Variant detail of Cla97Chr04:15443274 [Watermelon resequencing (SNP v3)]

variant IDCla97Chr04_15443274
Genome positionCla97Chr04:15443274
Allele (Ref/Alt)G/C
Annotationmissense variant (Cla97C04G070940)
Flanking sequence
(500 bp up- and downstream, with all variants shown)		>Cla97Chr04_15443274 (Cla97Chr04:15442774-15443774)
ACCAATGAGCAATCAAC[A|G]AAAGATCTTGCTCGACCTTATGCGAGGGTTAATAGAAAGCAACTCAAGTCAAAAATGTTGCAGAAATGCATTTCCAATGGTGTTAAGT
TTCATGAAGCTAAAGTTATTAAAGTTATACATGAGGAGTTCAAATCCTTGTTAATTTGCAATGATGGTGTGACCATTCAAGCTGCC[A|G]TTGTTCTTGATGC[C|T]A
CTGGC[G|T]TCTCTCGATGCCTTGTCCAATATGATAAGCCTTACAATCCAGGCTACCAGGTAGCTTATGGGATTTTAGCTGAGGTGGAGGAACATCCATTTGATGTTAA
CAAGATGGTGTTTATGGACTGGAGAGATTC[A|G]CATCTGAATAACAATATG[A|G]TTTTGAAGGAGAGAAATAGCAAAATTCCTACATTTCTCTATGCAATGCCCTT
TTCATCAAATCGGATATTTCTGGAGGAAACTTCTTTGGTAGC[T|A]CGACCTGG[G|T]TTACAAATGAGCGATATCCAGGAAAGAATGGA[G|C]GTAAGATTGAAGC
ACTTGGGAATAAAAGTGAAGAGCATTGAAGAGGATGAGCATTGTGTCATTCCAATGGGTGGACCGCTGCCAGTTCTTCCTCAAAGAGTTGTTGGAATTGGTGGAACAGCA
GGGATGGTGCACCCTTCAACTGGATATATGGTAGCAAGAACTCTAGCAGC[G|A]GCACCTATTGTTGCTAGTGCAATAGTCCGGTGCCTTGGTTCAGATGGAC[G|A]T
TTCAGGGGTGATGCGATATCCTCTGAAGTTTGGAAAGATCTATGGCCCATCGAAAGGAGGAGGCAGAGAGAATTTTTCTGTTTTGGGATGGATATTTTATTGAAGCTGGA
TCTAAA[G|C]GGTACAAGAAGGTTTTTTGATGCATTTTTTGATCTTGAACCTCGTTATTGGCATGGATTCTTGTCATCACGACTATTCCTTCCTGAGCTGTTACTCTTT
GGGCTTTCCTTATTCTCTCACGCATCTAATGCCTCCAGGCTTGAAATCATGGCAAAGGG
Flanking sequence
(500 bp up- and downstream, with variants in flanking region not shown)		> (Cla97Chr04:15442774-15443774)
ACCAATGAGCAATCAACAAAAGATCTTGCTCGACCTTATGCGAGGGTTAATAGAAAGCAACTCAAGTCAAAAATGTTGCAGAAATGCATTTCCAATGGTGTTAAGTTTCA
TGAAGCTAAAGTTATTAAAGTTATACATGAGGAGTTCAAATCCTTGTTAATTTGCAATGATGGTGTGACCATTCAAGCTGCCATTGTTCTTGATGCCACTGGCGTCTCTC
GATGCCTTGTCCAATATGATAAGCCTTACAATCCAGGCTACCAGGTAGCTTATGGGATTTTAGCTGAGGTGGAGGAACATCCATTTGATGTTAACAAGATGGTGTTTATG
GACTGGAGAGATTCACATCTGAATAACAATATGATTTTGAAGGAGAGAAATAGCAAAATTCCTACATTTCTCTATGCAATGCCCTTTTCATCAAATCGGATATTTCTGGA
GGAAACTTCTTTGGTAGCTCGACCTGGGTTACAAATGAGCGATATCCAGGAAAGAATGGA[G|C]GTAAGATTGAAGCACTTGGGAATAAAAGTGAAGAGCATTGAAGAG
GATGAGCATTGTGTCATTCCAATGGGTGGACCGCTGCCAGTTCTTCCTCAAAGAGTTGTTGGAATTGGTGGAACAGCAGGGATGGTGCACCCTTCAACTGGATATATGGT
AGCAAGAACTCTAGCAGCGGCACCTATTGTTGCTAGTGCAATAGTCCGGTGCCTTGGTTCAGATGGACGTTTCAGGGGTGATGCGATATCCTCTGAAGTTTGGAAAGATC
TATGGCCCATCGAAAGGAGGAGGCAGAGAGAATTTTTCTGTTTTGGGATGGATATTTTATTGAAGCTGGATCTAAAGGGTACAAGAAGGTTTTTTGATGCATTTTTTGAT
CTTGAACCTCGTTATTGGCATGGATTCTTGTCATCACGACTATTCCTTCCTGAGCTGTTACTCTTTGGGCTTTCCTTATTCTCTCACGCATCTAATGCCTCCAGGCTTGA
AATCATGGCAAAGGG
Allele frequency in different groups (in all samples)

Click the bars to get the allele information in individual accessions
Reference allele Reference allele Reference allele Reference allele Reference allele Reference allele Reference allele Alternative allele Alternative allele Alternative allele Alternative allele Alternative allele Alternative allele Alternative allele