CsGy2G021930 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G021930
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	LOB domain-containing protein 24-like
Location	Chr2 : 30403237 .. 30403780 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCCAAGTCGTTGTGCAGCTTGTAAGTATTTAAGAAGAAGATGTTCATCAAATTGCATTTTCTCTCCTTATTTTCCCTCAAACAATCCTCAAAGATTCGCCATTGTTCATAGAATCTATGGTGCTAGTAATGTTGCTAAATTCCTTCAAGTAAGTACATTGTTTTCATTTATTGAACAATTCATTAAATTATAATCTAAATTAAAAATCTTAGACTCTCTTTTGGGTTAATTTAATTTAATTTAATCAGCAAGTTCCTATGGATCTACGAGGTGAAGCAGCAGAGACTTTGTATTTTGAAGCAAAATGTAGAATTGAAGATCCAATTTACGGATGTGTTGGGATTATTTCCCAATTACAATATGAATTACACGTGGCAGAAACCCAGTTGGCCAAAACTCGAGCTGAGATTGCTCTCCTCGCTTCCAACCGTCAACAAGCCCAACACGAAGACTTTCCATTTGATGACCCCAGCTCAGGCCCAATTTTTACTGGGCTTTCCACTCCAGCCCACTTTTCTGAGCAATTGTTTCGTGCTTAG

mRNA sequence

ATGATTCCAAGTCGTTGTGCAGCTTGTAAGTATTTAAGAAGAAGATGTTCATCAAATTGCATTTTCTCTCCTTATTTTCCCTCAAACAATCCTCAAAGATTCGCCATTGTTCATAGAATCTATGGTGCTAGTAATGTTGCTAAATTCCTTCAACAAGTTCCTATGGATCTACGAGGTGAAGCAGCAGAGACTTTGTATTTTGAAGCAAAATGTAGAATTGAAGATCCAATTTACGGATGTGTTGGGATTATTTCCCAATTACAATATGAATTACACGTGGCAGAAACCCAGTTGGCCAAAACTCGAGCTGAGATTGCTCTCCTCGCTTCCAACCGTCAACAAGCCCAACACGAAGACTTTCCATTTGATGACCCCAGCTCAGGCCCAATTTTTACTGGGCTTTCCACTCCAGCCCACTTTTCTGAGCAATTGTTTCGTGCTTAG

Coding sequence (CDS)

ATGATTCCAAGTCGTTGTGCAGCTTGTAAGTATTTAAGAAGAAGATGTTCATCAAATTGCATTTTCTCTCCTTATTTTCCCTCAAACAATCCTCAAAGATTCGCCATTGTTCATAGAATCTATGGTGCTAGTAATGTTGCTAAATTCCTTCAACAAGTTCCTATGGATCTACGAGGTGAAGCAGCAGAGACTTTGTATTTTGAAGCAAAATGTAGAATTGAAGATCCAATTTACGGATGTGTTGGGATTATTTCCCAATTACAATATGAATTACACGTGGCAGAAACCCAGTTGGCCAAAACTCGAGCTGAGATTGCTCTCCTCGCTTCCAACCGTCAACAAGCCCAACACGAAGACTTTCCATTTGATGACCCCAGCTCAGGCCCAATTTTTACTGGGCTTTCCACTCCAGCCCACTTTTCTGAGCAATTGTTTCGTGCTTAG

Protein sequence

MIPSRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASNRQQAQHEDFPFDDPSSGPIFTGLSTPAHFSEQLFRA

Homology

[Close]

BLAST of CsGy2G021930 vs. NCBI nr
Match: KGN62808.1 (hypothetical protein Csa_2G373510 [Cucumis sativus])

HSP 1 Score: 304.7 bits (779), Expect = 1.7e-79
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MIPSRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGE 60
           MIPSRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGE
Sbjct: 1   MIPSRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGE 60

Query: 61  AAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASNRQQAQHEDF 120
           AAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASNRQQAQHEDF
Sbjct: 61  AAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASNRQQAQHEDF 120

Query: 121 PFDDPSSGPIFTGLSTPAHFSEQLFRA 148
           PFDDPSSGPIFTGLSTPAHFSEQLFRA
Sbjct: 121 PFDDPSSGPIFTGLSTPAHFSEQLFRA 147

[Close]

BLAST of CsGy2G021930 vs. NCBI nr
Match: XP_023522202.1 (LOB domain-containing protein 24-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 221.9 bits (564), Expect = 1.5e-54
Identity = 111/144 (77.08%), Postives = 124/144 (86.11%), Query Frame = 0


Query: 1   MIPSRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGE 60
           MI  RCAACKYLRRRC S+CIFSP+FPSNNPQRFAIVHRIYGASNVAKFL Q+P+ LR E
Sbjct: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFAIVHRIYGASNVAKFLHQLPLHLRPE 60

Query: 61  AAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASNRQQAQHEDF 120
           AAETL+FEAKCRIEDP+YGCVGIISQLQ++LHVAETQLAKTRAEIA LASN Q+AQ +DF
Sbjct: 61  AAETLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFLASNLQEAQPQDF 120

Query: 121 ---PFDDPSS-GPIFTGLSTPAHF 141
              P   P++ G    GLSTPAH+
Sbjct: 121 AVQPIQGPNTIGFSQIGLSTPAHW 144

[Close]

BLAST of CsGy2G021930 vs. NCBI nr
Match: XP_022923144.1 (LOB domain-containing protein 24-like [Cucurbita moschata])

HSP 1 Score: 220.3 bits (560), Expect = 4.3e-54
Identity = 110/144 (76.39%), Postives = 124/144 (86.11%), Query Frame = 0


Query: 1   MIPSRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGE 60
           MI  RCAACKYLRRRC+S+CIFSP+FPSNNPQRFAIVHRIYGASNVAKFL Q+P+ LR E
Sbjct: 1   MISGRCAACKYLRRRCASDCIFSPFFPSNNPQRFAIVHRIYGASNVAKFLHQLPLHLRPE 60

Query: 61  AAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASNRQQAQHEDF 120
           AAE+L+FEAKCRIEDP+YGCVGIISQLQ++LHVAETQLAKTRAEIA LASN Q+AQ  DF
Sbjct: 61  AAESLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFLASNLQEAQPHDF 120

Query: 121 ---PFDDPSS-GPIFTGLSTPAHF 141
              P   P++ G    GLSTPAH+
Sbjct: 121 AAQPIQGPNTIGFSQIGLSTPAHW 144

[Close]

BLAST of CsGy2G021930 vs. NCBI nr
Match: XP_022985104.1 (LOB domain-containing protein 24-like [Cucurbita maxima])

HSP 1 Score: 218.4 bits (555), Expect = 1.6e-53
Identity = 111/145 (76.55%), Postives = 124/145 (85.52%), Query Frame = 0


Query: 1   MIPSRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGE 60
           MI  RCAACKYLRRRC S+CIFSP+FPSNNPQRFAIVHRIYGASNVAKFL Q+P+ LR E
Sbjct: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFAIVHRIYGASNVAKFLHQLPVHLRAE 60

Query: 61  AAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASN-RQQAQHED 120
           AAETL+FEAKCRIEDP+YGCVGIISQLQ++LHVAETQLAKTRAEIA LASN  Q+AQ +D
Sbjct: 61  AAETLFFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIAFLASNLHQEAQPQD 120

Query: 121 F---PFDDPSS-GPIFTGLSTPAHF 141
           F   P   P++ G    GLSTPAH+
Sbjct: 121 FAVEPIQGPNTIGFSQIGLSTPAHW 145

[Close]

BLAST of CsGy2G021930 vs. NCBI nr
Match: XP_004140854.1 (PREDICTED: LOB domain-containing protein 24-like [Cucumis sativus] >KGN57342.1 hypothetical protein Csa_3G180300 [Cucumis sativus])

HSP 1 Score: 216.1 bits (549), Expect = 8.1e-53
Identity = 111/151 (73.51%), Postives = 121/151 (80.13%), Query Frame = 0


Query: 1   MIPSRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGE 60
           MI  RCAACKYLRRRC S+CIFSP+FPSNNPQRF IVHRIYGASNVAKFL Q+P  LR E
Sbjct: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAE 60

Query: 61  AAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASN-RQQAQHED 120
           AAETL FEAKCRIEDP+YGCVGIISQLQ+ELHVAETQLAKTRAEIA +ASN ++Q Q +D
Sbjct: 61  AAETLIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQEQPQPQD 120

Query: 121 FPFDDPSSGPIFT-----GLSTPAHFSEQLF 146
           F F +P  GP        GLSTPAH     F
Sbjct: 121 FAF-EPIQGPNSVGFSQIGLSTPAHCFNSTF 150

[Close]

BLAST of CsGy2G021930 vs. TAIR10
Match: AT3G26620.1 (LOB domain-containing protein 23)

HSP 1 Score: 144.1 bits (362), Expect = 7.1e-35
Identity = 65/102 (63.73%), Postives = 79/102 (77.45%), Query Frame = 0


Query: 1   MIPSRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGE 60
           M P RCAACKYLRRRC  +C+FSPYFP N+PQ+FA VHRIYGA NV+K LQQ+P   R E
Sbjct: 1   MNPKRCAACKYLRRRCPKDCVFSPYFPPNDPQKFACVHRIYGAGNVSKMLQQLPDQTRAE 60

Query: 61  AAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTR 103
           A E+L FEAKCR++DP+YGCVGII       H+ +TQ+ KT+
Sbjct: 61  AVESLCFEAKCRVDDPVYGCVGII-------HLLKTQIQKTQ 95

[Close]

BLAST of CsGy2G021930 vs. TAIR10
Match: AT3G26660.1 (LOB domain-containing protein 24)

HSP 1 Score: 143.7 bits (361), Expect = 9.2e-35
Identity = 65/101 (64.36%), Postives = 78/101 (77.23%), Query Frame = 0


Query: 1   MIPSRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGE 60
           M P RCAACKYLRRRC  +C+FSPYFP N+PQ+FA VHRIYGA NV+K LQQ+P   R E
Sbjct: 1   MNPKRCAACKYLRRRCPKDCVFSPYFPPNDPQKFACVHRIYGAGNVSKMLQQLPDQTRAE 60

Query: 61  AAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKT 102
           A E+L FEAKCR++DP+YGCVGII       H+ +TQ+ KT
Sbjct: 61  AVESLCFEAKCRVDDPVYGCVGII-------HLLKTQIQKT 94

[Close]

BLAST of CsGy2G021930 vs. TAIR10
Match: AT1G31320.1 (LOB domain-containing protein 4)

HSP 1 Score: 134.8 bits (338), Expect = 4.3e-32
Identity = 65/129 (50.39%), Postives = 89/129 (68.99%), Query Frame = 0


Query: 4   SRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGEAAE 63
           S CAACK LRRRC+ +C+FSPYFP++ PQ+FA VHR++GASNV K LQ++P+  RG+A  
Sbjct: 12  SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVS 71

Query: 64  TLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASNRQQAQHEDFPF- 123
           ++ +EA  R+ DP+YGCVG IS LQ ++ V + QLA  +AE+  L    +  Q  +FP  
Sbjct: 72  SMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHL----RVRQSTNFPGH 131

Query: 124 ----DDPSS 128
               D PSS
Sbjct: 132 GLCPDSPSS 136

[Close]

BLAST of CsGy2G021930 vs. TAIR10
Match: AT2G30130.1 (Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 129.4 bits (324), Expect = 1.8e-30
Identity = 58/118 (49.15%), Postives = 84/118 (71.19%), Query Frame = 0


Query: 4   SRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGEAAE 63
           S CA+CK LRRRC+ +CIF+PYFP ++P +FAIVH+++GASNV+K LQ++P+  R +A  
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 64  TLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASNRQ---QAQHE 119
           +L FEA  R+ DP+YGCVG IS LQ ++   + QLA  +AEI  +    +   Q+ H+
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPTLQSHHQ 124

[Close]

BLAST of CsGy2G021930 vs. TAIR10
Match: AT5G66870.1 (ASYMMETRIC LEAVES 2-like 1)

HSP 1 Score: 122.9 bits (307), Expect = 1.7e-28
Identity = 51/103 (49.51%), Postives = 75/103 (72.82%), Query Frame = 0


Query: 4   SRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGEAAE 63
           S CAACK+LRR+C+  C+F+PYFP + PQ+FA VH+++GASNVAK L ++  + R +A  
Sbjct: 6   SPCAACKFLRRKCTQECVFAPYFPPDQPQKFAFVHKVFGASNVAKLLNELASNQREDAVN 65

Query: 64  TLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIA 107
           +L++EA+ R+ DP+YGCVG+IS LQ+ L      L   + E+A
Sbjct: 66  SLFYEAEARLRDPVYGCVGLISILQHRLKQVNHDLENAKKELA 108

[Close]

BLAST of CsGy2G021930 vs. Swiss-Prot
Match: sp|P59467|LBD23_ARATH (LOB domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN=LBD23 PE=1 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.3e-33
Identity = 65/102 (63.73%), Postives = 79/102 (77.45%), Query Frame = 0


Query: 1   MIPSRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGE 60
           M P RCAACKYLRRRC  +C+FSPYFP N+PQ+FA VHRIYGA NV+K LQQ+P   R E
Sbjct: 1   MNPKRCAACKYLRRRCPKDCVFSPYFPPNDPQKFACVHRIYGAGNVSKMLQQLPDQTRAE 60

Query: 61  AAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTR 103
           A E+L FEAKCR++DP+YGCVGII       H+ +TQ+ KT+
Sbjct: 61  AVESLCFEAKCRVDDPVYGCVGII-------HLLKTQIQKTQ 95

[Close]

BLAST of CsGy2G021930 vs. Swiss-Prot
Match: sp|P59468|LBD24_ARATH (LOB domain-containing protein 24 OS=Arabidopsis thaliana OX=3702 GN=LBD24 PE=2 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.7e-33
Identity = 65/101 (64.36%), Postives = 78/101 (77.23%), Query Frame = 0


Query: 1   MIPSRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGE 60
           M P RCAACKYLRRRC  +C+FSPYFP N+PQ+FA VHRIYGA NV+K LQQ+P   R E
Sbjct: 1   MNPKRCAACKYLRRRCPKDCVFSPYFPPNDPQKFACVHRIYGAGNVSKMLQQLPDQTRAE 60

Query: 61  AAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKT 102
           A E+L FEAKCR++DP+YGCVGII       H+ +TQ+ KT
Sbjct: 61  AVESLCFEAKCRVDDPVYGCVGII-------HLLKTQIQKT 94

[Close]

BLAST of CsGy2G021930 vs. Swiss-Prot
Match: sp|Q9SHE9|LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 7.7e-31
Identity = 65/129 (50.39%), Postives = 89/129 (68.99%), Query Frame = 0


Query: 4   SRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGEAAE 63
           S CAACK LRRRC+ +C+FSPYFP++ PQ+FA VHR++GASNV K LQ++P+  RG+A  
Sbjct: 12  SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVS 71

Query: 64  TLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASNRQQAQHEDFPF- 123
           ++ +EA  R+ DP+YGCVG IS LQ ++ V + QLA  +AE+  L    +  Q  +FP  
Sbjct: 72  SMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHL----RVRQSTNFPGH 131

Query: 124 ----DDPSS 128
               D PSS
Sbjct: 132 GLCPDSPSS 136

[Close]

BLAST of CsGy2G021930 vs. Swiss-Prot
Match: sp|Q8LBW3|LBD12_ARATH (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2)

HSP 1 Score: 129.4 bits (324), Expect = 3.2e-29
Identity = 58/118 (49.15%), Postives = 84/118 (71.19%), Query Frame = 0


Query: 4   SRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGEAAE 63
           S CA+CK LRRRC+ +CIF+PYFP ++P +FAIVH+++GASNV+K LQ++P+  R +A  
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 64  TLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASNRQ---QAQHE 119
           +L FEA  R+ DP+YGCVG IS LQ ++   + QLA  +AEI  +    +   Q+ H+
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPTLQSHHQ 124

[Close]

BLAST of CsGy2G021930 vs. Swiss-Prot
Match: sp|Q9FKZ3|LBD36_ARATH (LOB domain-containing protein 36 OS=Arabidopsis thaliana OX=3702 GN=LBD36 PE=2 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 3.0e-27
Identity = 51/103 (49.51%), Postives = 75/103 (72.82%), Query Frame = 0


Query: 4   SRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGEAAE 63
           S CAACK+LRR+C+  C+F+PYFP + PQ+FA VH+++GASNVAK L ++  + R +A  
Sbjct: 6   SPCAACKFLRRKCTQECVFAPYFPPDQPQKFAFVHKVFGASNVAKLLNELASNQREDAVN 65

Query: 64  TLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIA 107
           +L++EA+ R+ DP+YGCVG+IS LQ+ L      L   + E+A
Sbjct: 66  SLFYEAEARLRDPVYGCVGLISILQHRLKQVNHDLENAKKELA 108

[Close]

BLAST of CsGy2G021930 vs. TrEMBL
Match: tr|A0A0A0LLX6|A0A0A0LLX6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G373510 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 1.1e-79
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MIPSRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGE 60
           MIPSRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGE
Sbjct: 1   MIPSRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGE 60

Query: 61  AAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASNRQQAQHEDF 120
           AAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASNRQQAQHEDF
Sbjct: 61  AAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASNRQQAQHEDF 120

Query: 121 PFDDPSSGPIFTGLSTPAHFSEQLFRA 148
           PFDDPSSGPIFTGLSTPAHFSEQLFRA
Sbjct: 121 PFDDPSSGPIFTGLSTPAHFSEQLFRA 147

[Close]

BLAST of CsGy2G021930 vs. TrEMBL
Match: tr|A0A0A0L9N7|A0A0A0L9N7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G180300 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 5.3e-53
Identity = 111/151 (73.51%), Postives = 121/151 (80.13%), Query Frame = 0


Query: 1   MIPSRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGE 60
           MI  RCAACKYLRRRC S+CIFSP+FPSNNPQRF IVHRIYGASNVAKFL Q+P  LR E
Sbjct: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRAE 60

Query: 61  AAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASN-RQQAQHED 120
           AAETL FEAKCRIEDP+YGCVGIISQLQ+ELHVAETQLAKTRAEIA +ASN ++Q Q +D
Sbjct: 61  AAETLIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQEQPQPQD 120

Query: 121 FPFDDPSSGPIFT-----GLSTPAHFSEQLF 146
           F F +P  GP        GLSTPAH     F
Sbjct: 121 FAF-EPIQGPNSVGFSQIGLSTPAHCFNSTF 150

[Close]

BLAST of CsGy2G021930 vs. TrEMBL
Match: tr|A0A1S3AY36|A0A1S3AY36_CUCME (LOB domain-containing protein 24-like OS=Cucumis melo OX=3656 GN=LOC103484045 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 2.6e-52
Identity = 111/153 (72.55%), Postives = 122/153 (79.74%), Query Frame = 0


Query: 1   MIPSRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGE 60
           MI  RCAACKYLRRRC S+CIFSP+FPSNNPQRF IVHRIYGASNVAKFL Q+P  LRGE
Sbjct: 1   MISGRCAACKYLRRRCPSDCIFSPFFPSNNPQRFTIVHRIYGASNVAKFLHQLPTHLRGE 60

Query: 61  AAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASN--RQQAQHE 120
           AAETL FEAKCRIEDP+YGCVGIISQLQ++LHVAETQLAKTRAEIA +ASN   +Q Q +
Sbjct: 61  AAETLIFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIACVASNVQEEQPQLQ 120

Query: 121 DFPFDDPSSGPIFT-----GLSTPAH-FSEQLF 146
           DF F  P  GP        GLS+PAH F+   F
Sbjct: 121 DFAF-QPIQGPNSVGFSQIGLSSPAHCFNSSFF 152

[Close]

BLAST of CsGy2G021930 vs. TrEMBL
Match: tr|A0A2I4EP87|A0A2I4EP87_9ROSI (LOB domain-containing protein 24-like isoform X2 OS=Juglans regia OX=51240 GN=LOC108991422 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.2e-41
Identity = 83/123 (67.48%), Postives = 101/123 (82.11%), Query Frame = 0


Query: 1   MIPSRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGE 60
           MI  RCAACKYLRRRC S+CIFSPYFP N+PQRFA VHRIYGASNV K LQ++P  LR +
Sbjct: 1   MISGRCAACKYLRRRCPSHCIFSPYFPPNDPQRFACVHRIYGASNVGKMLQKLPPHLRAQ 60

Query: 61  AAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASNRQQAQHEDF 120
            A+TLY EAKCRI+DP+YGCVGIIS L  ++H+AE+QLAKT+AEIA+L S  ++AQ ++ 
Sbjct: 61  TADTLYTEAKCRIQDPVYGCVGIISHLHQQIHIAESQLAKTQAEIAVLNSIAREAQVQEI 120

Query: 121 PFD 124
             D
Sbjct: 121 EAD 123

[Close]

BLAST of CsGy2G021930 vs. TrEMBL
Match: tr|A0A1R3K6V7|A0A1R3K6V7_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_10880 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.6e-41
Identity = 84/123 (68.29%), Postives = 99/123 (80.49%), Query Frame = 0


Query: 1   MIPSRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGE 60
           M P RCAACKYLRR+C S+CIFSPYFPSNNPQRFA VHRIYGASNVAK LQQ+P+D R E
Sbjct: 3   MNPRRCAACKYLRRKCPSDCIFSPYFPSNNPQRFASVHRIYGASNVAKLLQQLPVDHRAE 62

Query: 61  AAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASNRQQAQHEDF 120
           A E+LYFEA+CRIEDP+YGCV +I  LQ ++H AE+QLAKTRA+IA+L         +  
Sbjct: 63  AVESLYFEAQCRIEDPVYGCVRLIFLLQQQIHNAESQLAKTRAQIAVLKPENANHNSQVQ 122

Query: 121 PFD 124
           PF+
Sbjct: 123 PFE 125

The following BLAST results are available for this feature:

BLAST of CsGy2G021930 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62808.1	1.7e-79	100.00	hypothetical protein Csa_2G373510 [Cucumis sativus]	[more]
XP_023522202.1	1.5e-54	77.08	LOB domain-containing protein 24-like [Cucurbita pepo subsp. pepo]	[more]
XP_022923144.1	4.3e-54	76.39	LOB domain-containing protein 24-like [Cucurbita moschata]	[more]
XP_022985104.1	1.6e-53	76.55	LOB domain-containing protein 24-like [Cucurbita maxima]	[more]
XP_004140854.1	8.1e-53	73.51	PREDICTED: LOB domain-containing protein 24-like [Cucumis sativus] >KGN57342.1 h...	[more]

BLAST of CsGy2G021930 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G26620.1	7.1e-35	63.73	LOB domain-containing protein 23	[more]
AT3G26660.1	9.2e-35	64.36	LOB domain-containing protein 24	[more]
AT1G31320.1	4.3e-32	50.39	LOB domain-containing protein 4	[more]
AT2G30130.1	1.8e-30	49.15	Lateral organ boundaries (LOB) domain family protein	[more]
AT5G66870.1	1.7e-28	49.51	ASYMMETRIC LEAVES 2-like 1	[more]

BLAST of CsGy2G021930 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P59467\|LBD23_ARATH	1.3e-33	63.73	LOB domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN=LBD23 PE=1 S...	[more]
sp\|P59468\|LBD24_ARATH	1.7e-33	64.36	LOB domain-containing protein 24 OS=Arabidopsis thaliana OX=3702 GN=LBD24 PE=2 S...	[more]
sp\|Q9SHE9\|LBD4_ARATH	7.7e-31	50.39	LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=...	[more]
sp\|Q8LBW3\|LBD12_ARATH	3.2e-29	49.15	LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 S...	[more]
sp\|Q9FKZ3\|LBD36_ARATH	3.0e-27	49.51	LOB domain-containing protein 36 OS=Arabidopsis thaliana OX=3702 GN=LBD36 PE=2 S...	[more]

BLAST of CsGy2G021930 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LLX6\|A0A0A0LLX6_CUCSA	1.1e-79	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G373510 PE=4 SV=1	[more]
tr\|A0A0A0L9N7\|A0A0A0L9N7_CUCSA	5.3e-53	73.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G180300 PE=4 SV=1	[more]
tr\|A0A1S3AY36\|A0A1S3AY36_CUCME	2.6e-52	72.55	LOB domain-containing protein 24-like OS=Cucumis melo OX=3656 GN=LOC103484045 PE...	[more]
tr\|A0A2I4EP87\|A0A2I4EP87_9ROSI	1.2e-41	67.48	LOB domain-containing protein 24-like isoform X2 OS=Juglans regia OX=51240 GN=LO...	[more]
tr\|A0A1R3K6V7\|A0A1R3K6V7_9ROSI	1.6e-41	68.29	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_10880 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004883	LOB

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G021930.1	CsGy2G021930.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 84..118
None	No IPR available	PANTHER	PTHR31301:SF13	LOB DOMAIN-CONTAINING PROTEIN 23-RELATED	coord: 4..117
None	No IPR available	PANTHER	PTHR31301	FAMILY NOT NAMED	coord: 4..117
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 5..102 e-value: 1.5E-38 score: 131.2
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 4..105 score: 24.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy2G021930	Csa2G373510	Cucumber (Chinese Long) v2	cgybcuB057
CsGy2G021930	MELO3C011135	Melon (DHL92) v3.5.1	cgybmeB102
CsGy2G021930	ClCG08G012180	Watermelon (Charleston Gray)	cgybwcgB152
CsGy2G021930	CSPI02G22180	Wild cucumber (PI 183967)	cgybcpiB057
CsGy2G021930	MELO3C011135.2	Melon (DHL92) v3.6.1	cgybmedB101
CsGy2G021930	CsaV3_2G030800	Cucumber (Chinese Long) v3	cgybcucB065
CsGy2G021930	Bhi04G000705	Wax gourd	cgybwgoB160

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy2G021930	Watermelon (97103) v2	cgybwmbB102
CsGy2G021930	Watermelon (97103) v2	cgybwmbB153
CsGy2G021930	Cucurbita maxima (Rimu)	cgybcmaB146
CsGy2G021930	Cucurbita maxima (Rimu)	cgybcmaB168
CsGy2G021930	Cucurbita maxima (Rimu)	cgybcmaB251
CsGy2G021930	Cucurbita moschata (Rifu)	cgybcmoB137
CsGy2G021930	Cucurbita moschata (Rifu)	cgybcmoB160
CsGy2G021930	Cucurbita moschata (Rifu)	cgybcmoB239
CsGy2G021930	Cucurbita pepo (Zucchini)	cgybcpeB162
CsGy2G021930	Cucurbita pepo (Zucchini)	cgybcpeB253
CsGy2G021930	Cucurbita pepo (Zucchini)	cgybcpeB260
CsGy2G021930	Bottle gourd (USVL1VR-Ls)	cgyblsiB108
CsGy2G021930	Bottle gourd (USVL1VR-Ls)	cgyblsiB126
CsGy2G021930	Watermelon (Charleston Gray)	cgybwcgB101
CsGy2G021930	Watermelon (97103) v1	cgybwmB105
CsGy2G021930	Silver-seed gourd	carcgybB0060
CsGy2G021930	Silver-seed gourd	carcgybB0960