MELO3C011135 (gene) Melon (DHL92) v3.5.1

NameMELO3C011135
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionLOB domain-containing 24-like protein
Locationchr3 : 26150148 .. 26150438 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTACGAGGTGAAGCAGCAGAAACTTTGTATTTTGAAGCAAAATGTAGAATTGAAGATCCAATTTACGGATGTGTTGGGATTATTTCTCAATTACAATATGAATTACACGTGGCAGAAACCCAGTTGGCCAAGACTCGAGCTCAGATTGCTCTCCTCGCTTCCAACCTTCAACAAGCCCAACACGAAGCCCAAGCTTTTGCCTTTGATGACCCCAGCTCAGGCCCAATTTGTATTGGGCTCTCCACTCCAGCCCATTGGCTTCATTCTAGCTTTTCCGATTCATAA

mRNA sequence

ATGGATGTACGAGGTGAAGCAGCAGAAACTTTGTATTTTGAAGCAAAATGTAGAATTGAAGATCCAATTTACGGATGTGTTGGGATTATTTCTCAATTACAATATGAATTACACGTGGCAGAAACCCAGTTGGCCAAGACTCGAGCTCAGATTGCTCTCCTCGCTTCCAACCTTCAACAAGCCCAACACGAAGCCCAAGCTTTTGCCTTTGATGACCCCAGCTCAGGCCCAATTTGTATTGGGCTCTCCACTCCAGCCCATTGGCTTCATTCTAGCTTTTCCGATTCATAA

Coding sequence (CDS)

ATGGATGTACGAGGTGAAGCAGCAGAAACTTTGTATTTTGAAGCAAAATGTAGAATTGAAGATCCAATTTACGGATGTGTTGGGATTATTTCTCAATTACAATATGAATTACACGTGGCAGAAACCCAGTTGGCCAAGACTCGAGCTCAGATTGCTCTCCTCGCTTCCAACCTTCAACAAGCCCAACACGAAGCCCAAGCTTTTGCCTTTGATGACCCCAGCTCAGGCCCAATTTGTATTGGGCTCTCCACTCCAGCCCATTGGCTTCATTCTAGCTTTTCCGATTCATAA

Protein sequence

MDVRGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAQIALLASNLQQAQHEAQAFAFDDPSSGPICIGLSTPAHWLHSSFSDS*
BLAST of MELO3C011135 vs. Swiss-Prot
Match: LBD24_ARATH (LOB domain-containing protein 24 OS=Arabidopsis thaliana GN=LBD24 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.2e-11
Identity = 31/60 (51.67%), Postives = 43/60 (71.67%), Query Frame = 1

Query: 4   RGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAQIALLASNLQQAQH 63
           R EA E+L FEAKCR++DP+YGCVGII  L+ ++   + +LAKT+A+IA+  + L Q Q+
Sbjct: 58  RAEAVESLCFEAKCRVDDPVYGCVGIIHLLKTQIQKTQNELAKTQAEIAVAQTKLSQTQN 117

BLAST of MELO3C011135 vs. Swiss-Prot
Match: LBD23_ARATH (LOB domain-containing protein 23 OS=Arabidopsis thaliana GN=LBD23 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 5.8e-11
Identity = 30/57 (52.63%), Postives = 41/57 (71.93%), Query Frame = 1

Query: 4   RGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAQIALLASNLQQ 61
           R EA E+L FEAKCR++DP+YGCVGII  L+ ++   + +LAKT+A+IA+  + L Q
Sbjct: 58  RAEAVESLCFEAKCRVDDPVYGCVGIIHLLKTQIQKTQNELAKTQAEIAVAQTKLSQ 114

BLAST of MELO3C011135 vs. Swiss-Prot
Match: LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.0e-07
Identity = 28/72 (38.89%), Postives = 38/72 (52.78%), Query Frame = 1

Query: 4   RGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAQIALLASNLQQAQH 63
           RG+A  ++ +EA  R+ DP+YGCVG IS LQ ++ V + QLA  +A++  L    Q    
Sbjct: 66  RGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVR-QSTNF 125

Query: 64  EAQAFAFDDPSS 76
                  D PSS
Sbjct: 126 PGHGLCPDSPSS 136

BLAST of MELO3C011135 vs. Swiss-Prot
Match: LBD3_ARATH (LOB domain-containing protein 3 OS=Arabidopsis thaliana GN=LBD3 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.9e-06
Identity = 22/48 (45.83%), Postives = 32/48 (66.67%), Query Frame = 1

Query: 4   RGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAQI 52
           R +A +++ +EA  RI+DP+YGCVG IS L  +L   +TQLA  +A++
Sbjct: 68  RSDAVDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAEL 115

BLAST of MELO3C011135 vs. Swiss-Prot
Match: LBD13_ARATH (LOB domain-containing protein 13 OS=Arabidopsis thaliana GN=LBD13 PE=2 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 3.3e-06
Identity = 22/48 (45.83%), Postives = 31/48 (64.58%), Query Frame = 1

Query: 4   RGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAQI 52
           RG+AA +L +EA  R+ DPIYGC+G IS LQ+ +   +++L   R +I
Sbjct: 105 RGDAANSLVYEANLRLRDPIYGCMGAISALQHHIQSLQSELTTVRTEI 152

BLAST of MELO3C011135 vs. TrEMBL
Match: A0A0A0LLX6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G373510 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 6.8e-35
Identity = 79/93 (84.95%), Postives = 82/93 (88.17%), Query Frame = 1

Query: 1   MDVRGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAQIALLASNLQQ 60
           MD+RGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRA+IALLASN QQ
Sbjct: 55  MDLRGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASNRQQ 114

Query: 61  AQHEAQAFAFDDPSSGPICIGLSTPAHWLHSSF 94
           AQHE   F FDDPSSGPI  GLSTPAH+    F
Sbjct: 115 AQHE--DFPFDDPSSGPIFTGLSTPAHFSEQLF 145

BLAST of MELO3C011135 vs. TrEMBL
Match: A0A0A0L9N7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G180300 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.1e-24
Identity = 66/96 (68.75%), Postives = 77/96 (80.21%), Query Frame = 1

Query: 3   VRGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAQIALLASNLQQAQ 62
           +R EAAETL FEAKCRIEDP+YGCVGIISQLQ+ELHVAETQLAKTRA+IA +ASN+Q+ Q
Sbjct: 57  LRAEAAETLIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQE-Q 116

Query: 63  HEAQAFAFDDPSSGPIC-----IGLSTPAHWLHSSF 94
            + Q FAF +P  GP       IGLSTPAH  +S+F
Sbjct: 117 PQPQDFAF-EPIQGPNSVGFSQIGLSTPAHCFNSTF 150

BLAST of MELO3C011135 vs. TrEMBL
Match: W9S930_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_005793 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 7.3e-13
Identity = 42/73 (57.53%), Postives = 52/73 (71.23%), Query Frame = 1

Query: 2   DVRGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAQI-ALLASNLQQ 61
           D+R +AAE + FEA+CRIE P+YGC GI+SQL  ++H AETQLAKTRAQI AL+ SN+  
Sbjct: 57  DLRAQAAECMCFEAQCRIESPVYGCGGIVSQLHQQIHFAETQLAKTRAQIKALIISNV-- 116

Query: 62  AQHEAQAFAFDDP 74
            Q E      D P
Sbjct: 117 VQEEESQLLHDQP 127

BLAST of MELO3C011135 vs. TrEMBL
Match: W9RC85_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013514 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-12
Identity = 36/62 (58.06%), Postives = 50/62 (80.65%), Query Frame = 1

Query: 2   DVRGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAQIALLASNLQQA 61
           D+R  AA++L+FEA+ RIEDP+YGCVGII+QL +++H AET+LAKTRA++AL +S     
Sbjct: 57  DLRARAADSLFFEAQRRIEDPVYGCVGIITQLHHQIHEAETELAKTRAELALRSSGTALT 116

Query: 62  QH 64
            H
Sbjct: 117 SH 118

BLAST of MELO3C011135 vs. TrEMBL
Match: A0A0B0PT25_GOSAR (LOB domain-containing 24-like protein OS=Gossypium arboreum GN=F383_07421 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.1e-12
Identity = 35/60 (58.33%), Postives = 49/60 (81.67%), Query Frame = 1

Query: 3   VRGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAQIALLASNLQQAQ 62
           +R EAA++LYFEA+CR+EDP+YGCVG+I  LQ ++H AE+QL KT+A+IA++ S  Q  Q
Sbjct: 57  LRSEAADSLYFEAQCRLEDPVYGCVGLIFLLQQQIHSAESQLIKTQAEIAVMKSQTQHPQ 116

BLAST of MELO3C011135 vs. TAIR10
Match: AT3G26660.1 (AT3G26660.1 LOB domain-containing protein 24)

HSP 1 Score: 70.5 bits (171), Expect = 6.6e-13
Identity = 31/60 (51.67%), Postives = 43/60 (71.67%), Query Frame = 1

Query: 4   RGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAQIALLASNLQQAQH 63
           R EA E+L FEAKCR++DP+YGCVGII  L+ ++   + +LAKT+A+IA+  + L Q Q+
Sbjct: 58  RAEAVESLCFEAKCRVDDPVYGCVGIIHLLKTQIQKTQNELAKTQAEIAVAQTKLSQTQN 117

BLAST of MELO3C011135 vs. TAIR10
Match: AT3G26620.1 (AT3G26620.1 LOB domain-containing protein 23)

HSP 1 Score: 68.2 bits (165), Expect = 3.3e-12
Identity = 30/57 (52.63%), Postives = 41/57 (71.93%), Query Frame = 1

Query: 4   RGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAQIALLASNLQQ 61
           R EA E+L FEAKCR++DP+YGCVGII  L+ ++   + +LAKT+A+IA+  + L Q
Sbjct: 58  RAEAVESLCFEAKCRVDDPVYGCVGIIHLLKTQIQKTQNELAKTQAEIAVAQTKLSQ 114

BLAST of MELO3C011135 vs. TAIR10
Match: AT1G31320.1 (AT1G31320.1 LOB domain-containing protein 4)

HSP 1 Score: 57.4 bits (137), Expect = 5.7e-09
Identity = 28/72 (38.89%), Postives = 38/72 (52.78%), Query Frame = 1

Query: 4   RGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAQIALLASNLQQAQH 63
           RG+A  ++ +EA  R+ DP+YGCVG IS LQ ++ V + QLA  +A++  L    Q    
Sbjct: 66  RGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVR-QSTNF 125

Query: 64  EAQAFAFDDPSS 76
                  D PSS
Sbjct: 126 PGHGLCPDSPSS 136

BLAST of MELO3C011135 vs. TAIR10
Match: AT1G16530.1 (AT1G16530.1 ASYMMETRIC LEAVES 2-like 9)

HSP 1 Score: 53.1 bits (126), Expect = 1.1e-07
Identity = 22/48 (45.83%), Postives = 32/48 (66.67%), Query Frame = 1

Query: 4   RGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAQI 52
           R +A +++ +EA  RI+DP+YGCVG IS L  +L   +TQLA  +A++
Sbjct: 68  RSDAVDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAEL 115

BLAST of MELO3C011135 vs. TAIR10
Match: AT2G30340.1 (AT2G30340.1 LOB domain-containing protein 13)

HSP 1 Score: 52.4 bits (124), Expect = 1.8e-07
Identity = 22/48 (45.83%), Postives = 31/48 (64.58%), Query Frame = 1

Query: 4   RGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAQI 52
           RG+AA +L +EA  R+ DPIYGC+G IS LQ+ +   +++L   R +I
Sbjct: 105 RGDAANSLVYEANLRLRDPIYGCMGAISALQHHIQSLQSELTTVRTEI 152

BLAST of MELO3C011135 vs. NCBI nr
Match: gi|659089563|ref|XP_008445577.1| (PREDICTED: LOB domain-containing protein 24-like [Cucumis melo])

HSP 1 Score: 196.4 bits (498), Expect = 2.2e-47
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1

Query: 1   MDVRGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAQIALLASNLQQ 60
           MDVRGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAQIALLASNLQQ
Sbjct: 55  MDVRGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAQIALLASNLQQ 114

Query: 61  AQHEAQAFAFDDPSSGPICIGLSTPAHWLHSSFSDS 97
           AQHEAQAFAFDDPSSGPICIGLSTPAHWLHSSFSDS
Sbjct: 115 AQHEAQAFAFDDPSSGPICIGLSTPAHWLHSSFSDS 150

BLAST of MELO3C011135 vs. NCBI nr
Match: gi|700207689|gb|KGN62808.1| (hypothetical protein Csa_2G373510 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 9.8e-35
Identity = 79/93 (84.95%), Postives = 82/93 (88.17%), Query Frame = 1

Query: 1   MDVRGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAQIALLASNLQQ 60
           MD+RGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRA+IALLASN QQ
Sbjct: 55  MDLRGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASNRQQ 114

Query: 61  AQHEAQAFAFDDPSSGPICIGLSTPAHWLHSSF 94
           AQHE   F FDDPSSGPI  GLSTPAH+    F
Sbjct: 115 AQHE--DFPFDDPSSGPIFTGLSTPAHFSEQLF 145

BLAST of MELO3C011135 vs. NCBI nr
Match: gi|659077366|ref|XP_008439169.1| (PREDICTED: LOB domain-containing protein 24-like [Cucumis melo])

HSP 1 Score: 124.8 bits (312), Expect = 8.3e-26
Identity = 66/96 (68.75%), Postives = 77/96 (80.21%), Query Frame = 1

Query: 3   VRGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAQIALLASNLQQAQ 62
           +RGEAAETL FEAKCRIEDP+YGCVGIISQLQ++LHVAETQLAKTRA+IA +ASN+Q+ Q
Sbjct: 57  LRGEAAETLIFEAKCRIEDPVYGCVGIISQLQHQLHVAETQLAKTRAEIACVASNVQEEQ 116

Query: 63  HEAQAFAFDDPSSGPIC-----IGLSTPAHWLHSSF 94
            + Q FAF  P  GP       IGLS+PAH  +SSF
Sbjct: 117 PQLQDFAF-QPIQGPNSVGFSQIGLSSPAHCFNSSF 151

BLAST of MELO3C011135 vs. NCBI nr
Match: gi|449446189|ref|XP_004140854.1| (PREDICTED: LOB domain-containing protein 24-like [Cucumis sativus])

HSP 1 Score: 120.6 bits (301), Expect = 1.6e-24
Identity = 66/96 (68.75%), Postives = 77/96 (80.21%), Query Frame = 1

Query: 3   VRGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAQIALLASNLQQAQ 62
           +R EAAETL FEAKCRIEDP+YGCVGIISQLQ+ELHVAETQLAKTRA+IA +ASN+Q+ Q
Sbjct: 57  LRAEAAETLIFEAKCRIEDPVYGCVGIISQLQHELHVAETQLAKTRAEIACVASNVQE-Q 116

Query: 63  HEAQAFAFDDPSSGPIC-----IGLSTPAHWLHSSF 94
            + Q FAF +P  GP       IGLSTPAH  +S+F
Sbjct: 117 PQPQDFAF-EPIQGPNSVGFSQIGLSTPAHCFNSTF 150

BLAST of MELO3C011135 vs. NCBI nr
Match: gi|1009139482|ref|XP_015887148.1| (PREDICTED: LOB domain-containing protein 24-like [Ziziphus jujuba])

HSP 1 Score: 84.0 bits (206), Expect = 1.6e-13
Identity = 39/60 (65.00%), Postives = 49/60 (81.67%), Query Frame = 1

Query: 3  VRGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAQIALLASNLQQAQ 62
          +R EAAE+LY+EAKCRIEDP+YGC GIISQL  ++H AE+Q+AK RAQIA L SN  + +
Sbjct: 9  LRVEAAESLYYEAKCRIEDPVYGCAGIISQLHQQIHNAESQVAKIRAQIAFLNSNAHEME 68

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
LBD24_ARATH1.2e-1151.67LOB domain-containing protein 24 OS=Arabidopsis thaliana GN=LBD24 PE=2 SV=1[more]
LBD23_ARATH5.8e-1152.63LOB domain-containing protein 23 OS=Arabidopsis thaliana GN=LBD23 PE=2 SV=1[more]
LBD4_ARATH1.0e-0738.89LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1[more]
LBD3_ARATH1.9e-0645.83LOB domain-containing protein 3 OS=Arabidopsis thaliana GN=LBD3 PE=2 SV=1[more]
LBD13_ARATH3.3e-0645.83LOB domain-containing protein 13 OS=Arabidopsis thaliana GN=LBD13 PE=2 SV=2[more]
Match NameE-valueIdentityDescription
A0A0A0LLX6_CUCSA6.8e-3584.95Uncharacterized protein OS=Cucumis sativus GN=Csa_2G373510 PE=4 SV=1[more]
A0A0A0L9N7_CUCSA1.1e-2468.75Uncharacterized protein OS=Cucumis sativus GN=Csa_3G180300 PE=4 SV=1[more]
W9S930_9ROSA7.3e-1357.53Uncharacterized protein OS=Morus notabilis GN=L484_005793 PE=4 SV=1[more]
W9RC85_9ROSA1.3e-1258.06Uncharacterized protein OS=Morus notabilis GN=L484_013514 PE=4 SV=1[more]
A0A0B0PT25_GOSAR2.1e-1258.33LOB domain-containing 24-like protein OS=Gossypium arboreum GN=F383_07421 PE=4 S... [more]
Match NameE-valueIdentityDescription
AT3G26660.16.6e-1351.67 LOB domain-containing protein 24[more]
AT3G26620.13.3e-1252.63 LOB domain-containing protein 23[more]
AT1G31320.15.7e-0938.89 LOB domain-containing protein 4[more]
AT1G16530.11.1e-0745.83 ASYMMETRIC LEAVES 2-like 9[more]
AT2G30340.11.8e-0745.83 LOB domain-containing protein 13[more]
Match NameE-valueIdentityDescription
gi|659089563|ref|XP_008445577.1|2.2e-47100.00PREDICTED: LOB domain-containing protein 24-like [Cucumis melo][more]
gi|700207689|gb|KGN62808.1|9.8e-3584.95hypothetical protein Csa_2G373510 [Cucumis sativus][more]
gi|659077366|ref|XP_008439169.1|8.3e-2668.75PREDICTED: LOB domain-containing protein 24-like [Cucumis melo][more]
gi|449446189|ref|XP_004140854.1|1.6e-2468.75PREDICTED: LOB domain-containing protein 24-like [Cucumis sativus][more]
gi|1009139482|ref|XP_015887148.1|1.6e-1365.00PREDICTED: LOB domain-containing protein 24-like [Ziziphus jujuba][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004883LOB
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C011135T1MELO3C011135T1mRNA


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004883Lateral organ boundaries, LOBPFAMPF03195DUF260coord: 4..48
score: 5.3
IPR004883Lateral organ boundaries, LOBPROFILEPS50891LOBcoord: 1..51
score: 9
NoneNo IPR availableunknownCoilCoilcoord: 30..64
scor
NoneNo IPR availablePANTHERPTHR31301FAMILY NOT NAMEDcoord: 4..77
score: 8.9
NoneNo IPR availablePANTHERPTHR31301:SF13LOB DOMAIN-CONTAINING PROTEIN 23-RELATEDcoord: 4..77
score: 8.9