Variant detail of Cla97Chr04:15443241 [Watermelon resequencing (SNP v3)]

variant IDCla97Chr04_15443241
Genome positionCla97Chr04:15443241
Allele (Ref/Alt)G/T
Annotationsynonymous variant (Cla97C04G070940)
Flanking sequence
(500 bp up- and downstream, with all variants shown)		>Cla97Chr04_15443241 (Cla97Chr04:15442741-15443741)
CTCGACACGACTTGGTCTGG[T|C]GCTGTCGT[G|T]TTCACCAATGAGCAATCAAC[A|G]AAAGATCTTGCTCGACCTTATGCGAGGGTTAATAGAAAGCAACTCAA
GTCAAAAATGTTGCAGAAATGCATTTCCAATGGTGTTAAGTTTCATGAAGCTAAAGTTATTAAAGTTATACATGAGGAGTTCAAATCCTTGTTAATTTGCAATGATGGTG
TGACCATTCAAGCTGCC[A|G]TTGTTCTTGATGC[C|T]ACTGGC[G|T]TCTCTCGATGCCTTGTCCAATATGATAAGCCTTACAATCCAGGCTACCAGGTAGCTTAT
GGGATTTTAGCTGAGGTGGAGGAACATCCATTTGATGTTAACAAGATGGTGTTTATGGACTGGAGAGATTC[A|G]CATCTGAATAACAATATG[A|G]TTTTGAAGGAG
AGAAATAGCAAAATTCCTACATTTCTCTATGCAATGCCCTTTTCATCAAATCGGATATTTCTGGAGGAAACTTCTTTGGTAGC[T|A]CGACCTGG[G|T]TTACAAATG
AGCGATATCCAGGAAAGAATGGA[G|C]GTAAGATTGAAGCACTTGGGAATAAAAGTGAAGAGCATTGAAGAGGATGAGCATTGTGTCATTCCAATGGGTGGACCGCTGC
CAGTTCTTCCTCAAAGAGTTGTTGGAATTGGTGGAACAGCAGGGATGGTGCACCCTTCAACTGGATATATGGTAGCAAGAACTCTAGCAGC[G|A]GCACCTATTGTTGC
TAGTGCAATAGTCCGGTGCCTTGGTTCAGATGGAC[G|A]TTTCAGGGGTGATGCGATATCCTCTGAAGTTTGGAAAGATCTATGGCCCATCGAAAGGAGGAGGCAGAGA
GAATTTTTCTGTTTTGGGATGGATATTTTATTGAAGCTGGATCTAAA[G|C]GGTACAAGAAGGTTTTTTGATGCATTTTTTGATCTTGAACCTCGTTATTGGCATGGAT
TCTTGTCATCACGACTATTCCTTCCTGAGCTGTTACTCTTTGGGCTTTCCTTATTCTCTCACGCATC
Flanking sequence
(500 bp up- and downstream, with variants in flanking region not shown)		> (Cla97Chr04:15442741-15443741)
CTCGACACGACTTGGTCTGGTGCTGTCGTGTTCACCAATGAGCAATCAACAAAAGATCTTGCTCGACCTTATGCGAGGGTTAATAGAAAGCAACTCAAGTCAAAAATGTT
GCAGAAATGCATTTCCAATGGTGTTAAGTTTCATGAAGCTAAAGTTATTAAAGTTATACATGAGGAGTTCAAATCCTTGTTAATTTGCAATGATGGTGTGACCATTCAAG
CTGCCATTGTTCTTGATGCCACTGGCGTCTCTCGATGCCTTGTCCAATATGATAAGCCTTACAATCCAGGCTACCAGGTAGCTTATGGGATTTTAGCTGAGGTGGAGGAA
CATCCATTTGATGTTAACAAGATGGTGTTTATGGACTGGAGAGATTCACATCTGAATAACAATATGATTTTGAAGGAGAGAAATAGCAAAATTCCTACATTTCTCTATGC
AATGCCCTTTTCATCAAATCGGATATTTCTGGAGGAAACTTCTTTGGTAGCTCGACCTGG[G|T]TTACAAATGAGCGATATCCAGGAAAGAATGGAGGTAAGATTGAAG
CACTTGGGAATAAAAGTGAAGAGCATTGAAGAGGATGAGCATTGTGTCATTCCAATGGGTGGACCGCTGCCAGTTCTTCCTCAAAGAGTTGTTGGAATTGGTGGAACAGC
AGGGATGGTGCACCCTTCAACTGGATATATGGTAGCAAGAACTCTAGCAGCGGCACCTATTGTTGCTAGTGCAATAGTCCGGTGCCTTGGTTCAGATGGACGTTTCAGGG
GTGATGCGATATCCTCTGAAGTTTGGAAAGATCTATGGCCCATCGAAAGGAGGAGGCAGAGAGAATTTTTCTGTTTTGGGATGGATATTTTATTGAAGCTGGATCTAAAG
GGTACAAGAAGGTTTTTTGATGCATTTTTTGATCTTGAACCTCGTTATTGGCATGGATTCTTGTCATCACGACTATTCCTTCCTGAGCTGTTACTCTTTGGGCTTTCCTT
ATTCTCTCACGCATC
Allele frequency in different groups (in all samples)

Click the bars to get the allele information in individual accessions
Reference allele Reference allele Reference allele Reference allele Reference allele Reference allele Reference allele Alternative allele Alternative allele Alternative allele Alternative allele Alternative allele Alternative allele Alternative allele