Variant detail of Cla97Chr04:15443137 [Watermelon resequencing (SNP v3)]
| variant ID | Cla97Chr04_15443137 | |||||
| Genome position | Cla97Chr04:15443137 | |||||
| Allele (Ref/Alt) | A/G | |||||
| Annotation | missense variant (Cla97C04G070940) | |||||
| Flanking sequence (500 bp up- and downstream, with all variants shown) | >Cla97Chr04_15443137 (Cla97Chr04:15442637-15443637)
CAGGGCTTTCAGTTTGTGCAATTGACCCATCTCCCA[A|G]GTTGATTTGGCCCAACAATTATGGGGTTTGGGTGGATGAATTTGAGGCAATGGATTTGCTAGATTGTCT CGACACGACTTGGTCTGG[T|C]GCTGTCGT[G|T]TTCACCAATGAGCAATCAAC[A|G]AAAGATCTTGCTCGACCTTATGCGAGGGTTAATAGAAAGCAACTCAAGT CAAAAATGTTGCAGAAATGCATTTCCAATGGTGTTAAGTTTCATGAAGCTAAAGTTATTAAAGTTATACATGAGGAGTTCAAATCCTTGTTAATTTGCAATGATGGTGTG ACCATTCAAGCTGCC[A|G]TTGTTCTTGATGC[C|T]ACTGGC[G|T]TCTCTCGATGCCTTGTCCAATATGATAAGCCTTACAATCCAGGCTACCAGGTAGCTTATGG GATTTTAGCTGAGGTGGAGGAACATCCATTTGATGTTAACAAGATGGTGTTTATGGACTGGAGAGATTC[A|G]CATCTGAATAACAATATG[A|G]TTTTGAAGGAGAG AAATAGCAAAATTCCTACATTTCTCTATGCAATGCCCTTTTCATCAAATCGGATATTTCTGGAGGAAACTTCTTTGGTAGC[T|A]CGACCTGG[G|T]TTACAAATGAG CGATATCCAGGAAAGAATGGA[G|C]GTAAGATTGAAGCACTTGGGAATAAAAGTGAAGAGCATTGAAGAGGATGAGCATTGTGTCATTCCAATGGGTGGACCGCTGCCA GTTCTTCCTCAAAGAGTTGTTGGAATTGGTGGAACAGCAGGGATGGTGCACCCTTCAACTGGATATATGGTAGCAAGAACTCTAGCAGC[G|A]GCACCTATTGTTGCTA GTGCAATAGTCCGGTGCCTTGGTTCAGATGGAC[G|A]TTTCAGGGGTGATGCGATATCCTCTGAAGTTTGGAAAGATCTATGGCCCATCGAAAGGAGGAGGCAGAGAGA ATTTTTCTGTTTTGGGATGGATATTTTATTGAAGCTGGATCTAAA[G|C]GGTACAAGAAGGTTTTTTGAT Flanking sequence | (500 bp up- and downstream, with variants in flanking region not shown) > (Cla97Chr04:15442637-15443637)
| CAGGGCTTTCAGTTTGTGCAATTGACCCATCTCCCAAGTTGATTTGGCCCAACAATTATGGGGTTTGGGTGGATGAATTTGAGGCAATGGATTTGCTAGATTGTCTCGAC ACGACTTGGTCTGGTGCTGTCGTGTTCACCAATGAGCAATCAACAAAAGATCTTGCTCGACCTTATGCGAGGGTTAATAGAAAGCAACTCAAGTCAAAAATGTTGCAGAA ATGCATTTCCAATGGTGTTAAGTTTCATGAAGCTAAAGTTATTAAAGTTATACATGAGGAGTTCAAATCCTTGTTAATTTGCAATGATGGTGTGACCATTCAAGCTGCCA TTGTTCTTGATGCCACTGGCGTCTCTCGATGCCTTGTCCAATATGATAAGCCTTACAATCCAGGCTACCAGGTAGCTTATGGGATTTTAGCTGAGGTGGAGGAACATCCA TTTGATGTTAACAAGATGGTGTTTATGGACTGGAGAGATTCACATCTGAATAACAATATG[A|G]TTTTGAAGGAGAGAAATAGCAAAATTCCTACATTTCTCTATGCAA TGCCCTTTTCATCAAATCGGATATTTCTGGAGGAAACTTCTTTGGTAGCTCGACCTGGGTTACAAATGAGCGATATCCAGGAAAGAATGGAGGTAAGATTGAAGCACTTG GGAATAAAAGTGAAGAGCATTGAAGAGGATGAGCATTGTGTCATTCCAATGGGTGGACCGCTGCCAGTTCTTCCTCAAAGAGTTGTTGGAATTGGTGGAACAGCAGGGAT GGTGCACCCTTCAACTGGATATATGGTAGCAAGAACTCTAGCAGCGGCACCTATTGTTGCTAGTGCAATAGTCCGGTGCCTTGGTTCAGATGGACGTTTCAGGGGTGATG CGATATCCTCTGAAGTTTGGAAAGATCTATGGCCCATCGAAAGGAGGAGGCAGAGAGAATTTTTCTGTTTTGGGATGGATATTTTATTGAAGCTGGATCTAAAGGGTACA AGAAGGTTTTTTGAT Allele frequency in different groups (in all samples) | Click the bars to get the allele information in individual accessions
|
