Variant detail of Cla97Chr04:15443616 [Watermelon resequencing (SNP v3)]
| variant ID | Cla97Chr04_15443616 | |||||
| Genome position | Cla97Chr04:15443616 | |||||
| Allele (Ref/Alt) | G/C | |||||
| Annotation | missense variant (Cla97C04G070940) | |||||
| Flanking sequence (500 bp up- and downstream, with all variants shown) | >Cla97Chr04_15443616 (Cla97Chr04:15443116-15444116)
TC[A|G]CATCTGAATAACAATATG[A|G]TTTTGAAGGAGAGAAATAGCAAAATTCCTACATTTCTCTATGCAATGCCCTTTTCATCAAATCGGATATTTCTGGAGGAA ACTTCTTTGGTAGC[T|A]CGACCTGG[G|T]TTACAAATGAGCGATATCCAGGAAAGAATGGA[G|C]GTAAGATTGAAGCACTTGGGAATAAAAGTGAAGAGCATTGA AGAGGATGAGCATTGTGTCATTCCAATGGGTGGACCGCTGCCAGTTCTTCCTCAAAGAGTTGTTGGAATTGGTGGAACAGCAGGGATGGTGCACCCTTCAACTGGATATA TGGTAGCAAGAACTCTAGCAGC[G|A]GCACCTATTGTTGCTAGTGCAATAGTCCGGTGCCTTGGTTCAGATGGAC[G|A]TTTCAGGGGTGATGCGATATCCTCTGAAG TTTGGAAAGATCTATGGCCCATCGAAAGGAGGAGGCAGAGAGAATTTTTCTGTTTTGGGATGGATATTTTATTGAAGCTGGATCTAAA[G|C]GGTACAAGAAGGTTTTT TGATGCATTTTTTGATCTTGAACCTCGTTATTGGCATGGATTCTTGTCATCACGACTATTCCTTCCTGAGCTGTTACTCTTTGGGCTTTCCTTATTCTCTCACGCATCTA ATGCCTCCAGGCTTGAAATCATGGCAAAGGGAACTCCATCTTTGGTAAACATGATCGGCAATCTGGTAAAGGATAGAGATTAAGATGAATATAGAGTTACTGTGTTGTAA GCTAATCACCATACTGATGCACTTG[C|A]ATCATCACATTTACTTCTGCAGATGATTGTTCATAAGATTATGAGTTAGC[C|T]ATAGCTTG[T|A]AGCCATTTATCT CTTTAGCATGTTATTCCTAGTTGATACCTCATATAATTTCTCATAAAAAAGAAGTGCTTC[A|C]AAAGTTATCTGTCAGCACATATGCACATATA[T|C]GAGCTTGAG ATCAGATTGTTTTATGCACAGTA[A|G]TCATTGTAAATACCATAAAAGACTAA[A|G]AGACTAGGATAT Flanking sequence | (500 bp up- and downstream, with variants in flanking region not shown) > (Cla97Chr04:15443116-15444116)
| TCACATCTGAATAACAATATGATTTTGAAGGAGAGAAATAGCAAAATTCCTACATTTCTCTATGCAATGCCCTTTTCATCAAATCGGATATTTCTGGAGGAAACTTCTTT GGTAGCTCGACCTGGGTTACAAATGAGCGATATCCAGGAAAGAATGGAGGTAAGATTGAAGCACTTGGGAATAAAAGTGAAGAGCATTGAAGAGGATGAGCATTGTGTCA TTCCAATGGGTGGACCGCTGCCAGTTCTTCCTCAAAGAGTTGTTGGAATTGGTGGAACAGCAGGGATGGTGCACCCTTCAACTGGATATATGGTAGCAAGAACTCTAGCA GCGGCACCTATTGTTGCTAGTGCAATAGTCCGGTGCCTTGGTTCAGATGGACGTTTCAGGGGTGATGCGATATCCTCTGAAGTTTGGAAAGATCTATGGCCCATCGAAAG GAGGAGGCAGAGAGAATTTTTCTGTTTTGGGATGGATATTTTATTGAAGCTGGATCTAAA[G|C]GGTACAAGAAGGTTTTTTGATGCATTTTTTGATCTTGAACCTCGT TATTGGCATGGATTCTTGTCATCACGACTATTCCTTCCTGAGCTGTTACTCTTTGGGCTTTCCTTATTCTCTCACGCATCTAATGCCTCCAGGCTTGAAATCATGGCAAA GGGAACTCCATCTTTGGTAAACATGATCGGCAATCTGGTAAAGGATAGAGATTAAGATGAATATAGAGTTACTGTGTTGTAAGCTAATCACCATACTGATGCACTTGCAT CATCACATTTACTTCTGCAGATGATTGTTCATAAGATTATGAGTTAGCCATAGCTTGTAGCCATTTATCTCTTTAGCATGTTATTCCTAGTTGATACCTCATATAATTTC TCATAAAAAAGAAGTGCTTCAAAAGTTATCTGTCAGCACATATGCACATATATGAGCTTGAGATCAGATTGTTTTATGCACAGTAATCATTGTAAATACCATAAAAGACT AAAAGACTAGGATAT Allele frequency in different groups (in all samples) | Click the bars to get the allele information in individual accessions
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