Cp4.1LG14g05920 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG14g05920
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPeptidoglycan-binding LysM domain-containing protein
LocationCp4.1LG14 : 708561 .. 708935 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCCTGCTCTATACTTCCAGAACTGGGCCACCCTCTTCGCGACTCCTAATCGACGTCGTTTCCTGGTACTGCGCCCTCGCCCTCTTGGGCCTCATTCTCATCGGCTCTATCAGAGAAACCTCCTCCTCCTCCGCCTCCGCTGACGACGGTGGCCAGATGCTCAGAGGAAACTTGCTGACGGGGCGGGCCTGCGATGAGATTTACGTTGTCGGAGAAGGAGAAACGCTGCACACGATTAGCGACAAGTGCGGTGACCCGTATATCGTGGAGCGGAACCCGCATATCCATGACCCGGATGACGTCTTCCCCGGTTTGGTAATCAAAATCATCTCCTCCCACAACCCTCCCAAGTTGGGATTCCAAACCGGTTAA

mRNA sequence

ATGCCCCTGCTCTATACTTCCAGAACTGGGCCACCCTCTTCGCGACTCCTAATCGACGTCGTTTCCTGGTACTGCGCCCTCGCCCTCTTGGGCCTCATTCTCATCGGCTCTATCAGAGAAACCTCCTCCTCCTCCGCCTCCGCTGACGACGGTGGCCAGATGCTCAGAGGAAACTTGCTGACGGGGCGGGCCTGCGATGAGATTTACGTTGTCGGAGAAGGAGAAACGCTGCACACGATTAGCGACAAGTGCGGTGACCCGTATATCGTGGAGCGGAACCCGCATATCCATGACCCGGATGACGTCTTCCCCGGTTTGGTAATCAAAATCATCTCCTCCCACAACCCTCCCAAGTTGGGATTCCAAACCGGTTAA

Coding sequence (CDS)

ATGCCCCTGCTCTATACTTCCAGAACTGGGCCACCCTCTTCGCGACTCCTAATCGACGTCGTTTCCTGGTACTGCGCCCTCGCCCTCTTGGGCCTCATTCTCATCGGCTCTATCAGAGAAACCTCCTCCTCCTCCGCCTCCGCTGACGACGGTGGCCAGATGCTCAGAGGAAACTTGCTGACGGGGCGGGCCTGCGATGAGATTTACGTTGTCGGAGAAGGAGAAACGCTGCACACGATTAGCGACAAGTGCGGTGACCCGTATATCGTGGAGCGGAACCCGCATATCCATGACCCGGATGACGTCTTCCCCGGTTTGGTAATCAAAATCATCTCCTCCCACAACCCTCCCAAGTTGGGATTCCAAACCGGTTAA

Protein sequence

MPLLYTSRTGPPSSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGNLLTGRACDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIISSHNPPKLGFQTG
Homology
[Close]
BLAST of Cp4.1LG14g05920 vs. TrEMBL
Match: A0A0A0L5R9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G179200 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 4.0e-40
Identity = 87/107 (81.31%), Postives = 92/107 (85.98%), Query Frame = 1 

Query: 7   SRTGPPSSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGNLLTGRACD 66
           SR    SSR LIDVVSWYCA+ LLGLILIGSIRETSSS       G++LRGNL+T R CD
Sbjct: 9   SRRPQSSSRPLIDVVSWYCAVGLLGLILIGSIRETSSSG-----DGRLLRGNLVTWRPCD 68

Query: 67  EIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIISS 114
           EIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKII+S
Sbjct: 69  EIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIIAS 110

[Close]
BLAST of Cp4.1LG14g05920 vs. TrEMBL
Match: V4S410_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006227mg PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 3.7e-33
Identity = 77/114 (67.54%), Postives = 82/114 (71.93%), Query Frame = 1 

Query: 7   SRTGPPSSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGN-LLTGRAC 66
           +R    SS  L D  SWYCA+ +L LILIGSIR  S +    D    M  GN LL  R C
Sbjct: 7   TRGAASSSATLADAASWYCAIVILALILIGSIRGNSLADEPHDYDHVMRPGNQLLNRRPC 66

Query: 67  DEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIISSHNPPKL 120
           DEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKIIS   P KL
Sbjct: 67  DEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISPSTPRKL 120

[Close]
BLAST of Cp4.1LG14g05920 vs. TrEMBL
Match: A0A067EYG4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033289mg PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 3.7e-33
Identity = 77/114 (67.54%), Postives = 82/114 (71.93%), Query Frame = 1 

Query: 7   SRTGPPSSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGN-LLTGRAC 66
           +R    SS  L D  SWYCA+ +L LILIGSIR  S +    D    M  GN LL  R C
Sbjct: 7   TRGAASSSATLADAASWYCAIVILALILIGSIRGNSLADEPHDYDHVMRPGNQLLNRRPC 66

Query: 67  DEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIISSHNPPKL 120
           DEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKIIS   P KL
Sbjct: 67  DEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISPSTPRKL 120

[Close]
BLAST of Cp4.1LG14g05920 vs. TrEMBL
Match: A0A067JQR1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26171 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 3.1e-32
Identity = 73/103 (70.87%), Postives = 81/103 (78.64%), Query Frame = 1 

Query: 17  LIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGNLLTGRACDEIYVVGEGET 76
           + D  SWYCA+ LLGLIL+GSI+E SSSS +     +  +GN L  R CDEIYVVGEGET
Sbjct: 7   IADAASWYCAIVLLGLILLGSIKEISSSSTA-----EPFKGNQLLDRHCDEIYVVGEGET 66

Query: 77  LHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIISSHNPPKL 120
           LHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKI  S  P KL
Sbjct: 67  LHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKITPS-KPRKL 103

[Close]
BLAST of Cp4.1LG14g05920 vs. TrEMBL
Match: I3T9A0_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.0e-31
Identity = 66/94 (70.21%), Postives = 82/94 (87.23%), Query Frame = 1 

Query: 19  DVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGNLLTGRACDEIYVVGEGETLH 78
           D  SW+CA+ LLG+IL+GSI+E++S+++  D+    +RGN L  RACDEIYVVGEGETL+
Sbjct: 13  DSASWFCAMVLLGIILLGSIKESTSNTSDGDE----VRGNNLRDRACDEIYVVGEGETLN 72

Query: 79  TISDKCGDPYIVERNPHIHDPDDVFPGLVIKIIS 113
           TISDKCGDP+IVERNPHIHDPDDVFPGLVI+II+
Sbjct: 73  TISDKCGDPFIVERNPHIHDPDDVFPGLVIRIIT 102

[Close]
BLAST of Cp4.1LG14g05920 vs. TAIR10
Match: AT5G62150.1 (AT5G62150.1 peptidoglycan-binding LysM domain-containing protein)

HSP 1 Score: 119.8 bits (299), Expect = 1.2e-27
Identity = 59/104 (56.73%), Postives = 76/104 (73.08%), Query Frame = 1 

Query: 7   SRTGPPSSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGNLLTGRACD 66
           SRTG        D+ +W  A+ LL LIL+ S+RE ++S++        +RG+  + + C+
Sbjct: 4   SRTGSS------DMSAWCSAVVLLSLILLLSVRENNASNS--------IRGSQFSTKPCE 63

Query: 67  EIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKI 111
           EIY+VGEGETLHTI DKCGDP+IVERNPHIHDPDDVFPGLV+KI
Sbjct: 64  EIYIVGEGETLHTIGDKCGDPFIVERNPHIHDPDDVFPGLVLKI 93

[Close]
BLAST of Cp4.1LG14g05920 vs. TAIR10
Match: AT4G25433.1 (AT4G25433.1 peptidoglycan-binding LysM domain-containing protein)

HSP 1 Score: 111.3 bits (277), Expect = 4.3e-25
Identity = 52/95 (54.74%), Postives = 71/95 (74.74%), Query Frame = 1 

Query: 19  DVVSWYCALALLGLILIGSIRETSSSSASADDGG---QMLRGNLLTGRACDEIYVVGEGE 78
           + V+ YC +ALL L L GS++ ++   +     G   ++ RG  +  R C+E+YVVGEG+
Sbjct: 10  NTVASYCLVALLILTLAGSVKNSNGGGSGEYYRGRNCEVWRGKQMMERPCEELYVVGEGD 69

Query: 79  TLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKI 111
           TLH+IS+KCGDP+IVERNPHIHDPDDVFPGL+IK+
Sbjct: 70  TLHSISEKCGDPFIVERNPHIHDPDDVFPGLLIKL 104

[Close]
BLAST of Cp4.1LG14g05920 vs. TAIR10
Match: AT3G52790.1 (AT3G52790.1 peptidoglycan-binding LysM domain-containing protein)

HSP 1 Score: 103.6 bits (257), Expect = 8.9e-23
Identity = 53/107 (49.53%), Postives = 67/107 (62.62%), Query Frame = 1 

Query: 10  GPPSSRLLIDVVSWYCALALLGLILIGSIR---ETSSSSASADDGGQMLRGNLLTGRACD 69
           G  SS  + + +SWYCA+    ++L+ S +   E S+          M+ G      ACD
Sbjct: 2   GKSSSMAVAEKISWYCAVFAAMMLLMNSFQVAQEGSTEIVEKQQPSMMITGYSHRRPACD 61

Query: 70  EIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIISS 114
           EIY V EGETL TIS+KCGDPYIVE NPHIHD DD+FPGL+I+I  S
Sbjct: 62  EIYEVKEGETLQTISEKCGDPYIVEGNPHIHDHDDLFPGLLIRITPS 108

[Close]
BLAST of Cp4.1LG14g05920 vs. NCBI nr
Match: gi|449465170|ref|XP_004150301.1| (PREDICTED: uncharacterized protein LOC101210054 [Cucumis sativus])

HSP 1 Score: 172.2 bits (435), Expect = 5.8e-40
Identity = 87/107 (81.31%), Postives = 92/107 (85.98%), Query Frame = 1 

Query: 7   SRTGPPSSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGNLLTGRACD 66
           SR    SSR LIDVVSWYCA+ LLGLILIGSIRETSSS       G++LRGNL+T R CD
Sbjct: 9   SRRPQSSSRPLIDVVSWYCAVGLLGLILIGSIRETSSSG-----DGRLLRGNLVTWRPCD 68

Query: 67  EIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIISS 114
           EIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKII+S
Sbjct: 69  EIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIIAS 110

[Close]
BLAST of Cp4.1LG14g05920 vs. NCBI nr
Match: gi|659077342|ref|XP_008439155.1| (PREDICTED: uncharacterized protein LOC103484036 [Cucumis melo])

HSP 1 Score: 172.2 bits (435), Expect = 5.8e-40
Identity = 88/105 (83.81%), Postives = 93/105 (88.57%), Query Frame = 1 

Query: 13  SSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGNLLTGRACDEIYVVG 72
           SSR LIDVVSWYCA+ LLGLILIGSIRETSSSS    D G+ LRGNL+T R CDEIYVVG
Sbjct: 17  SSRPLIDVVSWYCAVGLLGLILIGSIRETSSSSG---DQGRSLRGNLVTWRPCDEIYVVG 76

Query: 73  EGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKII--SSHN 116
           EGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKII  S+HN
Sbjct: 77  EGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIASSTHN 118

[Close]
BLAST of Cp4.1LG14g05920 vs. NCBI nr
Match: gi|567858288|ref|XP_006421827.1| (hypothetical protein CICLE_v10006227mg [Citrus clementina])

HSP 1 Score: 149.1 bits (375), Expect = 5.3e-33
Identity = 77/114 (67.54%), Postives = 82/114 (71.93%), Query Frame = 1 

Query: 7   SRTGPPSSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGN-LLTGRAC 66
           +R    SS  L D  SWYCA+ +L LILIGSIR  S +    D    M  GN LL  R C
Sbjct: 7   TRGAASSSATLADAASWYCAIVILALILIGSIRGNSLADEPHDYDHVMRPGNQLLNRRPC 66

Query: 67  DEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIISSHNPPKL 120
           DEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKIIS   P KL
Sbjct: 67  DEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISPSTPRKL 120

[Close]
BLAST of Cp4.1LG14g05920 vs. NCBI nr
Match: gi|643706208|gb|KDP22340.1| (hypothetical protein JCGZ_26171 [Jatropha curcas])

HSP 1 Score: 146.0 bits (367), Expect = 4.4e-32
Identity = 73/103 (70.87%), Postives = 81/103 (78.64%), Query Frame = 1 

Query: 17  LIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGNLLTGRACDEIYVVGEGET 76
           + D  SWYCA+ LLGLIL+GSI+E SSSS +     +  +GN L  R CDEIYVVGEGET
Sbjct: 7   IADAASWYCAIVLLGLILLGSIKEISSSSTA-----EPFKGNQLLDRHCDEIYVVGEGET 66

Query: 77  LHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIISSHNPPKL 120
           LHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKI  S  P KL
Sbjct: 67  LHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKITPS-KPRKL 103

[Close]
BLAST of Cp4.1LG14g05920 vs. NCBI nr
Match: gi|802772738|ref|XP_012090747.1| (PREDICTED: uncharacterized protein LOC105648855 [Jatropha curcas])

HSP 1 Score: 146.0 bits (367), Expect = 4.4e-32
Identity = 73/103 (70.87%), Postives = 81/103 (78.64%), Query Frame = 1 

Query: 17  LIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGNLLTGRACDEIYVVGEGET 76
           + D  SWYCA+ LLGLIL+GSI+E SSSS +     +  +GN L  R CDEIYVVGEGET
Sbjct: 16  IADAASWYCAIVLLGLILLGSIKEISSSSTA-----EPFKGNQLLDRHCDEIYVVGEGET 75

Query: 77  LHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIISSHNPPKL 120
           LHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKI  S  P KL
Sbjct: 76  LHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKITPS-KPRKL 112

The following BLAST results are available for this feature:
BLAST of Cp4.1LG14g05920 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG14g05920 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L5R9_CUCSA4.0e-4081.31Uncharacterized protein OS=Cucumis sativus GN=Csa_3G179200 PE=4 SV=1[more]
V4S410_9ROSI3.7e-3367.54Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006227mg PE=4 SV=1[more]
A0A067EYG4_CITSI3.7e-3367.54Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033289mg PE=4 SV=1[more]
A0A067JQR1_JATCU3.1e-3270.87Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26171 PE=4 SV=1[more]
I3T9A0_LOTJA2.0e-3170.21Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
BLAST of Cp4.1LG14g05920 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G62150.11.2e-2756.73 peptidoglycan-binding LysM domain-containing protein[more]
AT4G25433.14.3e-2554.74 peptidoglycan-binding LysM domain-containing protein[more]
AT3G52790.18.9e-2349.53 peptidoglycan-binding LysM domain-containing protein[more]
BLAST of Cp4.1LG14g05920 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449465170|ref|XP_004150301.1|5.8e-4081.31PREDICTED: uncharacterized protein LOC101210054 [Cucumis sativus][more]
gi|659077342|ref|XP_008439155.1|5.8e-4083.81PREDICTED: uncharacterized protein LOC103484036 [Cucumis melo][more]
gi|567858288|ref|XP_006421827.1|5.3e-3367.54hypothetical protein CICLE_v10006227mg [Citrus clementina][more]
gi|643706208|gb|KDP22340.1|4.4e-3270.87hypothetical protein JCGZ_26171 [Jatropha curcas][more]
gi|802772738|ref|XP_012090747.1|4.4e-3270.87PREDICTED: uncharacterized protein LOC105648855 [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR018392LysM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG14g05920.1Cp4.1LG14g05920.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018392LysM domainPFAMPF01476LysMcoord: 69..110
score: 2.
NoneNo IPR availablePANTHERPTHR33648FAMILY NOT NAMEDcoord: 3..120
score: 4.6
NoneNo IPR availablePANTHERPTHR33648:SF1SUBFAMILY NOT NAMEDcoord: 3..120
score: 4.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG14g05920Cucsa.251100Cucumber (Gy14) v1cgycpeB0673
Cp4.1LG14g05920CmaCh16G001560Cucurbita maxima (Rimu)cmacpeB344
Cp4.1LG14g05920Cla006216Watermelon (97103) v1cpewmB227
Cp4.1LG14g05920Csa3G179200Cucumber (Chinese Long) v2cpecuB214
Cp4.1LG14g05920MELO3C006864Melon (DHL92) v3.5.1cpemeB190
Cp4.1LG14g05920CSPI03G16490Wild cucumber (PI 183967)cpecpiB217
Cp4.1LG14g05920Lsi05G012710Bottle gourd (USVL1VR-Ls)cpelsiB172
Cp4.1LG14g05920MELO3C022526.2Melon (DHL92) v3.6.1cpemedB219
Cp4.1LG14g05920MELO3C006864.2Melon (DHL92) v3.6.1cpemedB233
Cp4.1LG14g05920CsaV3_6G005880Cucumber (Chinese Long) v3cpecucB0281
Cp4.1LG14g05920CsaV3_3G016690Cucumber (Chinese Long) v3cpecucB0257
Cp4.1LG14g05920Bhi01G001004Wax gourdcpewgoB0290
Cp4.1LG14g05920CsGy6G005500Cucumber (Gy14) v2cgybcpeB746
Cp4.1LG14g05920Carg16707Silver-seed gourdcarcpeB1215
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG14g05920Silver-seed gourdcarcpeB0009
Cp4.1LG14g05920Silver-seed gourdcarcpeB0998
Cp4.1LG14g05920Silver-seed gourdcarcpeB1272
Cp4.1LG14g05920Cucurbita pepo (Zucchini)cpecpeB023
Cp4.1LG14g05920Cucurbita pepo (Zucchini)cpecpeB232
Cp4.1LG14g05920Cucurbita pepo (Zucchini)cpecpeB245
Cp4.1LG14g05920Cucurbita maxima (Rimu)cmacpeB425
Cp4.1LG14g05920Cucurbita moschata (Rifu)cmocpeB307
Cp4.1LG14g05920Cucurbita moschata (Rifu)cmocpeB386
Cp4.1LG14g05920Cucurbita moschata (Rifu)cmocpeB557
Cp4.1LG14g05920Wild cucumber (PI 183967)cpecpiB229
Cp4.1LG14g05920Cucumber (Chinese Long) v2cpecuB226
Cp4.1LG14g05920Watermelon (Charleston Gray)cpewcgB202
Cp4.1LG14g05920Watermelon (Charleston Gray)cpewcgB207
Cp4.1LG14g05920Melon (DHL92) v3.5.1cpemeB181
Cp4.1LG14g05920Cucumber (Gy14) v2cgybcpeB327