Carg16707 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg16707
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Peptidoglycan-binding LysM domain-containing protein
Location	Cucurbita_argyrosperma_scaffold_087 : 52980 .. 53354 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCCTGCTCTATACTTCCAGAACTGGGCCACCCTCTTCGCGACTCCTAATCGACGTCGTTTCCTGGTACTGCGCCCTCGCCCTCTTGGGCCTCATTCTCATCGGCTCTATCAGAGAAACCTCCTCCTCCTCCGCCTCCGCTGACGACGGTGGCCAGATGCTCAGAGGAAACTTGCTGACGGGGCGGGCCTGCGATGAGATTTACGTTGTCGGAGAAGGAGAAACGCTGCACACGATTAGCGACAAGTGCGGTGACCCGTATATCGTGGAGCGGAACCCGCATATCCATGACCCGGATGACGTCTTCCCCGGTTTGGTAATCAAAATCATCTCCTCCCACAACCCTCCCAAGTTGGGATTCCAAACCGGTTAA

mRNA sequence

ATGCCCCTGCTCTATACTTCCAGAACTGGGCCACCCTCTTCGCGACTCCTAATCGACGTCGTTTCCTGGTACTGCGCCCTCGCCCTCTTGGGCCTCATTCTCATCGGCTCTATCAGAGAAACCTCCTCCTCCTCCGCCTCCGCTGACGACGGTGGCCAGATGCTCAGAGGAAACTTGCTGACGGGGCGGGCCTGCGATGAGATTTACGTTGTCGGAGAAGGAGAAACGCTGCACACGATTAGCGACAAGTGCGGTGACCCGTATATCGTGGAGCGGAACCCGCATATCCATGACCCGGATGACGTCTTCCCCGGTTTGGTAATCAAAATCATCTCCTCCCACAACCCTCCCAAGTTGGGATTCCAAACCGGTTAA

Coding sequence (CDS)

ATGCCCCTGCTCTATACTTCCAGAACTGGGCCACCCTCTTCGCGACTCCTAATCGACGTCGTTTCCTGGTACTGCGCCCTCGCCCTCTTGGGCCTCATTCTCATCGGCTCTATCAGAGAAACCTCCTCCTCCTCCGCCTCCGCTGACGACGGTGGCCAGATGCTCAGAGGAAACTTGCTGACGGGGCGGGCCTGCGATGAGATTTACGTTGTCGGAGAAGGAGAAACGCTGCACACGATTAGCGACAAGTGCGGTGACCCGTATATCGTGGAGCGGAACCCGCATATCCATGACCCGGATGACGTCTTCCCCGGTTTGGTAATCAAAATCATCTCCTCCCACAACCCTCCCAAGTTGGGATTCCAAACCGGTTAA

Protein sequence

MPLLYTSRTGPPSSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGNLLTGRACDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIISSHNPPKLGFQTG

Homology

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BLAST of Carg16707 vs. NCBI nr
Match: XP_022985106.1 (uncharacterized protein LOC111483184 [Cucurbita maxima])

HSP 1 Score: 242.7 bits (618), Expect = 6.8e-61
Identity = 119/124 (95.97%), Postives = 121/124 (97.58%), Query Frame = 0


Query: 1   MPLLYTSRTGPPSSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGNLL 60
           MPLLYTSRT PPSSRLLIDVVSWYCA+A+LGLILIGSIRET SSSASADDG QMLRGNLL
Sbjct: 1   MPLLYTSRTEPPSSRLLIDVVSWYCAVAILGLILIGSIRET-SSSASADDGSQMLRGNLL 60

Query: 61  TGRACDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIISSHNPPKLG 120
           TGRACDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIISSHNPPKLG
Sbjct: 61  TGRACDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIISSHNPPKLG 120

Query: 121 FQTG 125
           FQTG
Sbjct: 121 FQTG 123

[Close]

BLAST of Carg16707 vs. NCBI nr
Match: XP_022157015.1 (uncharacterized protein LOC111023841 [Momordica charantia])

HSP 1 Score: 181.4 bits (459), Expect = 1.9e-42
Identity = 87/116 (75.00%), Postives = 99/116 (85.34%), Query Frame = 0


Query: 8   RTGPPSSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGNLLTGRACDE 67
           R+G PSSR   DVVSWYCA+ +L LILIGSIRE++ S+ +ADD G++ RGNL+ GR CDE
Sbjct: 10  RSGAPSSRPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADD-GRLARGNLVRGRPCDE 69

Query: 68  IYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIISSHNPPKLGFQT 124
           IYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKIISS NP   G +T
Sbjct: 70  IYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSNPSNSGLET 124

[Close]

BLAST of Carg16707 vs. NCBI nr
Match: XP_004150301.1 (PREDICTED: uncharacterized protein LOC101210054 [Cucumis sativus] >KGN57330.1 hypothetical protein Csa_3G179200 [Cucumis sativus])

HSP 1 Score: 172.2 bits (435), Expect = 1.1e-39
Identity = 87/107 (81.31%), Postives = 92/107 (85.98%), Query Frame = 0


Query: 7   SRTGPPSSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGNLLTGRACD 66
           SR    SSR LIDVVSWYCA+ LLGLILIGSIRETSSS       G++LRGNL+T R CD
Sbjct: 9   SRRPQSSSRPLIDVVSWYCAVGLLGLILIGSIRETSSSG-----DGRLLRGNLVTWRPCD 68

Query: 67  EIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIISS 114
           EIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKII+S
Sbjct: 69  EIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIIAS 110

[Close]

BLAST of Carg16707 vs. NCBI nr
Match: XP_008439155.1 (PREDICTED: uncharacterized protein LOC103484036 [Cucumis melo])

HSP 1 Score: 172.2 bits (435), Expect = 1.1e-39
Identity = 88/105 (83.81%), Postives = 93/105 (88.57%), Query Frame = 0


Query: 13  SSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGNLLTGRACDEIYVVG 72
           SSR LIDVVSWYCA+ LLGLILIGSIRETSSSS    D G+ LRGNL+T R CDEIYVVG
Sbjct: 17  SSRPLIDVVSWYCAVGLLGLILIGSIRETSSSSG---DQGRSLRGNLVTWRPCDEIYVVG 76

Query: 73  EGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKII--SSHN 116
           EGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKII  S+HN
Sbjct: 77  EGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIASSTHN 118

[Close]

BLAST of Carg16707 vs. NCBI nr
Match: ESR35067.1 (hypothetical protein CICLE_v10006227mg [Citrus clementina] >KDO60138.1 hypothetical protein CISIN_1g033289mg [Citrus sinensis] >GAY41268.1 hypothetical protein CUMW_058110 [Citrus unshiu])

HSP 1 Score: 149.1 bits (375), Expect = 1.0e-32
Identity = 77/114 (67.54%), Postives = 82/114 (71.93%), Query Frame = 0


Query: 7   SRTGPPSSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGN-LLTGRAC 66
           +R    SS  L D  SWYCA+ +L LILIGSIR  S +    D    M  GN LL  R C
Sbjct: 7   TRGAASSSATLADAASWYCAIVILALILIGSIRGNSLADEPHDYDHVMRPGNQLLNRRPC 66

Query: 67  DEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIISSHNPPKL 120
           DEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKIIS   P KL
Sbjct: 67  DEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISPSTPRKL 120

[Close]

BLAST of Carg16707 vs. TAIR10
Match: AT5G62150.1 (peptidoglycan-binding LysM domain-containing protein)

HSP 1 Score: 119.8 bits (299), Expect = 1.2e-27
Identity = 59/104 (56.73%), Postives = 76/104 (73.08%), Query Frame = 0


Query: 7   SRTGPPSSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGNLLTGRACD 66
           SRTG        D+ +W  A+ LL LIL+ S+RE ++S++        +RG+  + + C+
Sbjct: 4   SRTGSS------DMSAWCSAVVLLSLILLLSVRENNASNS--------IRGSQFSTKPCE 63

Query: 67  EIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKI 111
           EIY+VGEGETLHTI DKCGDP+IVERNPHIHDPDDVFPGLV+KI
Sbjct: 64  EIYIVGEGETLHTIGDKCGDPFIVERNPHIHDPDDVFPGLVLKI 93

[Close]

BLAST of Carg16707 vs. TAIR10
Match: AT4G25433.1 (peptidoglycan-binding LysM domain-containing protein)

HSP 1 Score: 111.3 bits (277), Expect = 4.3e-25
Identity = 52/95 (54.74%), Postives = 71/95 (74.74%), Query Frame = 0


Query: 19  DVVSWYCALALLGLILIGSIRETSSSSASADDGG---QMLRGNLLTGRACDEIYVVGEGE 78
           + V+ YC +ALL L L GS++ ++   +     G   ++ RG  +  R C+E+YVVGEG+
Sbjct: 10  NTVASYCLVALLILTLAGSVKNSNGGGSGEYYRGRNCEVWRGKQMMERPCEELYVVGEGD 69

Query: 79  TLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKI 111
           TLH+IS+KCGDP+IVERNPHIHDPDDVFPGL+IK+
Sbjct: 70  TLHSISEKCGDPFIVERNPHIHDPDDVFPGLLIKL 104

[Close]

BLAST of Carg16707 vs. TAIR10
Match: AT3G52790.1 (peptidoglycan-binding LysM domain-containing protein)

HSP 1 Score: 103.6 bits (257), Expect = 8.9e-23
Identity = 53/107 (49.53%), Postives = 67/107 (62.62%), Query Frame = 0


Query: 10  GPPSSRLLIDVVSWYCALALLGLILIGSI---RETSSSSASADDGGQMLRGNLLTGRACD 69
           G  SS  + + +SWYCA+    ++L+ S    +E S+          M+ G      ACD
Sbjct: 2   GKSSSMAVAEKISWYCAVFAAMMLLMNSFQVAQEGSTEIVEKQQPSMMITGYSHRRPACD 61

Query: 70  EIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIISS 114
           EIY V EGETL TIS+KCGDPYIVE NPHIHD DD+FPGL+I+I  S
Sbjct: 62  EIYEVKEGETLQTISEKCGDPYIVEGNPHIHDHDDLFPGLLIRITPS 108

[Close]

BLAST of Carg16707 vs. TrEMBL
Match: tr|A0A1S3AXP2|A0A1S3AXP2_CUCME (uncharacterized protein LOC103484036 OS=Cucumis melo OX=3656 GN=LOC103484036 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 7.5e-40
Identity = 88/105 (83.81%), Postives = 93/105 (88.57%), Query Frame = 0


Query: 13  SSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGNLLTGRACDEIYVVG 72
           SSR LIDVVSWYCA+ LLGLILIGSIRETSSSS    D G+ LRGNL+T R CDEIYVVG
Sbjct: 17  SSRPLIDVVSWYCAVGLLGLILIGSIRETSSSSG---DQGRSLRGNLVTWRPCDEIYVVG 76

Query: 73  EGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKII--SSHN 116
           EGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKII  S+HN
Sbjct: 77  EGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIASSTHN 118

[Close]

BLAST of Carg16707 vs. TrEMBL
Match: tr|A0A0A0L5R9|A0A0A0L5R9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G179200 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 7.5e-40
Identity = 87/107 (81.31%), Postives = 92/107 (85.98%), Query Frame = 0


Query: 7   SRTGPPSSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGNLLTGRACD 66
           SR    SSR LIDVVSWYCA+ LLGLILIGSIRETSSS       G++LRGNL+T R CD
Sbjct: 9   SRRPQSSSRPLIDVVSWYCAVGLLGLILIGSIRETSSSG-----DGRLLRGNLVTWRPCD 68

Query: 67  EIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIISS 114
           EIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKII+S
Sbjct: 69  EIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIIAS 110

[Close]

BLAST of Carg16707 vs. TrEMBL
Match: tr|V4S410|V4S410_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10006227mg PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 6.8e-33
Identity = 77/114 (67.54%), Postives = 82/114 (71.93%), Query Frame = 0


Query: 7   SRTGPPSSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGN-LLTGRAC 66
           +R    SS  L D  SWYCA+ +L LILIGSIR  S +    D    M  GN LL  R C
Sbjct: 7   TRGAASSSATLADAASWYCAIVILALILIGSIRGNSLADEPHDYDHVMRPGNQLLNRRPC 66

Query: 67  DEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIISSHNPPKL 120
           DEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKIIS   P KL
Sbjct: 67  DEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISPSTPRKL 120

[Close]

BLAST of Carg16707 vs. TrEMBL
Match: tr|A0A2H5NM66|A0A2H5NM66_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_058110 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 6.8e-33
Identity = 77/114 (67.54%), Postives = 82/114 (71.93%), Query Frame = 0


Query: 7   SRTGPPSSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGN-LLTGRAC 66
           +R    SS  L D  SWYCA+ +L LILIGSIR  S +    D    M  GN LL  R C
Sbjct: 7   TRGAASSSATLADAASWYCAIVILALILIGSIRGNSLADEPHDYDHVMRPGNQLLNRRPC 66

Query: 67  DEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIISSHNPPKL 120
           DEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKIIS   P KL
Sbjct: 67  DEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISPSTPRKL 120

[Close]

BLAST of Carg16707 vs. TrEMBL
Match: tr|A0A067EYG4|A0A067EYG4_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g033289mg PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 6.8e-33
Identity = 77/114 (67.54%), Postives = 82/114 (71.93%), Query Frame = 0


Query: 7   SRTGPPSSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGN-LLTGRAC 66
           +R    SS  L D  SWYCA+ +L LILIGSIR  S +    D    M  GN LL  R C
Sbjct: 7   TRGAASSSATLADAASWYCAIVILALILIGSIRGNSLADEPHDYDHVMRPGNQLLNRRPC 66

Query: 67  DEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIISSHNPPKL 120
           DEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKIIS   P KL
Sbjct: 67  DEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISPSTPRKL 120

The following BLAST results are available for this feature:

BLAST of Carg16707 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022985106.1	6.8e-61	95.97	uncharacterized protein LOC111483184 [Cucurbita maxima]	[more]
XP_022157015.1	1.9e-42	75.00	uncharacterized protein LOC111023841 [Momordica charantia]	[more]
XP_004150301.1	1.1e-39	81.31	PREDICTED: uncharacterized protein LOC101210054 [Cucumis sativus] >KGN57330.1 hy...	[more]
XP_008439155.1	1.1e-39	83.81	PREDICTED: uncharacterized protein LOC103484036 [Cucumis melo]	[more]
ESR35067.1	1.0e-32	67.54	hypothetical protein CICLE_v10006227mg [Citrus clementina] >KDO60138.1 hypotheti...	[more]

BLAST of Carg16707 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G62150.1	1.2e-27	56.73	peptidoglycan-binding LysM domain-containing protein	[more]
AT4G25433.1	4.3e-25	54.74	peptidoglycan-binding LysM domain-containing protein	[more]
AT3G52790.1	8.9e-23	49.53	peptidoglycan-binding LysM domain-containing protein	[more]

BLAST of Carg16707 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg16707 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AXP2\|A0A1S3AXP2_CUCME	7.5e-40	83.81	uncharacterized protein LOC103484036 OS=Cucumis melo OX=3656 GN=LOC103484036 PE=...	[more]
tr\|A0A0A0L5R9\|A0A0A0L5R9_CUCSA	7.5e-40	81.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G179200 PE=4 SV=1	[more]
tr\|V4S410\|V4S410_9ROSI	6.8e-33	67.54	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10006227mg PE=4 ...	[more]
tr\|A0A2H5NM66\|A0A2H5NM66_CITUN	6.8e-33	67.54	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_058110 PE=4 SV=1	[more]
tr\|A0A067EYG4\|A0A067EYG4_CITSI	6.8e-33	67.54	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g033289mg PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR018392	LysM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16707-RA	Carg16707-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018392	LysM domain	PFAM	PF01476	LysM	coord: 69..110 e-value: 2.2E-4 score: 21.1
IPR018392	LysM domain	CDD	cd00118	LysM	coord: 68..110 e-value: 1.68782E-5 score: 37.4649
None	No IPR available	PANTHER	PTHR33648	FAMILY NOT NAMED	coord: 17..115
None	No IPR available	PANTHER	PTHR33648:SF1	SUBFAMILY NOT NAMED	coord: 17..115

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg16707	Cla006216	Watermelon (97103) v1	carwmB0874
Carg16707	Csa3G179200	Cucumber (Chinese Long) v2	carcuB0885
Carg16707	MELO3C006864	Melon (DHL92) v3.5.1	carmeB0859
Carg16707	CSPI03G16490	Wild cucumber (PI 183967)	carcpiB0905
Carg16707	Cucsa.251100	Cucumber (Gy14) v1	carcgyB0993
Carg16707	CmaCh16G001560	Cucurbita maxima (Rimu)	carcmaB1206
Carg16707	Lsi05G012710	Bottle gourd (USVL1VR-Ls)	carlsiB791
Carg16707	Cp4.1LG14g05920	Cucurbita pepo (Zucchini)	carcpeB1215
Carg16707	MELO3C006864.2	Melon (DHL92) v3.6.1	carmedB0869
Carg16707	CsaV3_3G016690	Cucumber (Chinese Long) v3	carcucB0909
Carg16707	Cla97C05G089680	Watermelon (97103) v2	carwmbB0910
Carg16707	Bhi01G001004	Wax gourd	carwgoB1017

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg16707	Silver-seed gourd	carcarB005
Carg16707	Cucumber (Gy14) v2	carcgybB0859
Carg16707	Cucurbita maxima (Rimu)	carcmaB1208
Carg16707	Cucurbita moschata (Rifu)	carcmoB1175
Carg16707	Cucurbita moschata (Rifu)	carcmoB1176
Carg16707	Cucurbita pepo (Zucchini)	carcpeB1214
Carg16707	Watermelon (Charleston Gray)	carwcgB0847
Carg16707	Watermelon (97103) v1	carwmB0875