Bhi01M001004 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi01M001004
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	Peptidoglycan-binding LysM domain-containing protein
Location	chr1 : 27702756 .. 27704029 (+)
Sequence length	1274

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCAAATATTTAAAAAATCAAGAATCTACTGAAAGATATATATAGATATGTATAAAATAAGGAGAAGGTGAAAGGAAGGTAAAATTGAACCTCAAAAGTAATGTAGAATAATAAATATATAGTTAGGTCCTTATTAGTAATTAGAAAGAGTATGTATATTATAATGGTTTTGCCGTTTGGGAGAAATTGAGACAAGTTGAAACCAATCCAAAATGTAGAACACAAGTGGACGTAAGCTCAACGTCCCAACCAAAATCCCTCTTTTAACTTTTCTTCTCTCTTATCATAAACTAAAACCACTTTATAAATACTTACTTTAATTTCTCCATCTCCATTTCATTTTAAACTCTCTTTCTCAAAAATAAAAGAAACAAAAAACAAAAAATCCACCACCATGCCCCGCGTCTCTATTTGCAGAAGTAGGCCACAGTCTTCACGAACCCTAATCGACGCCGTCTCCTGGTACTGCGCCGTCGGCCTGTTGGGCCTGATCTTGATTGGGTCCATCAGAGAAACTTCGTCCTCTTCCTCCTCCTCCGATGACCGGTTGCTGATCAGAGGGAACTTGGAGACGGGGCGGCCGTGCGATGAGATTTATGTGGTGGGAGAAGGAGAAACGCTTCACACCATTAGCGACAAGTGCGGTGACCCGTTTATCGTGGAGCGGAACCCGCATATCCATGACCCGGATGATGTCTTCCCCGGTTTGGTTATTAAAATTATCGCCTCCCATAAACCTTCCAACTTCGGATTAATCCAACCTGCTTAATTTTCATCCTTTTCTCTTTTTTTTTTTTTTTTTTTTCTAAATAATTTCCAATTTCCAAACCAATAATTTAAACTCTTCCCGGAGTTTTCAGGCAAATTTATACCCCCACCCCAAAATATATACATATATATAAGCTTTAGATTTTTTTGGAATTATAATTTCCCAGACACAGACTTGTATGTATTTTCTTTCTCAGGGATATAGAGGTAAAATATGGCTCATCATCTTTCTCTTGTATGTACAAATATCCTAATTAATATATATATATATTTAAGAGAAAGAATATGTCTATTTGTAATTTGTCTTTTTTCTTTCTTTTATTTTTTATTTTTACTTTCAAATATCTAAATTTAATAAACAAAATATATATGAACTATGGTCATTTCAACAGTAACTCGCATTTTTACGGTAGCTCAATTTTTCTAAATATTGCTTTTCAAAGGTAATAAATTATAGTTAATTTTTATGCTGTAAGCTCTTATATGACTTGATTGGCCTACTCCTA

mRNA sequence

ATCAAATATTTAAAAAATCAAGAATCTACTGAAAGATATATATAGATATGTATAAAATAAGGAGAAGGTGAAAGGAAGGTAAAATTGAACCTCAAAAGTAATGTAGAATAATAAATATATAGTTAGGTCCTTATTAGTAATTAGAAAGAGTATGTATATTATAATGGTTTTGCCGTTTGGGAGAAATTGAGACAAGTTGAAACCAATCCAAAATGTAGAACACAAGTGGACGTAAGCTCAACGTCCCAACCAAAATCCCTCTTTTAACTTTTCTTCTCTCTTATCATAAACTAAAACCACTTTATAAATACTTACTTTAATTTCTCCATCTCCATTTCATTTTAAACTCTCTTTCTCAAAAATAAAAGAAACAAAAAACAAAAAATCCACCACCATGCCCCGCGTCTCTATTTGCAGAAGTAGGCCACAGTCTTCACGAACCCTAATCGACGCCGTCTCCTGGTACTGCGCCGTCGGCCTGTTGGGCCTGATCTTGATTGGGTCCATCAGAGAAACTTCGTCCTCTTCCTCCTCCTCCGATGACCGGTTGCTGATCAGAGGGAACTTGGAGACGGGGCGGCCGTGCGATGAGATTTATGTGGTGGGAGAAGGAGAAACGCTTCACACCATTAGCGACAAGTGCGGTGACCCGTTTATCGTGGAGCGGAACCCGCATATCCATGACCCGGATGATGTCTTCCCCGGTTTGGTTATTAAAATTATCGCCTCCCATAAACCTTCCAACTTCGGATTAATCCAACCTGCTTAATTTTCATCCTTTTCTCTTTTTTTTTTTTTTTTTTTTCTAAATAATTTCCAATTTCCAAACCAATAATTTAAACTCTTCCCGGAGTTTTCAGGCAAATTTATACCCCCACCCCAAAATATATACATATATATAAGCTTTAGATTTTTTTGGAATTATAATTTCCCAGACACAGACTTGTATGTATTTTCTTTCTCAGGGATATAGAGGTAAAATATGGCTCATCATCTTTCTCTTGTATGTACAAATATCCTAATTAATATATATATATATTTAAGAGAAAGAATATGTCTATTTGTAATTTGTCTTTTTTCTTTCTTTTATTTTTTATTTTTACTTTCAAATATCTAAATTTAATAAACAAAATATATATGAACTATGGTCATTTCAACAGTAACTCGCATTTTTACGGTAGCTCAATTTTTCTAAATATTGCTTTTCAAAGGTAATAAATTATAGTTAATTTTTATGCTGTAAGCTCTTATATGACTTGATTGGCCTACTCCTA

Coding sequence (CDS)

ATGCCCCGCGTCTCTATTTGCAGAAGTAGGCCACAGTCTTCACGAACCCTAATCGACGCCGTCTCCTGGTACTGCGCCGTCGGCCTGTTGGGCCTGATCTTGATTGGGTCCATCAGAGAAACTTCGTCCTCTTCCTCCTCCTCCGATGACCGGTTGCTGATCAGAGGGAACTTGGAGACGGGGCGGCCGTGCGATGAGATTTATGTGGTGGGAGAAGGAGAAACGCTTCACACCATTAGCGACAAGTGCGGTGACCCGTTTATCGTGGAGCGGAACCCGCATATCCATGACCCGGATGATGTCTTCCCCGGTTTGGTTATTAAAATTATCGCCTCCCATAAACCTTCCAACTTCGGATTAATCCAACCTGCTTAA

Protein sequence

MPRVSICRSRPQSSRTLIDAVSWYCAVGLLGLILIGSIRETSSSSSSSDDRLLIRGNLETGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIASHKPSNFGLIQPA

Homology

[Close]

BLAST of Bhi01M001004 vs. TAIR10
Match: AT5G62150.1 (peptidoglycan-binding LysM domain-containing protein)

HSP 1 Score: 118.2 bits (295), Expect = 3.5e-27
Identity = 58/91 (63.74%), Postives = 67/91 (73.63%), Query Frame = 0


Query: 19  DAVSWYCAVGLLGLILIGSIRETXXXXXXXXXRLLIRGNLETGRPCDEIYVVGEGETLHT 78
           D  +W  AV LL LIL+ S+RE             IRG+  + +PC+EIY+VGEGETLHT
Sbjct: 10  DMSAWCSAVVLLSLILLLSVRENNASNS-------IRGSQFSTKPCEEIYIVGEGETLHT 69

Query: 79  ISDKCGDPFIVERNPHIHDPDDVFPGLVIKI 110
           I DKCGDPFIVERNPHIHDPDDVFPGLV+KI
Sbjct: 70  IGDKCGDPFIVERNPHIHDPDDVFPGLVLKI 93

[Close]

BLAST of Bhi01M001004 vs. TAIR10
Match: AT4G25433.1 (peptidoglycan-binding LysM domain-containing protein)

HSP 1 Score: 111.7 bits (278), Expect = 3.3e-25
Identity = 59/113 (52.21%), Postives = 74/113 (65.49%), Query Frame = 0


Query: 1   MPRVSICRSRPQSSRTLIDAVSWYCAVGLLGLILIGSIRETXXXXXXXXXR----LLIRG 60
           M RV++ RS         + V+ YC V LL L L GS++ +         R     + RG
Sbjct: 1   MIRVTVSRS---------NTVASYCLVALLILTLAGSVKNSNGGGSGEYYRGRNCEVWRG 60

Query: 61  NLETGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKI 110
                RPC+E+YVVGEG+TLH+IS+KCGDPFIVERNPHIHDPDDVFPGL+IK+
Sbjct: 61  KQMMERPCEELYVVGEGDTLHSISEKCGDPFIVERNPHIHDPDDVFPGLLIKL 104

[Close]

BLAST of Bhi01M001004 vs. TAIR10
Match: AT3G52790.1 (peptidoglycan-binding LysM domain-containing protein)

HSP 1 Score: 97.8 bits (242), Expect = 4.9e-21
Identity = 49/104 (47.12%), Postives = 64/104 (61.54%), Query Frame = 0


Query: 13  SSRTLIDAVSWYCAVGLLGLILIGSIRETXXXXXXXXXR----LLIRGNLETGRPCDEIY 72
           SS  + + +SWYCAV    ++L+ S +           +    ++I G       CDEIY
Sbjct: 5   SSMAVAEKISWYCAVFAAMMLLMNSFQVAQEGSTEIVEKQQPSMMITGYSHRRPACDEIY 64

Query: 73  VVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIAS 113
            V EGETL TIS+KCGDP+IVE NPHIHD DD+FPGL+I+I  S
Sbjct: 65  EVKEGETLQTISEKCGDPYIVEGNPHIHDHDDLFPGLLIRITPS 108

[Close]

BLAST of Bhi01M001004 vs. TrEMBL
Match: tr|A0A1S3AXP2|A0A1S3AXP2_CUCME (uncharacterized protein LOC103484036 OS=Cucumis melo OX=3656 GN=LOC103484036 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 6.7e-41
Identity = 95/121 (78.51%), Postives = 96/121 (79.34%), Query Frame = 0


Query: 1   MPRVSICRS-RPQ---SSRTLIDAVSWYCAVGLLGLILIGSIRETXXXXXXXXXRLLIRG 60
           MP VSI RS RPQ   SSR LID VSWYCAVGLLGLILIGSIRET          L  RG
Sbjct: 1   MPGVSIPRSRRPQYSSSSRPLIDVVSWYCAVGLLGLILIGSIRETSSSSGDQGRSL--RG 60

Query: 61  NLETGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIASHKPS 118
           NL T RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIAS   +
Sbjct: 61  NLVTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIASSTHN 119

[Close]

BLAST of Bhi01M001004 vs. TrEMBL
Match: tr|A0A0A0L5R9|A0A0A0L5R9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G179200 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.0e-40
Identity = 92/114 (80.70%), Postives = 95/114 (83.33%), Query Frame = 0


Query: 1   MPRVSICRS-RPQ-SSRTLIDAVSWYCAVGLLGLILIGSIRETXXXXXXXXXRLLIRGNL 60
           MP VS+ RS RPQ SSR LID VSWYCAVGLLGLILIGSIRET           L+RGNL
Sbjct: 1   MPGVSVPRSRRPQSSSRPLIDVVSWYCAVGLLGLILIGSIRETSSSGDGR----LLRGNL 60

Query: 61  ETGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIAS 113
            T RPCDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKIIAS
Sbjct: 61  VTWRPCDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIIAS 110

[Close]

BLAST of Bhi01M001004 vs. TrEMBL
Match: tr|A0A2N9FVG3|A0A2N9FVG3_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS18841 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 5.7e-32
Identity = 70/106 (66.04%), Postives = 80/106 (75.47%), Query Frame = 0


Query: 12  QSSRTLIDAVSWYCAVGLLGLILIGSIRETXXXXXXXXXRLLIRGNLETGRPCDEIYVVG 71
           ++S ++ D+ SWYCA+ LLGLIL+ SIRE+            +RGN    RPCDEIYVVG
Sbjct: 2   KASISIADSASWYCAITLLGLILLASIRESSVTDDQ-----TVRGNQFLNRPCDEIYVVG 61

Query: 72  EGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIASHKPSN 118
           EGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKII   +  N
Sbjct: 62  EGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIITPSQDKN 102

[Close]

BLAST of Bhi01M001004 vs. TrEMBL
Match: tr|A0A1Q3B223|A0A1Q3B223_CEPFO (LysM domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_05358 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 7.5e-32
Identity = 72/101 (71.29%), Postives = 78/101 (77.23%), Query Frame = 0


Query: 12  QSSRTLIDAVSWYCAVGLLGLILIGSIRETXXXXXXXXXRLLIRGNLETGRPCDEIYVVG 71
           +SS ++ DA SWYCAV LL LIL+GSIRE+            +RGN    RPCDEIYVVG
Sbjct: 14  KSSVSITDAASWYCAVVLLALILVGSIRESYIPEEP------VRGNQFLNRPCDEIYVVG 73

Query: 72  EGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIAS 113
           EGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKI  S
Sbjct: 74  EGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKITPS 108

[Close]

BLAST of Bhi01M001004 vs. TrEMBL
Match: tr|V4S410|V4S410_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10006227mg PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.7e-31
Identity = 75/110 (68.18%), Postives = 80/110 (72.73%), Query Frame = 0


Query: 8   RSRPQSSRTLIDAVSWYCAVGLLGLILIGSIRETXXXXXXXXXRLLIR-GN-LETGRPCD 67
           R    SS TL DA SWYCA+ +L LILIGSIR             ++R GN L   RPCD
Sbjct: 8   RGAASSSATLADAASWYCAIVILALILIGSIRGNSLADEPHDYDHVMRPGNQLLNRRPCD 67

Query: 68  EIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIASHKP 116
           EIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKII+   P
Sbjct: 68  EIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISPSTP 117

[Close]

BLAST of Bhi01M001004 vs. NCBI nr
Match: XP_022985106.1 (uncharacterized protein LOC111483184 [Cucurbita maxima])

HSP 1 Score: 180.6 bits (457), Expect = 3.2e-42
Identity = 86/119 (72.27%), Postives = 93/119 (78.15%), Query Frame = 0


Query: 1   MPRVSICRSRPQSSRTLIDAVSWYCAVGLLGLILIGSIRETXXXXXXXXXRLLIRGNLET 60
           MP +   R+ P SSR LID VSWYCAV +LGLILIGSIRET           ++RGNL T
Sbjct: 1   MPLLYTSRTEPPSSRLLIDVVSWYCAVAILGLILIGSIRETSSSASADDGSQMLRGNLLT 60

Query: 61  GRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIASHKPSNFG 120
           GR CDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKII+SH P   G
Sbjct: 61  GRACDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIISSHNPPKLG 119

[Close]

BLAST of Bhi01M001004 vs. NCBI nr
Match: XP_008439155.1 (PREDICTED: uncharacterized protein LOC103484036 [Cucumis melo])

HSP 1 Score: 175.6 bits (444), Expect = 1.0e-40
Identity = 95/121 (78.51%), Postives = 96/121 (79.34%), Query Frame = 0


Query: 1   MPRVSICRS-RPQ---SSRTLIDAVSWYCAVGLLGLILIGSIRETXXXXXXXXXRLLIRG 60
           MP VSI RS RPQ   SSR LID VSWYCAVGLLGLILIGSIRET          L  RG
Sbjct: 1   MPGVSIPRSRRPQYSSSSRPLIDVVSWYCAVGLLGLILIGSIRETSSSSGDQGRSL--RG 60

Query: 61  NLETGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIASHKPS 118
           NL T RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIAS   +
Sbjct: 61  NLVTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIASSTHN 119

[Close]

BLAST of Bhi01M001004 vs. NCBI nr
Match: XP_004150301.1 (PREDICTED: uncharacterized protein LOC101210054 [Cucumis sativus] >KGN57330.1 hypothetical protein Csa_3G179200 [Cucumis sativus])

HSP 1 Score: 174.1 bits (440), Expect = 3.0e-40
Identity = 92/114 (80.70%), Postives = 95/114 (83.33%), Query Frame = 0


Query: 1   MPRVSICRS-RPQ-SSRTLIDAVSWYCAVGLLGLILIGSIRETXXXXXXXXXRLLIRGNL 60
           MP VS+ RS RPQ SSR LID VSWYCAVGLLGLILIGSIRET           L+RGNL
Sbjct: 1   MPGVSVPRSRRPQSSSRPLIDVVSWYCAVGLLGLILIGSIRETSSSGDGR----LLRGNL 60

Query: 61  ETGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIAS 113
            T RPCDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKIIAS
Sbjct: 61  VTWRPCDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIIAS 110

[Close]

BLAST of Bhi01M001004 vs. NCBI nr
Match: XP_022157015.1 (uncharacterized protein LOC111023841 [Momordica charantia])

HSP 1 Score: 172.9 bits (437), Expect = 6.6e-40
Identity = 85/113 (75.22%), Postives = 88/113 (77.88%), Query Frame = 0


Query: 8   RSRPQSSRTLIDAVSWYCAVGLLGLILIGSIRETXXXXXXXXXRLLIRGNLETGRPCDEI 67
           RS   SSR   D VSWYCAVG+L LILIGSIRE+           L RGNL  GRPCDEI
Sbjct: 10  RSGAPSSRPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRLARGNLVRGRPCDEI 69

Query: 68  YVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIASHKPSNFGL 121
           YVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKII+S  PSN GL
Sbjct: 70  YVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSNPSNSGL 122

[Close]

BLAST of Bhi01M001004 vs. NCBI nr
Match: GAV61832.1 (LysM domain-containing protein [Cephalotus follicularis])

HSP 1 Score: 145.6 bits (366), Expect = 1.1e-31
Identity = 72/101 (71.29%), Postives = 78/101 (77.23%), Query Frame = 0


Query: 12  QSSRTLIDAVSWYCAVGLLGLILIGSIRETXXXXXXXXXRLLIRGNLETGRPCDEIYVVG 71
           +SS ++ DA SWYCAV LL LIL+GSIRE+            +RGN    RPCDEIYVVG
Sbjct: 14  KSSVSITDAASWYCAVVLLALILVGSIRESYIPEEP------VRGNQFLNRPCDEIYVVG 73

Query: 72  EGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIAS 113
           EGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKI  S
Sbjct: 74  EGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKITPS 108

The following BLAST results are available for this feature:

BLAST of Bhi01M001004 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G62150.1	3.5e-27	63.74	peptidoglycan-binding LysM domain-containing protein	[more]
AT4G25433.1	3.3e-25	52.21	peptidoglycan-binding LysM domain-containing protein	[more]
AT3G52790.1	4.9e-21	47.12	peptidoglycan-binding LysM domain-containing protein	[more]

BLAST of Bhi01M001004 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi01M001004 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AXP2\|A0A1S3AXP2_CUCME	6.7e-41	78.51	uncharacterized protein LOC103484036 OS=Cucumis melo OX=3656 GN=LOC103484036 PE=...	[more]
tr\|A0A0A0L5R9\|A0A0A0L5R9_CUCSA	2.0e-40	80.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G179200 PE=4 SV=1	[more]
tr\|A0A2N9FVG3\|A0A2N9FVG3_FAGSY	5.7e-32	66.04	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS18841 PE=4 SV=1	[more]
tr\|A0A1Q3B223\|A0A1Q3B223_CEPFO	7.5e-32	71.29	LysM domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_053...	[more]
tr\|V4S410\|V4S410_9ROSI	1.7e-31	68.18	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10006227mg PE=4 ...	[more]

BLAST of Bhi01M001004 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022985106.1	3.2e-42	72.27	uncharacterized protein LOC111483184 [Cucurbita maxima]	[more]
XP_008439155.1	1.0e-40	78.51	PREDICTED: uncharacterized protein LOC103484036 [Cucumis melo]	[more]
XP_004150301.1	3.0e-40	80.70	PREDICTED: uncharacterized protein LOC101210054 [Cucumis sativus] >KGN57330.1 hy...	[more]
XP_022157015.1	6.6e-40	75.22	uncharacterized protein LOC111023841 [Momordica charantia]	[more]
GAV61832.1	1.1e-31	71.29	LysM domain-containing protein [Cephalotus follicularis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR018392	LysM_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi01G001004	Bhi01G001004	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi01M001004.utr5p1	Bhi01M001004.utr5p1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi01M001004.exon1	Bhi01M001004.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi01M001004	cds.Bhi01M001004	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi01M001004.utr3p1	Bhi01M001004.utr3p1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi01M001004	Bhi01M001004-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018392	LysM domain	PFAM	PF01476	LysM	coord: 68..109 e-value: 2.1E-4 score: 21.2
IPR018392	LysM domain	CDD	cd00118	LysM	coord: 67..109 e-value: 4.53337E-5 score: 36.3093
None	No IPR available	PANTHER	PTHR33648	FAMILY NOT NAMED	coord: 12..114
None	No IPR available	PANTHER	PTHR33648:SF1	SUBFAMILY NOT NAMED	coord: 12..114