Variant detail of Cla97Chr04:15443498 [Watermelon resequencing (SNP v3)]
| variant ID | Cla97Chr04_15443498 | |||||
| Genome position | Cla97Chr04:15443498 | |||||
| Allele (Ref/Alt) | G/A | |||||
| Annotation | missense variant (Cla97C04G070940) | |||||
| Flanking sequence (500 bp up- and downstream, with all variants shown) | >Cla97Chr04_15443498 (Cla97Chr04:15442998-15443998)
CCTTGTCCAATATGATAAGCCTTACAATCCAGGCTACCAGGTAGCTTATGGGATTTTAGCTGAGGTGGAGGAACATCCATTTGATGTTAACAAGATGGTGTTTATGGACT GGAGAGATTC[A|G]CATCTGAATAACAATATG[A|G]TTTTGAAGGAGAGAAATAGCAAAATTCCTACATTTCTCTATGCAATGCCCTTTTCATCAAATCGGATATTTC TGGAGGAAACTTCTTTGGTAGC[T|A]CGACCTGG[G|T]TTACAAATGAGCGATATCCAGGAAAGAATGGA[G|C]GTAAGATTGAAGCACTTGGGAATAAAAGTGAAG AGCATTGAAGAGGATGAGCATTGTGTCATTCCAATGGGTGGACCGCTGCCAGTTCTTCCTCAAAGAGTTGTTGGAATTGGTGGAACAGCAGGGATGGTGCACCCTTCAAC TGGATATATGGTAGCAAGAACTCTAGCAGC[G|A]GCACCTATTGTTGCTAGTGCAATAGTCCGGTGCCTTGGTTCAGATGGAC[G|A]TTTCAGGGGTGATGCGATATC CTCTGAAGTTTGGAAAGATCTATGGCCCATCGAAAGGAGGAGGCAGAGAGAATTTTTCTGTTTTGGGATGGATATTTTATTGAAGCTGGATCTAAA[G|C]GGTACAAGA AGGTTTTTTGATGCATTTTTTGATCTTGAACCTCGTTATTGGCATGGATTCTTGTCATCACGACTATTCCTTCCTGAGCTGTTACTCTTTGGGCTTTCCTTATTCTCTCA CGCATCTAATGCCTCCAGGCTTGAAATCATGGCAAAGGGAACTCCATCTTTGGTAAACATGATCGGCAATCTGGTAAAGGATAGAGATTAAGATGAATATAGAGTTACTG TGTTGTAAGCTAATCACCATACTGATGCACTTG[C|A]ATCATCACATTTACTTCTGCAGATGATTGTTCATAAGATTATGAGTTAGC[C|T]ATAGCTTG[T|A]AGCC ATTTATCTCTTTAGCATGTTATTCCTAGTTGATACCTCATATAATTTCTCATAAA Flanking sequence | (500 bp up- and downstream, with variants in flanking region not shown) > (Cla97Chr04:15442998-15443998)
| CCTTGTCCAATATGATAAGCCTTACAATCCAGGCTACCAGGTAGCTTATGGGATTTTAGCTGAGGTGGAGGAACATCCATTTGATGTTAACAAGATGGTGTTTATGGACT GGAGAGATTCACATCTGAATAACAATATGATTTTGAAGGAGAGAAATAGCAAAATTCCTACATTTCTCTATGCAATGCCCTTTTCATCAAATCGGATATTTCTGGAGGAA ACTTCTTTGGTAGCTCGACCTGGGTTACAAATGAGCGATATCCAGGAAAGAATGGAGGTAAGATTGAAGCACTTGGGAATAAAAGTGAAGAGCATTGAAGAGGATGAGCA TTGTGTCATTCCAATGGGTGGACCGCTGCCAGTTCTTCCTCAAAGAGTTGTTGGAATTGGTGGAACAGCAGGGATGGTGCACCCTTCAACTGGATATATGGTAGCAAGAA CTCTAGCAGCGGCACCTATTGTTGCTAGTGCAATAGTCCGGTGCCTTGGTTCAGATGGAC[G|A]TTTCAGGGGTGATGCGATATCCTCTGAAGTTTGGAAAGATCTATG GCCCATCGAAAGGAGGAGGCAGAGAGAATTTTTCTGTTTTGGGATGGATATTTTATTGAAGCTGGATCTAAAGGGTACAAGAAGGTTTTTTGATGCATTTTTTGATCTTG AACCTCGTTATTGGCATGGATTCTTGTCATCACGACTATTCCTTCCTGAGCTGTTACTCTTTGGGCTTTCCTTATTCTCTCACGCATCTAATGCCTCCAGGCTTGAAATC ATGGCAAAGGGAACTCCATCTTTGGTAAACATGATCGGCAATCTGGTAAAGGATAGAGATTAAGATGAATATAGAGTTACTGTGTTGTAAGCTAATCACCATACTGATGC ACTTGCATCATCACATTTACTTCTGCAGATGATTGTTCATAAGATTATGAGTTAGCCATAGCTTGTAGCCATTTATCTCTTTAGCATGTTATTCCTAGTTGATACCTCAT ATAATTTCTCATAAA Allele frequency in different groups (in all samples) | Click the bars to get the allele information in individual accessions
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