Variant detail of Cla97Chr04:15443232 [Watermelon resequencing (SNP v3)]

variant IDCla97Chr04_15443232
Genome positionCla97Chr04:15443232
Allele (Ref/Alt)T/A
Annotationsynonymous variant (Cla97C04G070940)
Flanking sequence
(500 bp up- and downstream, with all variants shown)		>Cla97Chr04_15443232 (Cla97Chr04:15442732-15443732)
CTAGATTGTCTCGACACGACTTGGTCTGG[T|C]GCTGTCGT[G|T]TTCACCAATGAGCAATCAAC[A|G]AAAGATCTTGCTCGACCTTATGCGAGGGTTAATAGAAA
GCAACTCAAGTCAAAAATGTTGCAGAAATGCATTTCCAATGGTGTTAAGTTTCATGAAGCTAAAGTTATTAAAGTTATACATGAGGAGTTCAAATCCTTGTTAATTTGCA
ATGATGGTGTGACCATTCAAGCTGCC[A|G]TTGTTCTTGATGC[C|T]ACTGGC[G|T]TCTCTCGATGCCTTGTCCAATATGATAAGCCTTACAATCCAGGCTACCAG
GTAGCTTATGGGATTTTAGCTGAGGTGGAGGAACATCCATTTGATGTTAACAAGATGGTGTTTATGGACTGGAGAGATTC[A|G]CATCTGAATAACAATATG[A|G]TT
TTGAAGGAGAGAAATAGCAAAATTCCTACATTTCTCTATGCAATGCCCTTTTCATCAAATCGGATATTTCTGGAGGAAACTTCTTTGGTAGC[T|A]CGACCTGG[G|T]
TTACAAATGAGCGATATCCAGGAAAGAATGGA[G|C]GTAAGATTGAAGCACTTGGGAATAAAAGTGAAGAGCATTGAAGAGGATGAGCATTGTGTCATTCCAATGGGTG
GACCGCTGCCAGTTCTTCCTCAAAGAGTTGTTGGAATTGGTGGAACAGCAGGGATGGTGCACCCTTCAACTGGATATATGGTAGCAAGAACTCTAGCAGC[G|A]GCACC
TATTGTTGCTAGTGCAATAGTCCGGTGCCTTGGTTCAGATGGAC[G|A]TTTCAGGGGTGATGCGATATCCTCTGAAGTTTGGAAAGATCTATGGCCCATCGAAAGGAGG
AGGCAGAGAGAATTTTTCTGTTTTGGGATGGATATTTTATTGAAGCTGGATCTAAA[G|C]GGTACAAGAAGGTTTTTTGATGCATTTTTTGATCTTGAACCTCGTTATT
GGCATGGATTCTTGTCATCACGACTATTCCTTCCTGAGCTGTTACTCTTTGGGCTTTCCTTATTCTC
Flanking sequence
(500 bp up- and downstream, with variants in flanking region not shown)		> (Cla97Chr04:15442732-15443732)
CTAGATTGTCTCGACACGACTTGGTCTGGTGCTGTCGTGTTCACCAATGAGCAATCAACAAAAGATCTTGCTCGACCTTATGCGAGGGTTAATAGAAAGCAACTCAAGTC
AAAAATGTTGCAGAAATGCATTTCCAATGGTGTTAAGTTTCATGAAGCTAAAGTTATTAAAGTTATACATGAGGAGTTCAAATCCTTGTTAATTTGCAATGATGGTGTGA
CCATTCAAGCTGCCATTGTTCTTGATGCCACTGGCGTCTCTCGATGCCTTGTCCAATATGATAAGCCTTACAATCCAGGCTACCAGGTAGCTTATGGGATTTTAGCTGAG
GTGGAGGAACATCCATTTGATGTTAACAAGATGGTGTTTATGGACTGGAGAGATTCACATCTGAATAACAATATGATTTTGAAGGAGAGAAATAGCAAAATTCCTACATT
TCTCTATGCAATGCCCTTTTCATCAAATCGGATATTTCTGGAGGAAACTTCTTTGGTAGC[T|A]CGACCTGGGTTACAAATGAGCGATATCCAGGAAAGAATGGAGGTA
AGATTGAAGCACTTGGGAATAAAAGTGAAGAGCATTGAAGAGGATGAGCATTGTGTCATTCCAATGGGTGGACCGCTGCCAGTTCTTCCTCAAAGAGTTGTTGGAATTGG
TGGAACAGCAGGGATGGTGCACCCTTCAACTGGATATATGGTAGCAAGAACTCTAGCAGCGGCACCTATTGTTGCTAGTGCAATAGTCCGGTGCCTTGGTTCAGATGGAC
GTTTCAGGGGTGATGCGATATCCTCTGAAGTTTGGAAAGATCTATGGCCCATCGAAAGGAGGAGGCAGAGAGAATTTTTCTGTTTTGGGATGGATATTTTATTGAAGCTG
GATCTAAAGGGTACAAGAAGGTTTTTTGATGCATTTTTTGATCTTGAACCTCGTTATTGGCATGGATTCTTGTCATCACGACTATTCCTTCCTGAGCTGTTACTCTTTGG
GCTTTCCTTATTCTC
Allele frequency in different groups (in all samples)

Click the bars to get the allele information in individual accessions
Reference allele Reference allele Reference allele Reference allele Reference allele Reference allele Reference allele Alternative allele Alternative allele Alternative allele Alternative allele Alternative allele Alternative allele Alternative allele