Variant detail of Cla97Chr04:15442980 [Watermelon resequencing (SNP v3)]

variant IDCla97Chr04_15442980
Genome positionCla97Chr04:15442980
Allele (Ref/Alt)C/T
Annotationsynonymous variant (Cla97C04G070940)
Flanking sequence
(500 bp up- and downstream, with all variants shown)		>Cla97Chr04_15442980 (Cla97Chr04:15442480-15443480)
AGAAGTAGT[T|G]CTCTTTTGGAGCTTGTTCCTGAAACCAAGAAGGAGAATCTTGAGGTTGAACTTCCCATGTATGATCCTTCGAAGGGCCTTGTTGTCGATCTTGC[G
|A]GTCGTGGGAGGCGGCCCAGCAGGGCTTGCTGTTGCGCAACAGGTTTCAGAGGCAGGGCTTTCAGTTTGTGCAATTGACCCATCTCCCA[A|G]GTTGATTTGGCCCA
ACAATTATGGGGTTTGGGTGGATGAATTTGAGGCAATGGATTTGCTAGATTGTCTCGACACGACTTGGTCTGG[T|C]GCTGTCGT[G|T]TTCACCAATGAGCAATCAA
C[A|G]AAAGATCTTGCTCGACCTTATGCGAGGGTTAATAGAAAGCAACTCAAGTCAAAAATGTTGCAGAAATGCATTTCCAATGGTGTTAAGTTTCATGAAGCTAAAGT
TATTAAAGTTATACATGAGGAGTTCAAATCCTTGTTAATTTGCAATGATGGTGTGACCATTCAAGCTGCC[A|G]TTGTTCTTGATGC[C|T]ACTGGC[G|T]TCTCTC
GATGCCTTGTCCAATATGATAAGCCTTACAATCCAGGCTACCAGGTAGCTTATGGGATTTTAGCTGAGGTGGAGGAACATCCATTTGATGTTAACAAGATGGTGTTTATG
GACTGGAGAGATTC[A|G]CATCTGAATAACAATATG[A|G]TTTTGAAGGAGAGAAATAGCAAAATTCCTACATTTCTCTATGCAATGCCCTTTTCATCAAATCGGATA
TTTCTGGAGGAAACTTCTTTGGTAGC[T|A]CGACCTGG[G|T]TTACAAATGAGCGATATCCAGGAAAGAATGGA[G|C]GTAAGATTGAAGCACTTGGGAATAAAAGT
GAAGAGCATTGAAGAGGATGAGCATTGTGTCATTCCAATGGGTGGACCGCTGCCAGTTCTTCCTCAAAGAGTTGTTGGAATTGGTGGAACAGCAGGGATGGTGCACCCTT
CAACTGGATATATGGTAGCAAGAACTCTAGCAGC[G|A]GCACCTATTGTTGCTAGTGCAATAGTCCGGTG
Flanking sequence
(500 bp up- and downstream, with variants in flanking region not shown)		> (Cla97Chr04:15442480-15443480)
AGAAGTAGTTCTCTTTTGGAGCTTGTTCCTGAAACCAAGAAGGAGAATCTTGAGGTTGAACTTCCCATGTATGATCCTTCGAAGGGCCTTGTTGTCGATCTTGCGGTCGT
GGGAGGCGGCCCAGCAGGGCTTGCTGTTGCGCAACAGGTTTCAGAGGCAGGGCTTTCAGTTTGTGCAATTGACCCATCTCCCAAGTTGATTTGGCCCAACAATTATGGGG
TTTGGGTGGATGAATTTGAGGCAATGGATTTGCTAGATTGTCTCGACACGACTTGGTCTGGTGCTGTCGTGTTCACCAATGAGCAATCAACAAAAGATCTTGCTCGACCT
TATGCGAGGGTTAATAGAAAGCAACTCAAGTCAAAAATGTTGCAGAAATGCATTTCCAATGGTGTTAAGTTTCATGAAGCTAAAGTTATTAAAGTTATACATGAGGAGTT
CAAATCCTTGTTAATTTGCAATGATGGTGTGACCATTCAAGCTGCCATTGTTCTTGATGC[C|T]ACTGGCGTCTCTCGATGCCTTGTCCAATATGATAAGCCTTACAAT
CCAGGCTACCAGGTAGCTTATGGGATTTTAGCTGAGGTGGAGGAACATCCATTTGATGTTAACAAGATGGTGTTTATGGACTGGAGAGATTCACATCTGAATAACAATAT
GATTTTGAAGGAGAGAAATAGCAAAATTCCTACATTTCTCTATGCAATGCCCTTTTCATCAAATCGGATATTTCTGGAGGAAACTTCTTTGGTAGCTCGACCTGGGTTAC
AAATGAGCGATATCCAGGAAAGAATGGAGGTAAGATTGAAGCACTTGGGAATAAAAGTGAAGAGCATTGAAGAGGATGAGCATTGTGTCATTCCAATGGGTGGACCGCTG
CCAGTTCTTCCTCAAAGAGTTGTTGGAATTGGTGGAACAGCAGGGATGGTGCACCCTTCAACTGGATATATGGTAGCAAGAACTCTAGCAGCGGCACCTATTGTTGCTAG
TGCAATAGTCCGGTG
Allele frequency in different groups (in all samples)

Click the bars to get the allele information in individual accessions
Reference allele Reference allele Reference allele Reference allele Reference allele Reference allele Reference allele Alternative allele Alternative allele Alternative allele Alternative allele Alternative allele Alternative allele Alternative allele