFP + PQ+FA VH+++GASNVAK L ++  + R +A  
Sbjct: 6   SPCAACKFLRRKCTQECVFAPYFPPDQPQKFAFVHKVFGASNVAKLLNELASNQREDAVN 65

Query: 64  TLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIA 107
           +L++EA+ R+ DP+YGCVG+IS LQ+ L      L   + E+A
Sbjct: 66  SLFYEAEARLRDPVYGCVGLISILQHRLKQVNHDLENAKKELA 108

[Close]

BLAST of Cucsa.161230 vs. NCBI nr
Match: gi|700207689|gb|KGN62808.1| (hypothetical protein Csa_2G373510 [Cucumis sativus])

HSP 1 Score: 303.1 bits (775), Expect = 2.6e-79
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1


Query: 1   MIPSRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGE 60
           MIPSRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGE
Sbjct: 1   MIPSRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGE 60

Query: 61  AAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASNRQQAQHEDF 120
           AAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASNRQQAQHEDF
Sbjct: 61  AAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASNRQQAQHEDF 120

Query: 121 PFDDPSSGPIFTGLSTPAHFSEQLFRA 148
           PFDDPSSGPIFTGLSTPAHFSEQLFRA
Sbjct: 121 PFDDPSSGPIFTGLSTPAHFSEQLFRA 147

[Close]

BLAST of Cucsa.161230 vs. NCBI nr
Match: gi|659089563|ref|XP_008445577.1| (PREDICTED: LOB domain-containing protein 24-like [Cucumis melo])

HSP 1 Score: 266.5 bits (680), Expect = 2.7e-68
Identity = 132/147 (89.80%), Postives = 136/147 (92.52%), Query Frame = 1


Query: 1   MIPSRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGE 60
           MIP+RCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMD+RGE
Sbjct: 1   MIPNRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDVRGE 60

Query: 61  AAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASNRQQAQHE-- 120
           AAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRA+IALLASN QQAQHE  
Sbjct: 61  AAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAQIALLASNLQQAQHEAQ 120

Query: 121 DFPFDDPSSGPIFTGLSTPAHFSEQLF 146
            F FDDPSSGPI  GLSTPAH+    F
Sbjct: 121 AFAFDDPSSGPICIGLSTPAHWLHSSF 147

[Close]

BLAST of Cucsa.161230 vs. NCBI nr
Match: gi|449446189|ref|XP_004140854.1| (PREDICTED: LOB domain-containing protein 24-like [Cucumis sativus])

HSP 1 Score: 214.5 bits (545), Expect = 1.2e-52
Identity = 111/151 (73.51%), Postives = 121/151 (80.13%), Query Frame = 1


Query: 1   MIPSRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGE 60
           MI  RCAACKYLRRRC S+CIFSP+FPSNNPQRF IVHRIYGASNVAKFL Q+P  LR E
Sbjct: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAE 60

Query: 61  AAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASN-RQQAQHED 120
           AAETL FEAKCRIEDP+YGCVGIISQLQ+ELHVAETQLAKTRAEIA +ASN ++Q Q +D
Sbjct: 61  AAETLIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQEQPQPQD 120

Query: 121 FPFDDPSSGPIFT-----GLSTPAHFSEQLF 146
           F F +P  GP        GLSTPAH     F
Sbjct: 121 FAF-EPIQGPNSVGFSQIGLSTPAHCFNSTF 150

[Close]

BLAST of Cucsa.161230 vs. NCBI nr
Match: gi|659077366|ref|XP_008439169.1| (PREDICTED: LOB domain-containing protein 24-like [Cucumis melo])

HSP 1 Score: 212.2 bits (539), Expect = 6.0e-52
Identity = 111/153 (72.55%), Postives = 122/153 (79.74%), Query Frame = 1


Query: 1   MIPSRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGE 60
           MI  RCAACKYLRRRC S+CIFSP+FPSNNPQRF IVHRIYGASNVAKFL Q+P  LRGE
Sbjct: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRGE 60

Query: 61  AAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASN--RQQAQHE 120
           AAETL FEAKCRIEDP+YGCVGIISQLQ++LHVAETQLAKTRAEIA +ASN   +Q Q +
Sbjct: 61  AAETLIFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIACVASNVQEEQPQLQ 120

Query: 121 DFPFDDPSSGPIFT-----GLSTPAH-FSEQLF 146
           DF F  P  GP        GLS+PAH F+   F
Sbjct: 121 DFAF-QPIQGPNSVGFSQIGLSSPAHCFNSSFF 152

[Close]

BLAST of Cucsa.161230 vs. NCBI nr
Match: gi|802750384|ref|XP_012087781.1| (PREDICTED: LOB domain-containing protein 24-like [Jatropha curcas])

HSP 1 Score: 177.2 bits (448), Expect = 2.2e-41
Identity = 84/106 (79.25%), Postives = 94/106 (88.68%), Query Frame = 1


Query: 5   RCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGEAAET 64
           RCAACKYLRRRCS +CIFSPYFPSNNPQRFA VH+IYGASNVAK LQQVP  LR  AAE+
Sbjct: 5   RCAACKYLRRRCSLDCIFSPYFPSNNPQRFAYVHKIYGASNVAKILQQVPDHLRASAAES 64

Query: 65  LYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLAS 111
           LY+EAK RIEDP+YGCVGIIS L  ++H+AE QLAKT+AEIA+LAS
Sbjct: 65  LYYEAKYRIEDPVYGCVGIISLLHQQIHIAENQLAKTKAEIAVLAS 110

The following BLAST results are available for this feature:

BLAST of Cucsa.161230 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LBD24_ARATH	3.4e-39	60.83	LOB domain-containing protein 24 OS=Arabidopsis thaliana GN=LBD24 PE=2 SV=1	[more]
LBD23_ARATH	3.8e-38	60.00	LOB domain-containing protein 23 OS=Arabidopsis thaliana GN=LBD23 PE=2 SV=1	[more]
LBD4_ARATH	7.7e-31	50.39	LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1	[more]
LBD12_ARATH	2.5e-29	47.97	LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2	[more]
LBD36_ARATH	3.9e-27	49.51	LOB domain-containing protein 36 OS=Arabidopsis thaliana GN=LBD36 PE=2 SV=1	[more]

BLAST of Cucsa.161230 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLX6_CUCSA	1.8e-79	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G373510 PE=4 SV=1	[more]
A0A0A0L9N7_CUCSA	8.5e-53	73.51	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G180300 PE=4 SV=1	[more]
A0A0D2RZL8_GOSRA	1.7e-40	65.29	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G123600 PE=4 SV=1	[more]
A0A061FP58_THECC	3.7e-40	70.09	LOB domain-containing protein 23 OS=Theobroma cacao GN=TCM_035123 PE=4 SV=1	[more]
A0A0B0PT25_GOSAR	3.7e-40	65.83	LOB domain-containing 24-like protein OS=Gossypium arboreum GN=F383_07421 PE=4 S...	[more]

BLAST of Cucsa.161230 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G26660.1	1.9e-40	60.83	LOB domain-containing protein 24	[more]
AT3G26620.1	2.1e-39	60.00	LOB domain-containing protein 23	[more]
AT1G31320.1	4.3e-32	50.39	LOB domain-containing protein 4	[more]
AT2G30130.1	1.4e-30	47.97	Lateral organ boundaries (LOB) domain family protein	[more]
AT5G66870.1	2.2e-28	49.51	ASYMMETRIC LEAVES 2-like 1	[more]

BLAST of Cucsa.161230 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700207689\|gb\|KGN62808.1\|	2.6e-79	100.00	hypothetical protein Csa_2G373510 [Cucumis sativus]	[more]
gi\|659089563\|ref\|XP_008445577.1\|	2.7e-68	89.80	PREDICTED: LOB domain-containing protein 24-like [Cucumis melo]	[more]
gi\|449446189\|ref\|XP_004140854.1\|	1.2e-52	73.51	PREDICTED: LOB domain-containing protein 24-like [Cucumis sativus]	[more]
gi\|659077366\|ref\|XP_008439169.1\|	6.0e-52	72.55	PREDICTED: LOB domain-containing protein 24-like [Cucumis melo]	[more]
gi\|802750384\|ref\|XP_012087781.1\|	2.2e-41	79.25	PREDICTED: LOB domain-containing protein 24-like [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004883	LOB

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.161230.1	Cucsa.161230.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	DUF260	coord: 5..102 score: 1.9
IPR004883	Lateral organ boundaries, LOB	PROFILE	PS50891	LOB	coord: 4..105 score:
None	No IPR available	unknown	Coil	Coil	coord: 84..118 scor
None	No IPR available	PANTHER	PTHR31301	FAMILY NOT NAMED	coord: 4..129 score: 5.6
None	No IPR available	PANTHER	PTHR31301:SF13	LOB DOMAIN-CONTAINING PROTEIN 23-RELATED	coord: 4..129 score: 5.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.161230	Csa2G373510	Cucumber (Chinese Long) v2	cgycuB233
Cucsa.161230	MELO3C011135	Melon (DHL92) v3.5.1	cgymeB276
Cucsa.161230	ClCG08G012180	Watermelon (Charleston Gray)	cgywcgB282
Cucsa.161230	CSPI02G22180	Wild cucumber (PI 183967)	cgycpiB239
Cucsa.161230	MELO3C011135.2	Melon (DHL92) v3.6.1	cgymedB273
Cucsa.161230	CsaV3_2G030800	Cucumber (Chinese Long) v3	cgycucB247
Cucsa.161230	Bhi04G000705	Wax gourd	cgywgoB317

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.161230	Cucurbita pepo (Zucchini)	cgycpeB0428
Cucsa.161230	Cucurbita pepo (Zucchini)	cgycpeB0444
Cucsa.161230	Bottle gourd (USVL1VR-Ls)	cgylsiB263
Cucsa.161230	Bottle gourd (USVL1VR-Ls)	cgylsiB267
Cucsa.161230	Silver-seed gourd	carcgyB0066
Cucsa.161230	Silver-seed gourd	carcgyB1091
Cucsa.161230	Cucumber (Chinese Long) v3	cgycucB251
Cucsa.161230	Watermelon (97103) v2	cgywmbB274
Cucsa.161230	Watermelon (97103) v2	cgywmbB282
Cucsa.161230	Cucumber (Gy14) v1	cgycgyB101
Cucsa.161230	Cucurbita maxima (Rimu)	cgycmaB0447
Cucsa.161230	Cucurbita maxima (Rimu)	cgycmaB0460
Cucsa.161230	Cucurbita moschata (Rifu)	cgycmoB0448
Cucsa.161230	Cucurbita moschata (Rifu)	cgycmoB0461
Cucsa.161230	Melon (DHL92) v3.5.1	cgymeB282
Cucsa.161230	Watermelon (97103) v1	cgywmB289
Cucsa.161230	Watermelon (97103) v1	cgywmB298