MELO3C011135.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C011135.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	LOB domain-containing protein 24
Location	chr03 : 28428479 .. 28428769 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTACGAGGTGAAGCAGCAGAAACTTTGTATTTTGAAGCAAAATGTAGAATTGAAGATCCAATTTACGGATGTGTTGGGATTATTTCTCAATTACAATATGAATTACACGTGGCAGAAACCCAGTTGGCCAAGACTCGAGCTCAGATTGCTCTCCTCGCTTCCAACCTTCAACAAGCCCAACACGAAGCCCAAGCTTTTGCCTTTGATGACCCCAGCTCAGGCCCAATTTGTATTGGGCTCTCCACTCCAGCCCATTGGCTTCATTCTAGCTTTTCCGATTCATAA

mRNA sequence

ATGGATGTACGAGGTGAAGCAGCAGAAACTTTGTATTTTGAAGCAAAATGTAGAATTGAAGATCCAATTTACGGATGTGTTGGGATTATTTCTCAATTACAATATGAATTACACGTGGCAGAAACCCAGTTGGCCAAGACTCGAGCTCAGATTGCTCTCCTCGCTTCCAACCTTCAACAAGCCCAACACGAAGCCCAAGCTTTTGCCTTTGATGACCCCAGCTCAGGCCCAATTTGTATTGGGCTCTCCACTCCAGCCCATTGGCTTCATTCTAGCTTTTCCGATTCATAA

Coding sequence (CDS)

ATGGATGTACGAGGTGAAGCAGCAGAAACTTTGTATTTTGAAGCAAAATGTAGAATTGAAGATCCAATTTACGGATGTGTTGGGATTATTTCTCAATTACAATATGAATTACACGTGGCAGAAACCCAGTTGGCCAAGACTCGAGCTCAGATTGCTCTCCTCGCTTCCAACCTTCAACAAGCCCAACACGAAGCCCAAGCTTTTGCCTTTGATGACCCCAGCTCAGGCCCAATTTGTATTGGGCTCTCCACTCCAGCCCATTGGCTTCATTCTAGCTTTTCCGATTCATAA

Protein sequence

MDVRGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAQIALLASNLQQAQHEAQAFAFDDPSSGPICIGLSTPAHWLHSSFSDS

Homology

[Close]

BLAST of MELO3C011135.2 vs. NCBI nr
Match: KGN62808.1 (hypothetical protein Csa_2G373510 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 1.4e-34
Identity = 79/93 (84.95%), Postives = 82/93 (88.17%), Query Frame = 0


Query: 1   MDVRGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAQIALLASNLQQ 60
           MD+RGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRA+IALLASN QQ
Sbjct: 55  MDLRGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASNRQQ 114

Query: 61  AQHEAQAFAFDDPSSGPICIGLSTPAHWLHSSF 94
           AQHE   F FDDPSSGPI  GLSTPAH+    F
Sbjct: 115 AQHE--DFPFDDPSSGPIFTGLSTPAHFSEQLF 145

[Close]

BLAST of MELO3C011135.2 vs. NCBI nr
Match: XP_008439169.1 (PREDICTED: LOB domain-containing protein 24-like [Cucumis melo])

HSP 1 Score: 124.8 bits (312), Expect = 1.6e-25
Identity = 66/96 (68.75%), Postives = 77/96 (80.21%), Query Frame = 0


Query: 3   VRGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAQIALLASNLQQAQ 62
           +RGEAAETL FEAKCRIEDP+YGCVGIISQLQ++LHVAETQLAKTRA+IA +ASN+Q+ Q
Sbjct: 57  LRGEAAETLIFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIACVASNVQEEQ 116

Query: 63  HEAQAFAFDDPSSGPIC-----IGLSTPAHWLHSSF 94
            + Q FAF  P  GP       IGLS+PAH  +SSF
Sbjct: 117 PQLQDFAF-QPIQGPNSVGFSQIGLSSPAHCFNSSF 151

[Close]

BLAST of MELO3C011135.2 vs. NCBI nr
Match: XP_022923144.1 (LOB domain-containing protein 24-like [Cucurbita moschata])

HSP 1 Score: 123.6 bits (309), Expect = 3.6e-25
Identity = 64/93 (68.82%), Postives = 77/93 (82.80%), Query Frame = 0


Query: 1   MDVRGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAQIALLASNLQQ 60
           + +R EAAE+L+FEAKCRIEDP+YGCVGIISQLQ++LHVAETQLAKTRA+IA LASNLQ+
Sbjct: 55  LHLRPEAAESLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFLASNLQE 114

Query: 61  AQ-HEAQAFAFDDPSS-GPICIGLSTPAHWLHS 92
           AQ H+  A     P++ G   IGLSTPAHW +S
Sbjct: 115 AQPHDFAAQPIQGPNTIGFSQIGLSTPAHWFNS 147

[Close]

BLAST of MELO3C011135.2 vs. NCBI nr
Match: XP_023522202.1 (LOB domain-containing protein 24-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 123.2 bits (308), Expect = 4.6e-25
Identity = 67/96 (69.79%), Postives = 76/96 (79.17%), Query Frame = 0


Query: 1   MDVRGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAQIALLASNLQQ 60
           + +R EAAETL+FEAKCRIEDP+YGCVGIISQLQ++LHVAETQLAKTRA+IA LASNLQ+
Sbjct: 55  LHLRPEAAETLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFLASNLQE 114

Query: 61  AQHEAQAFAFDDPSSGPIC-----IGLSTPAHWLHS 92
           AQ   Q FA   P  GP       IGLSTPAHW +S
Sbjct: 115 AQ--PQDFAV-QPIQGPNTIGFSQIGLSTPAHWFNS 147

[Close]

BLAST of MELO3C011135.2 vs. NCBI nr
Match: XP_022985104.1 (LOB domain-containing protein 24-like [Cucurbita maxima])

HSP 1 Score: 121.3 bits (303), Expect = 1.8e-24
Identity = 65/94 (69.15%), Postives = 75/94 (79.79%), Query Frame = 0


Query: 3   VRGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAQIALLASNLQQAQ 62
           +R EAAETL+FEAKCRIEDP+YGCVGIISQLQ++LHVAETQLAKTRA+IA LASNL Q +
Sbjct: 57  LRAEAAETLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFLASNLHQ-E 116

Query: 63  HEAQAFAFDDPSSGPIC-----IGLSTPAHWLHS 92
            + Q FA  +P  GP       IGLSTPAHW +S
Sbjct: 117 AQPQDFAV-EPIQGPNTIGFSQIGLSTPAHWFNS 148

[Close]

BLAST of MELO3C011135.2 vs. TAIR10
Match: AT1G31320.1 (LOB domain-containing protein 4)

HSP 1 Score: 57.0 bits (136), Expect = 7.4e-09
Identity = 28/72 (38.89%), Postives = 40/72 (55.56%), Query Frame = 0


Query: 4   RGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAQIALLASNLQQAQH 63
           RG+A  ++ +EA  R+ DP+YGCVG IS LQ ++ V + QLA  +A++  L    Q    
Sbjct: 66  RGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVR-QSTNF 125

Query: 64  EAQAFAFDDPSS 76
                  D PSS
Sbjct: 126 PGHGLCPDSPSS 136

[Close]

BLAST of MELO3C011135.2 vs. TAIR10
Match: AT3G26620.1 (LOB domain-containing protein 23)

HSP 1 Score: 55.5 bits (132), Expect = 2.2e-08
Identity = 25/45 (55.56%), Postives = 33/45 (73.33%), Query Frame = 0


Query: 4  RGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTR 49
          R EA E+L FEAKCR++DP+YGCVGII       H+ +TQ+ KT+
Sbjct: 58 RAEAVESLCFEAKCRVDDPVYGCVGII-------HLLKTQIQKTQ 95

[Close]

BLAST of MELO3C011135.2 vs. TAIR10
Match: AT3G26660.1 (LOB domain-containing protein 24)

HSP 1 Score: 55.5 bits (132), Expect = 2.2e-08
Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = 0


Query: 4  RGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKT 48
          R EA E+L FEAKCR++DP+YGCVGII       H+ +TQ+ KT
Sbjct: 58 RAEAVESLCFEAKCRVDDPVYGCVGII-------HLLKTQIQKT 94

[Close]

BLAST of MELO3C011135.2 vs. TAIR10
Match: AT1G16530.1 (ASYMMETRIC LEAVES 2-like 9)

HSP 1 Score: 53.9 bits (128), Expect = 6.3e-08
Identity = 22/48 (45.83%), Postives = 34/48 (70.83%), Query Frame = 0


Query: 4   RGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAQI 52
           R +A +++ +EA  RI+DP+YGCVG IS L  +L   +TQLA  +A++
Sbjct: 68  RSDAVDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAEL 115

[Close]

BLAST of MELO3C011135.2 vs. TAIR10
Match: AT2G30340.1 (LOB domain-containing protein 13)

HSP 1 Score: 53.1 bits (126), Expect = 1.1e-07
Identity = 22/48 (45.83%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 4   RGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAQI 52
           RG+AA +L +EA  R+ DPIYGC+G IS LQ+ +   +++L   R +I
Sbjct: 105 RGDAANSLVYEANLRLRDPIYGCMGAISALQHHIQSLQSELTTVRTEI 152

[Close]

BLAST of MELO3C011135.2 vs. Swiss-Prot
Match: sp|Q9SHE9|LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.3e-07
Identity = 28/72 (38.89%), Postives = 40/72 (55.56%), Query Frame = 0


Query: 4   RGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAQIALLASNLQQAQH 63
           RG+A  ++ +EA  R+ DP+YGCVG IS LQ ++ V + QLA  +A++  L    Q    
Sbjct: 66  RGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVR-QSTNF 125

Query: 64  EAQAFAFDDPSS 76
                  D PSS
Sbjct: 126 PGHGLCPDSPSS 136

[Close]

BLAST of MELO3C011135.2 vs. Swiss-Prot
Match: sp|P59467|LBD23_ARATH (LOB domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN=LBD23 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.9e-07
Identity = 25/45 (55.56%), Postives = 33/45 (73.33%), Query Frame = 0


Query: 4  RGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTR 49
          R EA E+L FEAKCR++DP+YGCVGII       H+ +TQ+ KT+
Sbjct: 58 RAEAVESLCFEAKCRVDDPVYGCVGII-------HLLKTQIQKTQ 95

[Close]

BLAST of MELO3C011135.2 vs. Swiss-Prot
Match: sp|P59468|LBD24_ARATH (LOB domain-containing protein 24 OS=Arabidopsis thaliana OX=3702 GN=LBD24 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.9e-07
Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = 0


Query: 4  RGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKT 48
          R EA E+L FEAKCR++DP+YGCVGII       H+ +TQ+ KT
Sbjct: 58 RAEAVESLCFEAKCRVDDPVYGCVGII-------HLLKTQIQKT 94

[Close]

BLAST of MELO3C011135.2 vs. Swiss-Prot
Match: sp|Q9SA51|LBD3_ARATH (LOB domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=LBD3 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.1e-06
Identity = 22/48 (45.83%), Postives = 34/48 (70.83%), Query Frame = 0


Query: 4   RGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAQI 52
           R +A +++ +EA  RI+DP+YGCVG IS L  +L   +TQLA  +A++
Sbjct: 68  RSDAVDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAEL 115

[Close]

BLAST of MELO3C011135.2 vs. Swiss-Prot
Match: sp|Q9AT61|LBD13_ARATH (LOB domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=LBD13 PE=1 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 1.9e-06
Identity = 22/48 (45.83%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 4   RGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAQI 52
           RG+AA +L +EA  R+ DPIYGC+G IS LQ+ +   +++L   R +I
Sbjct: 105 RGDAANSLVYEANLRLRDPIYGCMGAISALQHHIQSLQSELTTVRTEI 152

[Close]

BLAST of MELO3C011135.2 vs. TrEMBL
Match: tr|A0A0A0LLX6|A0A0A0LLX6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G373510 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 9.5e-35
Identity = 79/93 (84.95%), Postives = 82/93 (88.17%), Query Frame = 0


Query: 1   MDVRGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAQIALLASNLQQ 60
           MD+RGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRA+IALLASN QQ
Sbjct: 55  MDLRGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASNRQQ 114

Query: 61  AQHEAQAFAFDDPSSGPICIGLSTPAHWLHSSF 94
           AQHE   F FDDPSSGPI  GLSTPAH+    F
Sbjct: 115 AQHE--DFPFDDPSSGPIFTGLSTPAHFSEQLF 145

[Close]

BLAST of MELO3C011135.2 vs. TrEMBL
Match: tr|A0A1S3AY36|A0A1S3AY36_CUCME (LOB domain-containing protein 24-like OS=Cucumis melo OX=3656 GN=LOC103484045 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.1e-25
Identity = 66/96 (68.75%), Postives = 77/96 (80.21%), Query Frame = 0


Query: 3   VRGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAQIALLASNLQQAQ 62
           +RGEAAETL FEAKCRIEDP+YGCVGIISQLQ++LHVAETQLAKTRA+IA +ASN+Q+ Q
Sbjct: 57  LRGEAAETLIFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIACVASNVQEEQ 116

Query: 63  HEAQAFAFDDPSSGPIC-----IGLSTPAHWLHSSF 94
            + Q FAF  P  GP       IGLS+PAH  +SSF
Sbjct: 117 PQLQDFAF-QPIQGPNSVGFSQIGLSSPAHCFNSSF 151

[Close]

BLAST of MELO3C011135.2 vs. TrEMBL
Match: tr|A0A0A0L9N7|A0A0A0L9N7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G180300 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.0e-24
Identity = 66/96 (68.75%), Postives = 77/96 (80.21%), Query Frame = 0


Query: 3   VRGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAQIALLASNLQQAQ 62
           +R EAAETL FEAKCRIEDP+YGCVGIISQLQ+ELHVAETQLAKTRA+IA +ASN+Q+ Q
Sbjct: 57  LRAEAAETLIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQE-Q 116

Query: 63  HEAQAFAFDDPSSGPIC-----IGLSTPAHWLHSSF 94
            + Q FAF +P  GP       IGLSTPAH  +S+F
Sbjct: 117 PQPQDFAF-EPIQGPNSVGFSQIGLSTPAHCFNSTF 150

[Close]

BLAST of MELO3C011135.2 vs. TrEMBL
Match: tr|A0A1R3I6M8|A0A1R3I6M8_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_14540 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.2e-14
Identity = 42/74 (56.76%), Postives = 55/74 (74.32%), Query Frame = 0


Query: 3   VRGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAQIALLASNLQQAQ 62
           +R EAA++LY EA+CR+EDP+YGCVG IS LQ E+H AE+QL KT+A+IA+L S  Q   
Sbjct: 301 LRAEAADSLYLEAQCRVEDPVYGCVGRISLLQQEIHKAESQLVKTQAEIAVLKSQAQ--G 360

Query: 63  HEAQAFAFDDPSSG 77
           H+ QA  F+  S G
Sbjct: 361 HDLQALPFESQSDG 372

[Close]

BLAST of MELO3C011135.2 vs. TrEMBL
Match: tr|A0A1R3K629|A0A1R3K629_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_11096 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.2e-14
Identity = 47/95 (49.47%), Postives = 63/95 (66.32%), Query Frame = 0


Query: 3   VRGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAQIALLASNLQQAQ 62
           +R EAA++LY EA+CR+EDP+YGCVG IS LQ+E+H AETQL KT+A+IA+L S   Q  
Sbjct: 58  LRAEAADSLYLEAQCRVEDPVYGCVGRISLLQHEIHKAETQLVKTQAEIAVLKSQSTQLG 117

Query: 63  H--EAQAFAFDDPSSGPICIGLSTPAHWLHSSFSD 96
           H  + QA  F+  S     IGL+      +  FS+
Sbjct: 118 HDDDLQALQFESQSD---AIGLNNFLQEQYLDFSN 149

The following BLAST results are available for this feature:

BLAST of MELO3C011135.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62808.1	1.4e-34	84.95	hypothetical protein Csa_2G373510 [Cucumis sativus]	[more]
XP_008439169.1	1.6e-25	68.75	PREDICTED: LOB domain-containing protein 24-like [Cucumis melo]	[more]
XP_022923144.1	3.6e-25	68.82	LOB domain-containing protein 24-like [Cucurbita moschata]	[more]
XP_023522202.1	4.6e-25	69.79	LOB domain-containing protein 24-like [Cucurbita pepo subsp. pepo]	[more]
XP_022985104.1	1.8e-24	69.15	LOB domain-containing protein 24-like [Cucurbita maxima]	[more]

BLAST of MELO3C011135.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G31320.1	7.4e-09	38.89	LOB domain-containing protein 4	[more]
AT3G26620.1	2.2e-08	55.56	LOB domain-containing protein 23	[more]
AT3G26660.1	2.2e-08	56.82	LOB domain-containing protein 24	[more]
AT1G16530.1	6.3e-08	45.83	ASYMMETRIC LEAVES 2-like 9	[more]
AT2G30340.1	1.1e-07	45.83	LOB domain-containing protein 13	[more]

BLAST of MELO3C011135.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SHE9\|LBD4_ARATH	1.3e-07	38.89	LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=...	[more]
sp\|P59467\|LBD23_ARATH	3.9e-07	55.56	LOB domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN=LBD23 PE=1 S...	[more]
sp\|P59468\|LBD24_ARATH	3.9e-07	56.82	LOB domain-containing protein 24 OS=Arabidopsis thaliana OX=3702 GN=LBD24 PE=2 S...	[more]
sp\|Q9SA51\|LBD3_ARATH	1.1e-06	45.83	LOB domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=LBD3 PE=2 SV=...	[more]
sp\|Q9AT61\|LBD13_ARATH	1.9e-06	45.83	LOB domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=LBD13 PE=1 S...	[more]

BLAST of MELO3C011135.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LLX6\|A0A0A0LLX6_CUCSA	9.5e-35	84.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G373510 PE=4 SV=1	[more]
tr\|A0A1S3AY36\|A0A1S3AY36_CUCME	1.1e-25	68.75	LOB domain-containing protein 24-like OS=Cucumis melo OX=3656 GN=LOC103484045 PE...	[more]
tr\|A0A0A0L9N7\|A0A0A0L9N7_CUCSA	2.0e-24	68.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G180300 PE=4 SV=1	[more]
tr\|A0A1R3I6M8\|A0A1R3I6M8_COCAP	4.2e-14	56.76	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_14540 PE=3 ...	[more]
tr\|A0A1R3K629\|A0A1R3K629_9ROSI	4.2e-14	49.47	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_11096 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004883	LOB

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C011135.2.1	MELO3C011135.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 30..64
None	No IPR available	PANTHER	PTHR31301	FAMILY NOT NAMED	coord: 3..66
None	No IPR available	PANTHER	PTHR31301:SF13	LOB DOMAIN-CONTAINING PROTEIN 23-RELATED	coord: 3..66
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 4..48 e-value: 1.2E-10 score: 41.7
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 1..51 score: 9.703

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C011135.2	Csa2G373510	Cucumber (Chinese Long) v2	cumedB114
MELO3C011135.2	CSPI02G22180	Wild cucumber (PI 183967)	cpimedB114
MELO3C011135.2	Cucsa.161230	Cucumber (Gy14) v1	cgymedB273
MELO3C011135.2	CsGy2G021930	Cucumber (Gy14) v2	cgybmedB101
MELO3C011135.2	ClCG08G012180	Watermelon (Charleston Gray)	medwcgB292
MELO3C011135.2	Bhi04G000705	Wax gourd	medwgoB323
MELO3C011135.2	CsaV3_2G030800	Cucumber (Chinese Long) v3	cucmedB118

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C011135.2	Silver-seed gourd	carmedB0059
MELO3C011135.2	Silver-seed gourd	carmedB0961
MELO3C011135.2	Cucumber (Chinese Long) v3	cucmedB197
MELO3C011135.2	Watermelon (97103) v2	medwmbB271
MELO3C011135.2	Watermelon (97103) v2	medwmbB293
MELO3C011135.2	Cucumber (Gy14) v1	cgymedB516
MELO3C011135.2	Cucurbita maxima (Rimu)	cmamedB177
MELO3C011135.2	Cucurbita maxima (Rimu)	cmamedB822
MELO3C011135.2	Cucurbita moschata (Rifu)	cmomedB167
MELO3C011135.2	Cucurbita moschata (Rifu)	cmomedB816
MELO3C011135.2	Cucurbita pepo (Zucchini)	cpemedB116
MELO3C011135.2	Cucurbita pepo (Zucchini)	cpemedB897
MELO3C011135.2	Melon (DHL92) v3.6.1	medmedB119
MELO3C011135.2	Bottle gourd (USVL1VR-Ls)	lsimedB320
MELO3C011135.2	Bottle gourd (USVL1VR-Ls)	lsimedB493
MELO3C011135.2	Watermelon (Charleston Gray)	medwcgB267
MELO3C011135.2	Watermelon (97103) v1	medwmB300
MELO3C011135.2	Watermelon (97103) v1	medwmB333