Variant detail of Cla97Chr04:15443118 [Watermelon resequencing (SNP v3)]
| variant ID | Cla97Chr04_15443118 | |||||
| Genome position | Cla97Chr04:15443118 | |||||
| Allele (Ref/Alt) | A/G | |||||
| Annotation | synonymous variant (Cla97C04G070940) | |||||
| Flanking sequence (500 bp up- and downstream, with all variants shown) | >Cla97Chr04_15443118 (Cla97Chr04:15442618-15443618)
GCGCAACAGGTTTCAGAGGCAGGGCTTTCAGTTTGTGCAATTGACCCATCTCCCA[A|G]GTTGATTTGGCCCAACAATTATGGGGTTTGGGTGGATGAATTTGAGGCAA TGGATTTGCTAGATTGTCTCGACACGACTTGGTCTGG[T|C]GCTGTCGT[G|T]TTCACCAATGAGCAATCAAC[A|G]AAAGATCTTGCTCGACCTTATGCGAGGGTT AATAGAAAGCAACTCAAGTCAAAAATGTTGCAGAAATGCATTTCCAATGGTGTTAAGTTTCATGAAGCTAAAGTTATTAAAGTTATACATGAGGAGTTCAAATCCTTGTT AATTTGCAATGATGGTGTGACCATTCAAGCTGCC[A|G]TTGTTCTTGATGC[C|T]ACTGGC[G|T]TCTCTCGATGCCTTGTCCAATATGATAAGCCTTACAATCCAG GCTACCAGGTAGCTTATGGGATTTTAGCTGAGGTGGAGGAACATCCATTTGATGTTAACAAGATGGTGTTTATGGACTGGAGAGATTC[A|G]CATCTGAATAACAATAT G[A|G]TTTTGAAGGAGAGAAATAGCAAAATTCCTACATTTCTCTATGCAATGCCCTTTTCATCAAATCGGATATTTCTGGAGGAAACTTCTTTGGTAGC[T|A]CGACC TGG[G|T]TTACAAATGAGCGATATCCAGGAAAGAATGGA[G|C]GTAAGATTGAAGCACTTGGGAATAAAAGTGAAGAGCATTGAAGAGGATGAGCATTGTGTCATTCC AATGGGTGGACCGCTGCCAGTTCTTCCTCAAAGAGTTGTTGGAATTGGTGGAACAGCAGGGATGGTGCACCCTTCAACTGGATATATGGTAGCAAGAACTCTAGCAGC[G |A]GCACCTATTGTTGCTAGTGCAATAGTCCGGTGCCTTGGTTCAGATGGAC[G|A]TTTCAGGGGTGATGCGATATCCTCTGAAGTTTGGAAAGATCTATGGCCCATCG AAAGGAGGAGGCAGAGAGAATTTTTCTGTTTTGGGATGGATATTTTATTGAAGCTGGATCTAAA[G|C]GG Flanking sequence | (500 bp up- and downstream, with variants in flanking region not shown) > (Cla97Chr04:15442618-15443618)
| GCGCAACAGGTTTCAGAGGCAGGGCTTTCAGTTTGTGCAATTGACCCATCTCCCAAGTTGATTTGGCCCAACAATTATGGGGTTTGGGTGGATGAATTTGAGGCAATGGA TTTGCTAGATTGTCTCGACACGACTTGGTCTGGTGCTGTCGTGTTCACCAATGAGCAATCAACAAAAGATCTTGCTCGACCTTATGCGAGGGTTAATAGAAAGCAACTCA AGTCAAAAATGTTGCAGAAATGCATTTCCAATGGTGTTAAGTTTCATGAAGCTAAAGTTATTAAAGTTATACATGAGGAGTTCAAATCCTTGTTAATTTGCAATGATGGT GTGACCATTCAAGCTGCCATTGTTCTTGATGCCACTGGCGTCTCTCGATGCCTTGTCCAATATGATAAGCCTTACAATCCAGGCTACCAGGTAGCTTATGGGATTTTAGC TGAGGTGGAGGAACATCCATTTGATGTTAACAAGATGGTGTTTATGGACTGGAGAGATTC[A|G]CATCTGAATAACAATATGATTTTGAAGGAGAGAAATAGCAAAATT CCTACATTTCTCTATGCAATGCCCTTTTCATCAAATCGGATATTTCTGGAGGAAACTTCTTTGGTAGCTCGACCTGGGTTACAAATGAGCGATATCCAGGAAAGAATGGA GGTAAGATTGAAGCACTTGGGAATAAAAGTGAAGAGCATTGAAGAGGATGAGCATTGTGTCATTCCAATGGGTGGACCGCTGCCAGTTCTTCCTCAAAGAGTTGTTGGAA TTGGTGGAACAGCAGGGATGGTGCACCCTTCAACTGGATATATGGTAGCAAGAACTCTAGCAGCGGCACCTATTGTTGCTAGTGCAATAGTCCGGTGCCTTGGTTCAGAT GGACGTTTCAGGGGTGATGCGATATCCTCTGAAGTTTGGAAAGATCTATGGCCCATCGAAAGGAGGAGGCAGAGAGAATTTTTCTGTTTTGGGATGGATATTTTATTGAA GCTGGATCTAAAGGG Allele frequency in different groups (in all samples) | Click the bars to get the allele information in individual accessions
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