Variant detail of Cla97Chr04:15443448 [Watermelon resequencing (SNP v3)]

variant IDCla97Chr04_15443448
Genome positionCla97Chr04:15443448
Allele (Ref/Alt)G/A
Annotationsynonymous variant (Cla97C04G070940)
Flanking sequence
(500 bp up- and downstream, with all variants shown)		>Cla97Chr04_15443448 (Cla97Chr04:15442948-15443948)
GTGACCATTCAAGCTGCC[A|G]TTGTTCTTGATGC[C|T]ACTGGC[G|T]TCTCTCGATGCCTTGTCCAATATGATAAGCCTTACAATCCAGGCTACCAGGTAGCTTA
TGGGATTTTAGCTGAGGTGGAGGAACATCCATTTGATGTTAACAAGATGGTGTTTATGGACTGGAGAGATTC[A|G]CATCTGAATAACAATATG[A|G]TTTTGAAGGA
GAGAAATAGCAAAATTCCTACATTTCTCTATGCAATGCCCTTTTCATCAAATCGGATATTTCTGGAGGAAACTTCTTTGGTAGC[T|A]CGACCTGG[G|T]TTACAAAT
GAGCGATATCCAGGAAAGAATGGA[G|C]GTAAGATTGAAGCACTTGGGAATAAAAGTGAAGAGCATTGAAGAGGATGAGCATTGTGTCATTCCAATGGGTGGACCGCTG
CCAGTTCTTCCTCAAAGAGTTGTTGGAATTGGTGGAACAGCAGGGATGGTGCACCCTTCAACTGGATATATGGTAGCAAGAACTCTAGCAGC[G|A]GCACCTATTGTTG
CTAGTGCAATAGTCCGGTGCCTTGGTTCAGATGGAC[G|A]TTTCAGGGGTGATGCGATATCCTCTGAAGTTTGGAAAGATCTATGGCCCATCGAAAGGAGGAGGCAGAG
AGAATTTTTCTGTTTTGGGATGGATATTTTATTGAAGCTGGATCTAAA[G|C]GGTACAAGAAGGTTTTTTGATGCATTTTTTGATCTTGAACCTCGTTATTGGCATGGA
TTCTTGTCATCACGACTATTCCTTCCTGAGCTGTTACTCTTTGGGCTTTCCTTATTCTCTCACGCATCTAATGCCTCCAGGCTTGAAATCATGGCAAAGGGAACTCCATC
TTTGGTAAACATGATCGGCAATCTGGTAAAGGATAGAGATTAAGATGAATATAGAGTTACTGTGTTGTAAGCTAATCACCATACTGATGCACTTG[C|A]ATCATCACAT
TTACTTCTGCAGATGATTGTTCATAAGATTATGAGTTAGC[C|T]ATAGCTTG[T|A]AGCCATTTA
Flanking sequence
(500 bp up- and downstream, with variants in flanking region not shown)		> (Cla97Chr04:15442948-15443948)
GTGACCATTCAAGCTGCCATTGTTCTTGATGCCACTGGCGTCTCTCGATGCCTTGTCCAATATGATAAGCCTTACAATCCAGGCTACCAGGTAGCTTATGGGATTTTAGC
TGAGGTGGAGGAACATCCATTTGATGTTAACAAGATGGTGTTTATGGACTGGAGAGATTCACATCTGAATAACAATATGATTTTGAAGGAGAGAAATAGCAAAATTCCTA
CATTTCTCTATGCAATGCCCTTTTCATCAAATCGGATATTTCTGGAGGAAACTTCTTTGGTAGCTCGACCTGGGTTACAAATGAGCGATATCCAGGAAAGAATGGAGGTA
AGATTGAAGCACTTGGGAATAAAAGTGAAGAGCATTGAAGAGGATGAGCATTGTGTCATTCCAATGGGTGGACCGCTGCCAGTTCTTCCTCAAAGAGTTGTTGGAATTGG
TGGAACAGCAGGGATGGTGCACCCTTCAACTGGATATATGGTAGCAAGAACTCTAGCAGC[G|A]GCACCTATTGTTGCTAGTGCAATAGTCCGGTGCCTTGGTTCAGAT
GGACGTTTCAGGGGTGATGCGATATCCTCTGAAGTTTGGAAAGATCTATGGCCCATCGAAAGGAGGAGGCAGAGAGAATTTTTCTGTTTTGGGATGGATATTTTATTGAA
GCTGGATCTAAAGGGTACAAGAAGGTTTTTTGATGCATTTTTTGATCTTGAACCTCGTTATTGGCATGGATTCTTGTCATCACGACTATTCCTTCCTGAGCTGTTACTCT
TTGGGCTTTCCTTATTCTCTCACGCATCTAATGCCTCCAGGCTTGAAATCATGGCAAAGGGAACTCCATCTTTGGTAAACATGATCGGCAATCTGGTAAAGGATAGAGAT
TAAGATGAATATAGAGTTACTGTGTTGTAAGCTAATCACCATACTGATGCACTTGCATCATCACATTTACTTCTGCAGATGATTGTTCATAAGATTATGAGTTAGCCATA
GCTTGTAGCCATTTA
Allele frequency in different groups (in all samples)

Click the bars to get the allele information in individual accessions
Reference allele Reference allele Reference allele Reference allele Reference allele Reference allele Reference allele Alternative allele Alternative allele Alternative allele Alternative allele Alternative allele Alternative allele Alternative allele