Variant detail of Cla97Chr04:15442987 [Watermelon resequencing (SNP v3)]

variant IDCla97Chr04_15442987
Genome positionCla97Chr04:15442987
Allele (Ref/Alt)G/T
Annotationmissense variant (Cla97C04G070940)
Flanking sequence
(500 bp up- and downstream, with all variants shown)		>Cla97Chr04_15442987 (Cla97Chr04:15442487-15443487)
GT[T|G]CTCTTTTGGAGCTTGTTCCTGAAACCAAGAAGGAGAATCTTGAGGTTGAACTTCCCATGTATGATCCTTCGAAGGGCCTTGTTGTCGATCTTGC[G|A]GTCG
TGGGAGGCGGCCCAGCAGGGCTTGCTGTTGCGCAACAGGTTTCAGAGGCAGGGCTTTCAGTTTGTGCAATTGACCCATCTCCCA[A|G]GTTGATTTGGCCCAACAATTA
TGGGGTTTGGGTGGATGAATTTGAGGCAATGGATTTGCTAGATTGTCTCGACACGACTTGGTCTGG[T|C]GCTGTCGT[G|T]TTCACCAATGAGCAATCAAC[A|G]A
AAGATCTTGCTCGACCTTATGCGAGGGTTAATAGAAAGCAACTCAAGTCAAAAATGTTGCAGAAATGCATTTCCAATGGTGTTAAGTTTCATGAAGCTAAAGTTATTAAA
GTTATACATGAGGAGTTCAAATCCTTGTTAATTTGCAATGATGGTGTGACCATTCAAGCTGCC[A|G]TTGTTCTTGATGC[C|T]ACTGGC[G|T]TCTCTCGATGCCT
TGTCCAATATGATAAGCCTTACAATCCAGGCTACCAGGTAGCTTATGGGATTTTAGCTGAGGTGGAGGAACATCCATTTGATGTTAACAAGATGGTGTTTATGGACTGGA
GAGATTC[A|G]CATCTGAATAACAATATG[A|G]TTTTGAAGGAGAGAAATAGCAAAATTCCTACATTTCTCTATGCAATGCCCTTTTCATCAAATCGGATATTTCTGG
AGGAAACTTCTTTGGTAGC[T|A]CGACCTGG[G|T]TTACAAATGAGCGATATCCAGGAAAGAATGGA[G|C]GTAAGATTGAAGCACTTGGGAATAAAAGTGAAGAGC
ATTGAAGAGGATGAGCATTGTGTCATTCCAATGGGTGGACCGCTGCCAGTTCTTCCTCAAAGAGTTGTTGGAATTGGTGGAACAGCAGGGATGGTGCACCCTTCAACTGG
ATATATGGTAGCAAGAACTCTAGCAGC[G|A]GCACCTATTGTTGCTAGTGCAATAGTCCGGTGCCTTGGT
Flanking sequence
(500 bp up- and downstream, with variants in flanking region not shown)		> (Cla97Chr04:15442487-15443487)
GTTCTCTTTTGGAGCTTGTTCCTGAAACCAAGAAGGAGAATCTTGAGGTTGAACTTCCCATGTATGATCCTTCGAAGGGCCTTGTTGTCGATCTTGCGGTCGTGGGAGGC
GGCCCAGCAGGGCTTGCTGTTGCGCAACAGGTTTCAGAGGCAGGGCTTTCAGTTTGTGCAATTGACCCATCTCCCAAGTTGATTTGGCCCAACAATTATGGGGTTTGGGT
GGATGAATTTGAGGCAATGGATTTGCTAGATTGTCTCGACACGACTTGGTCTGGTGCTGTCGTGTTCACCAATGAGCAATCAACAAAAGATCTTGCTCGACCTTATGCGA
GGGTTAATAGAAAGCAACTCAAGTCAAAAATGTTGCAGAAATGCATTTCCAATGGTGTTAAGTTTCATGAAGCTAAAGTTATTAAAGTTATACATGAGGAGTTCAAATCC
TTGTTAATTTGCAATGATGGTGTGACCATTCAAGCTGCCATTGTTCTTGATGCCACTGGC[G|T]TCTCTCGATGCCTTGTCCAATATGATAAGCCTTACAATCCAGGCT
ACCAGGTAGCTTATGGGATTTTAGCTGAGGTGGAGGAACATCCATTTGATGTTAACAAGATGGTGTTTATGGACTGGAGAGATTCACATCTGAATAACAATATGATTTTG
AAGGAGAGAAATAGCAAAATTCCTACATTTCTCTATGCAATGCCCTTTTCATCAAATCGGATATTTCTGGAGGAAACTTCTTTGGTAGCTCGACCTGGGTTACAAATGAG
CGATATCCAGGAAAGAATGGAGGTAAGATTGAAGCACTTGGGAATAAAAGTGAAGAGCATTGAAGAGGATGAGCATTGTGTCATTCCAATGGGTGGACCGCTGCCAGTTC
TTCCTCAAAGAGTTGTTGGAATTGGTGGAACAGCAGGGATGGTGCACCCTTCAACTGGATATATGGTAGCAAGAACTCTAGCAGCGGCACCTATTGTTGCTAGTGCAATA
GTCCGGTGCCTTGGT
Allele frequency in different groups (in all samples)

Click the bars to get the allele information in individual accessions
Reference allele Reference allele Reference allele Reference allele Reference allele Reference allele Reference allele Alternative allele Alternative allele Alternative allele Alternative allele Alternative allele Alternative allele Alternative allele