Bhi01G001004 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi01G001004
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Peptidoglycan-binding LysM domain-containing protein
Location	chr1 : 27702756 .. 27704029 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCAAATATTTAAAAAATCAAGAATCTACTGAAAGATATATATAGATATGTATAAAATAAGGAGAAGGTGAAAGGAAGGTAAAATTGAACCTCAAAAGTAATGTAGAATAATAAATATATAGTTAGGTCCTTATTAGTAATTAGAAAGAGTATGTATATTATAATGGTTTTGCCGTTTGGGAGAAATTGAGACAAGTTGAAACCAATCCAAAATGTAGAACACAAGTGGACGTAAGCTCAACGTCCCAACCAAAATCCCTCTTTTAACTTTTCTTCTCTCTTATCATAAACTAAAACCACTTTATAAATACTTACTTTAATTTCTCCATCTCCATTTCATTTTAAACTCTCTTTCTCAAAAATAAAAGAAACAAAAAACAAAAAATCCACCACCATGCCCCGCGTCTCTATTTGCAGAAGTAGGCCACAGTCTTCACGAACCCTAATCGACGCCGTCTCCTGGTACTGCGCCGTCGGCCTGTTGGGCCTGATCTTGATTGGGTCCATCAGAGAAACTTCGTCCTCTTCCTCCTCCTCCGATGACCGGTTGCTGATCAGAGGGAACTTGGAGACGGGGCGGCCGTGCGATGAGATTTATGTGGTGGGAGAAGGAGAAACGCTTCACACCATTAGCGACAAGTGCGGTGACCCGTTTATCGTGGAGCGGAACCCGCATATCCATGACCCGGATGATGTCTTCCCCGGTTTGGTTATTAAAATTATCGCCTCCCATAAACCTTCCAACTTCGGATTAATCCAACCTGCTTAATTTTCATCCTTTTCTCTTTTTTTTTTTTTTTTTTTTCTAAATAATTTCCAATTTCCAAACCAATAATTTAAACTCTTCCCGGAGTTTTCAGGCAAATTTATACCCCCACCCCAAAATATATACATATATATAAGCTTTAGATTTTTTTGGAATTATAATTTCCCAGACACAGACTTGTATGTATTTTCTTTCTCAGGGATATAGAGGTAAAATATGGCTCATCATCTTTCTCTTGTATGTACAAATATCCTAATTAATATATATATATATTTAAGAGAAAGAATATGTCTATTTGTAATTTGTCTTTTTTCTTTCTTTTATTTTTTATTTTTACTTTCAAATATCTAAATTTAATAAACAAAATATATATGAACTATGGTCATTTCAACAGTAACTCGCATTTTTACGGTAGCTCAATTTTTCTAAATATTGCTTTTCAAAGGTAATAAATTATAGTTAATTTTTATGCTGTAAGCTCTTATATGACTTGATTGGCCTACTCCTA

mRNA sequence

ATCAAATATTTAAAAAATCAAGAATCTACTGAAAGATATATATAGATATGTATAAAATAAGGAGAAGGTGAAAGGAAGGTAAAATTGAACCTCAAAAGTAATGTAGAATAATAAATATATAGTTAGGTCCTTATTAGTAATTAGAAAGAGTATGTATATTATAATGGTTTTGCCGTTTGGGAGAAATTGAGACAAGTTGAAACCAATCCAAAATGTAGAACACAAGTGGACGTAAGCTCAACGTCCCAACCAAAATCCCTCTTTTAACTTTTCTTCTCTCTTATCATAAACTAAAACCACTTTATAAATACTTACTTTAATTTCTCCATCTCCATTTCATTTTAAACTCTCTTTCTCAAAAATAAAAGAAACAAAAAACAAAAAATCCACCACCATGCCCCGCGTCTCTATTTGCAGAAGTAGGCCACAGTCTTCACGAACCCTAATCGACGCCGTCTCCTGGTACTGCGCCGTCGGCCTGTTGGGCCTGATCTTGATTGGGTCCATCAGAGAAACTTCGTCCTCTTCCTCCTCCTCCGATGACCGGTTGCTGATCAGAGGGAACTTGGAGACGGGGCGGCCGTGCGATGAGATTTATGTGGTGGGAGAAGGAGAAACGCTTCACACCATTAGCGACAAGTGCGGTGACCCGTTTATCGTGGAGCGGAACCCGCATATCCATGACCCGGATGATGTCTTCCCCGGTTTGGTTATTAAAATTATCGCCTCCCATAAACCTTCCAACTTCGGATTAATCCAACCTGCTTAATTTTCATCCTTTTCTCTTTTTTTTTTTTTTTTTTTTCTAAATAATTTCCAATTTCCAAACCAATAATTTAAACTCTTCCCGGAGTTTTCAGGCAAATTTATACCCCCACCCCAAAATATATACATATATATAAGCTTTAGATTTTTTTGGAATTATAATTTCCCAGACACAGACTTGTATGTATTTTCTTTCTCAGGGATATAGAGGTAAAATATGGCTCATCATCTTTCTCTTGTATGTACAAATATCCTAATTAATATATATATATATTTAAGAGAAAGAATATGTCTATTTGTAATTTGTCTTTTTTCTTTCTTTTATTTTTTATTTTTACTTTCAAATATCTAAATTTAATAAACAAAATATATATGAACTATGGTCATTTCAACAGTAACTCGCATTTTTACGGTAGCTCAATTTTTCTAAATATTGCTTTTCAAAGGTAATAAATTATAGTTAATTTTTATGCTGTAAGCTCTTATATGACTTGATTGGCCTACTCCTA

Coding sequence (CDS)

ATGCCCCGCGTCTCTATTTGCAGAAGTAGGCCACAGTCTTCACGAACCCTAATCGACGCCGTCTCCTGGTACTGCGCCGTCGGCCTGTTGGGCCTGATCTTGATTGGGTCCATCAGAGAAACTTCGTCCTCTTCCTCCTCCTCCGATGACCGGTTGCTGATCAGAGGGAACTTGGAGACGGGGCGGCCGTGCGATGAGATTTATGTGGTGGGAGAAGGAGAAACGCTTCACACCATTAGCGACAAGTGCGGTGACCCGTTTATCGTGGAGCGGAACCCGCATATCCATGACCCGGATGATGTCTTCCCCGGTTTGGTTATTAAAATTATCGCCTCCCATAAACCTTCCAACTTCGGATTAATCCAACCTGCTTAA

Protein sequence

MPRVSICRSRPQSSRTLIDAVSWYCAVGLLGLILIGSIRETSSSSSSSDDRLLIRGNLETGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIASHKPSNFGLIQPA

Homology

[Close]

BLAST of Bhi01G001004 vs. TAIR10
Match: AT5G62150.1 (peptidoglycan-binding LysM domain-containing protein)

HSP 1 Score: 118.2 bits (295), Expect = 3.5e-27
Identity = 58/91 (63.74%), Postives = 67/91 (73.63%), Query Frame = 0


Query: 19  DAVSWYCAVGLLGLILIGSIRETXXXXXXXXXRLLIRGNLETGRPCDEIYVVGEGETLHT 78
           D  +W  AV LL LIL+ S+RE             IRG+  + +PC+EIY+VGEGETLHT
Sbjct: 10  DMSAWCSAVVLLSLILLLSVRENNASNS-------IRGSQFSTKPCEEIYIVGEGETLHT 69

Query: 79  ISDKCGDPFIVERNPHIHDPDDVFPGLVIKI 110
           I DKCGDPFIVERNPHIHDPDDVFPGLV+KI
Sbjct: 70  IGDKCGDPFIVERNPHIHDPDDVFPGLVLKI 93

[Close]

BLAST of Bhi01G001004 vs. TAIR10
Match: AT4G25433.1 (peptidoglycan-binding LysM domain-containing protein)

HSP 1 Score: 111.7 bits (278), Expect = 3.3e-25
Identity = 59/113 (52.21%), Postives = 74/113 (65.49%), Query Frame = 0


Query: 1   MPRVSICRSRPQSSRTLIDAVSWYCAVGLLGLILIGSIRETXXXXXXXXXR----LLIRG 60
           M RV++ RS         + V+ YC V LL L L GS++ +         R     + RG
Sbjct: 1   MIRVTVSRS---------NTVASYCLVALLILTLAGSVKNSNGGGSGEYYRGRNCEVWRG 60

Query: 61  NLETGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKI 110
                RPC+E+YVVGEG+TLH+IS+KCGDPFIVERNPHIHDPDDVFPGL+IK+
Sbjct: 61  KQMMERPCEELYVVGEGDTLHSISEKCGDPFIVERNPHIHDPDDVFPGLLIKL 104

[Close]

BLAST of Bhi01G001004 vs. TAIR10
Match: AT3G52790.1 (peptidoglycan-binding LysM domain-containing protein)

HSP 1 Score: 97.8 bits (242), Expect = 4.9e-21
Identity = 49/104 (47.12%), Postives = 64/104 (61.54%), Query Frame = 0


Query: 13  SSRTLIDAVSWYCAVGLLGLILIGSIRETXXXXXXXXXR----LLIRGNLETGRPCDEIY 72
           SS  + + +SWYCAV    ++L+ S +           +    ++I G       CDEIY
Sbjct: 5   SSMAVAEKISWYCAVFAAMMLLMNSFQVAQEGSTEIVEKQQPSMMITGYSHRRPACDEIY 64

Query: 73  VVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIAS 113
            V EGETL TIS+KCGDP+IVE NPHIHD DD+FPGL+I+I  S
Sbjct: 65  EVKEGETLQTISEKCGDPYIVEGNPHIHDHDDLFPGLLIRITPS 108

[Close]

BLAST of Bhi01G001004 vs. TrEMBL
Match: tr|A0A1S3AXP2|A0A1S3AXP2_CUCME (uncharacterized protein LOC103484036 OS=Cucumis melo OX=3656 GN=LOC103484036 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 6.7e-41
Identity = 95/121 (78.51%), Postives = 96/121 (79.34%), Query Frame = 0


Query: 1   MPRVSICRS-RPQ---SSRTLIDAVSWYCAVGLLGLILIGSIRETXXXXXXXXXRLLIRG 60
           MP VSI RS RPQ   SSR LID VSWYCAVGLLGLILIGSIRET          L  RG
Sbjct: 1   MPGVSIPRSRRPQYSSSSRPLIDVVSWYCAVGLLGLILIGSIRETSSSSGDQGRSL--RG 60

Query: 61  NLETGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIASHKPS 118
           NL T RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIAS   +
Sbjct: 61  NLVTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIASSTHN 119

[Close]

BLAST of Bhi01G001004 vs. TrEMBL
Match: tr|A0A0A0L5R9|A0A0A0L5R9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G179200 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.0e-40
Identity = 92/114 (80.70%), Postives = 95/114 (83.33%), Query Frame = 0


Query: 1   MPRVSICRS-RPQ-SSRTLIDAVSWYCAVGLLGLILIGSIRETXXXXXXXXXRLLIRGNL 60
           MP VS+ RS RPQ SSR LID VSWYCAVGLLGLILIGSIRET           L+RGNL
Sbjct: 1   MPGVSVPRSRRPQSSSRPLIDVVSWYCAVGLLGLILIGSIRETSSSGDGR----LLRGNL 60

Query: 61  ETGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIAS 113
            T RPCDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKIIAS
Sbjct: 61  VTWRPCDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIIAS 110

[Close]

BLAST of Bhi01G001004 vs. TrEMBL
Match: tr|A0A2N9FVG3|A0A2N9FVG3_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS18841 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 5.7e-32
Identity = 70/106 (66.04%), Postives = 80/106 (75.47%), Query Frame = 0


Query: 12  QSSRTLIDAVSWYCAVGLLGLILIGSIRETXXXXXXXXXRLLIRGNLETGRPCDEIYVVG 71
           ++S ++ D+ SWYCA+ LLGLIL+ SIRE+            +RGN    RPCDEIYVVG
Sbjct: 2   KASISIADSASWYCAITLLGLILLASIRESSVTDDQ-----TVRGNQFLNRPCDEIYVVG 61

Query: 72  EGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIASHKPSN 118
           EGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKII   +  N
Sbjct: 62  EGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIITPSQDKN 102

[Close]

BLAST of Bhi01G001004 vs. TrEMBL
Match: tr|A0A1Q3B223|A0A1Q3B223_CEPFO (LysM domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_05358 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 7.5e-32
Identity = 72/101 (71.29%), Postives = 78/101 (77.23%), Query Frame = 0


Query: 12  QSSRTLIDAVSWYCAVGLLGLILIGSIRETXXXXXXXXXRLLIRGNLETGRPCDEIYVVG 71
           +SS ++ DA SWYCAV LL LIL+GSIRE+            +RGN    RPCDEIYVVG
Sbjct: 14  KSSVSITDAASWYCAVVLLALILVGSIRESYIPEEP------VRGNQFLNRPCDEIYVVG 73

Query: 72  EGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIAS 113
           EGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKI  S
Sbjct: 74  EGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKITPS 108

[Close]

BLAST of Bhi01G001004 vs. TrEMBL
Match: tr|V4S410|V4S410_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10006227mg PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.7e-31
Identity = 75/110 (68.18%), Postives = 80/110 (72.73%), Query Frame = 0


Query: 8   RSRPQSSRTLIDAVSWYCAVGLLGLILIGSIRETXXXXXXXXXRLLIR-GN-LETGRPCD 67
           R    SS TL DA SWYCA+ +L LILIGSIR             ++R GN L   RPCD
Sbjct: 8   RGAASSSATLADAASWYCAIVILALILIGSIRGNSLADEPHDYDHVMRPGNQLLNRRPCD 67

Query: 68  EIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIASHKP 116
           EIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKII+   P
Sbjct: 68  EIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISPSTP 117

[Close]

BLAST of Bhi01G001004 vs. NCBI nr
Match: XP_022985106.1 (uncharacterized protein LOC111483184 [Cucurbita maxima])

HSP 1 Score: 180.6 bits (457), Expect = 3.2e-42
Identity = 86/119 (72.27%), Postives = 93/119 (78.15%), Query Frame = 0


Query: 1   MPRVSICRSRPQSSRTLIDAVSWYCAVGLLGLILIGSIRETXXXXXXXXXRLLIRGNLET 60
           MP +   R+ P SSR LID VSWYCAV +LGLILIGSIRET           ++RGNL T
Sbjct: 1   MPLLYTSRTEPPSSRLLIDVVSWYCAVAILGLILIGSIRETSSSASADDGSQMLRGNLLT 60

Query: 61  GRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIASHKPSNFG 120
           GR CDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKII+SH P   G
Sbjct: 61  GRACDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIISSHNPPKLG 119

[Close]

BLAST of Bhi01G001004 vs. NCBI nr
Match: XP_008439155.1 (PREDICTED: uncharacterized protein LOC103484036 [Cucumis melo])

HSP 1 Score: 175.6 bits (444), Expect = 1.0e-40
Identity = 95/121 (78.51%), Postives = 96/121 (79.34%), Query Frame = 0


Query: 1   MPRVSICRS-RPQ---SSRTLIDAVSWYCAVGLLGLILIGSIRETXXXXXXXXXRLLIRG 60
           MP VSI RS RPQ   SSR LID VSWYCAVGLLGLILIGSIRET          L  RG
Sbjct: 1   MPGVSIPRSRRPQYSSSSRPLIDVVSWYCAVGLLGLILIGSIRETSSSSGDQGRSL--RG 60

Query: 61  NLETGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIASHKPS 118
           NL T RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIAS   +
Sbjct: 61  NLVTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIASSTHN 119

[Close]

BLAST of Bhi01G001004 vs. NCBI nr
Match: XP_004150301.1 (PREDICTED: uncharacterized protein LOC101210054 [Cucumis sativus] >KGN57330.1 hypothetical protein Csa_3G179200 [Cucumis sativus])

HSP 1 Score: 174.1 bits (440), Expect = 3.0e-40
Identity = 92/114 (80.70%), Postives = 95/114 (83.33%), Query Frame = 0


Query: 1   MPRVSICRS-RPQ-SSRTLIDAVSWYCAVGLLGLILIGSIRETXXXXXXXXXRLLIRGNL 60
           MP VS+ RS RPQ SSR LID VSWYCAVGLLGLILIGSIRET           L+RGNL
Sbjct: 1   MPGVSVPRSRRPQSSSRPLIDVVSWYCAVGLLGLILIGSIRETSSSGDGR----LLRGNL 60

Query: 61  ETGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIAS 113
            T RPCDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKIIAS
Sbjct: 61  VTWRPCDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIIAS 110

[Close]

BLAST of Bhi01G001004 vs. NCBI nr
Match: XP_022157015.1 (uncharacterized protein LOC111023841 [Momordica charantia])

HSP 1 Score: 172.9 bits (437), Expect = 6.6e-40
Identity = 85/113 (75.22%), Postives = 88/113 (77.88%), Query Frame = 0


Query: 8   RSRPQSSRTLIDAVSWYCAVGLLGLILIGSIRETXXXXXXXXXRLLIRGNLETGRPCDEI 67
           RS   SSR   D VSWYCAVG+L LILIGSIRE+           L RGNL  GRPCDEI
Sbjct: 10  RSGAPSSRPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRLARGNLVRGRPCDEI 69

Query: 68  YVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIASHKPSNFGL 121
           YVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKII+S  PSN GL
Sbjct: 70  YVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSNPSNSGL 122

[Close]

BLAST of Bhi01G001004 vs. NCBI nr
Match: GAV61832.1 (LysM domain-containing protein [Cephalotus follicularis])

HSP 1 Score: 145.6 bits (366), Expect = 1.1e-31
Identity = 72/101 (71.29%), Postives = 78/101 (77.23%), Query Frame = 0


Query: 12  QSSRTLIDAVSWYCAVGLLGLILIGSIRETXXXXXXXXXRLLIRGNLETGRPCDEIYVVG 71
           +SS ++ DA SWYCAV LL LIL+GSIRE+            +RGN    RPCDEIYVVG
Sbjct: 14  KSSVSITDAASWYCAVVLLALILVGSIRESYIPEEP------VRGNQFLNRPCDEIYVVG 73

Query: 72  EGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIAS 113
           EGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKI  S
Sbjct: 74  EGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKITPS 108

The following BLAST results are available for this feature:

BLAST of Bhi01G001004 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G62150.1	3.5e-27	63.74	peptidoglycan-binding LysM domain-containing protein	[more]
AT4G25433.1	3.3e-25	52.21	peptidoglycan-binding LysM domain-containing protein	[more]
AT3G52790.1	4.9e-21	47.12	peptidoglycan-binding LysM domain-containing protein	[more]

BLAST of Bhi01G001004 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi01G001004 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AXP2\|A0A1S3AXP2_CUCME	6.7e-41	78.51	uncharacterized protein LOC103484036 OS=Cucumis melo OX=3656 GN=LOC103484036 PE=...	[more]
tr\|A0A0A0L5R9\|A0A0A0L5R9_CUCSA	2.0e-40	80.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G179200 PE=4 SV=1	[more]
tr\|A0A2N9FVG3\|A0A2N9FVG3_FAGSY	5.7e-32	66.04	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS18841 PE=4 SV=1	[more]
tr\|A0A1Q3B223\|A0A1Q3B223_CEPFO	7.5e-32	71.29	LysM domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_053...	[more]
tr\|V4S410\|V4S410_9ROSI	1.7e-31	68.18	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10006227mg PE=4 ...	[more]

BLAST of Bhi01G001004 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022985106.1	3.2e-42	72.27	uncharacterized protein LOC111483184 [Cucurbita maxima]	[more]
XP_008439155.1	1.0e-40	78.51	PREDICTED: uncharacterized protein LOC103484036 [Cucumis melo]	[more]
XP_004150301.1	3.0e-40	80.70	PREDICTED: uncharacterized protein LOC101210054 [Cucumis sativus] >KGN57330.1 hy...	[more]
XP_022157015.1	6.6e-40	75.22	uncharacterized protein LOC111023841 [Momordica charantia]	[more]
GAV61832.1	1.1e-31	71.29	LysM domain-containing protein [Cephalotus follicularis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR018392	LysM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi01M001004	Bhi01M001004	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018392	LysM domain	PFAM	PF01476	LysM	coord: 68..109 e-value: 2.1E-4 score: 21.2
IPR018392	LysM domain	CDD	cd00118	LysM	coord: 67..109 e-value: 4.53337E-5 score: 36.3093
None	No IPR available	PANTHER	PTHR33648	FAMILY NOT NAMED	coord: 12..114
None	No IPR available	PANTHER	PTHR33648:SF1	SUBFAMILY NOT NAMED	coord: 12..114

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi01G001004	Csa3G179200	Cucumber (Chinese Long) v2	cuwgoB286
Bhi01G001004	MELO3C006864	Melon (DHL92) v3.5.1	mewgoB541
Bhi01G001004	CSPI03G16490	Wild cucumber (PI 183967)	cpiwgoB286
Bhi01G001004	Cucsa.251100	Cucumber (Gy14) v1	cgywgoB516
Bhi01G001004	Cucsa.363100	Cucumber (Gy14) v1	cgywgoB729
Bhi01G001004	CmaCh16G001560	Cucurbita maxima (Rimu)	cmawgoB0433
Bhi01G001004	Lsi05G012710	Bottle gourd (USVL1VR-Ls)	lsiwgoB434
Bhi01G001004	Cp4.1LG14g05920	Cucurbita pepo (Zucchini)	cpewgoB0290
Bhi01G001004	MELO3C006864.2	Melon (DHL92) v3.6.1	medwgoB543
Bhi01G001004	Carg16707	Silver-seed gourd	carwgoB1017
Bhi01G001004	CsaV3_6G005880	Cucumber (Chinese Long) v3	cucwgoB574
Bhi01G001004	CsaV3_3G016690	Cucumber (Chinese Long) v3	cucwgoB290
Bhi01G001004	Cla006216	Watermelon (97103) v1	wgowmB213
Bhi01G001004	Cla97C05G089680	Watermelon (97103) v2	wgowmbB192

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi01G001004	Wax gourd	wgowgoB030
Bhi01G001004	Cucumber (Gy14) v1	cgywgoB609
Bhi01G001004	Cucumber (Gy14) v2	cgybwgoB274
Bhi01G001004	Cucumber (Gy14) v2	cgybwgoB456
Bhi01G001004	Cucurbita maxima (Rimu)	cmawgoB0507
Bhi01G001004	Cucurbita maxima (Rimu)	cmawgoB0728
Bhi01G001004	Cucurbita maxima (Rimu)	cmawgoB0729
Bhi01G001004	Cucurbita moschata (Rifu)	cmowgoB0429
Bhi01G001004	Cucurbita moschata (Rifu)	cmowgoB0506
Bhi01G001004	Cucurbita moschata (Rifu)	cmowgoB0721
Bhi01G001004	Cucurbita moschata (Rifu)	cmowgoB0722
Bhi01G001004	Cucurbita moschata (Rifu)	cmowgoB1107
Bhi01G001004	Cucurbita pepo (Zucchini)	cpewgoB0025
Bhi01G001004	Cucurbita pepo (Zucchini)	cpewgoB0243
Bhi01G001004	Cucurbita pepo (Zucchini)	cpewgoB0403
Bhi01G001004	Cucurbita pepo (Zucchini)	cpewgoB0925
Bhi01G001004	Cucurbita pepo (Zucchini)	cpewgoB0929
Bhi01G001004	Wild cucumber (PI 183967)	cpiwgoB482
Bhi01G001004	Cucumber (Chinese Long) v3	cucwgoB491
Bhi01G001004	Cucumber (Chinese Long) v2	cuwgoB479
Bhi01G001004	Bottle gourd (USVL1VR-Ls)	lsiwgoB044
Bhi01G001004	Melon (DHL92) v3.6.1	medwgoB039
Bhi01G001004	Melon (DHL92) v3.5.1	mewgoB040
Bhi01G001004	Watermelon (Charleston Gray)	wcgwgoB207
Bhi01G001004	Watermelon (Charleston Gray)	wcgwgoB440
Bhi01G001004	Watermelon (97103) v2	wgowmbB165
Bhi01G001004	Watermelon (97103) v1	wgowmB224
Bhi01G001004	Silver-seed gourd	carwgoB0008
Bhi01G001004	Silver-seed gourd	carwgoB0836
Bhi01G001004	Silver-seed gourd	carwgoB1065
Bhi01G001004	Silver-seed gourd	carwgoB1082