Variant detail of Cla97Chr04:15442791 [Watermelon resequencing (SNP v3)]
| variant ID | Cla97Chr04_15442791 | |||||
| Genome position | Cla97Chr04:15442791 | |||||
| Allele (Ref/Alt) | A/G | |||||
| Annotation | synonymous variant (Cla97C04G070940) | |||||
| Flanking sequence (500 bp up- and downstream, with all variants shown) | >Cla97Chr04_15442791 (Cla97Chr04:15442291-15443291)
TCATTTGTTTGTTGTAAATCCATGGATACTTT[A|G]CTTAAAATCAATAACAAGTATGGTTTTCTGCAACCATTACATGGG[G|A]TTTCGGAAAAAGTGAGTGGTGTG AGGAGTACAAAGTTTCAGAGTCAGGAATTTGG[G|A]TTTGGTCATAGGAAGGGTCGTCTGAAATGGAGGAAAGGGGGTTGTCTTAATGTGAGAAGTAGT[T|G]CTCTT TTGGAGCTTGTTCCTGAAACCAAGAAGGAGAATCTTGAGGTTGAACTTCCCATGTATGATCCTTCGAAGGGCCTTGTTGTCGATCTTGC[G|A]GTCGTGGGAGGCGGCC CAGCAGGGCTTGCTGTTGCGCAACAGGTTTCAGAGGCAGGGCTTTCAGTTTGTGCAATTGACCCATCTCCCA[A|G]GTTGATTTGGCCCAACAATTATGGGGTTTGGGT GGATGAATTTGAGGCAATGGATTTGCTAGATTGTCTCGACACGACTTGGTCTGG[T|C]GCTGTCGT[G|T]TTCACCAATGAGCAATCAAC[A|G]AAAGATCTTGCTC GACCTTATGCGAGGGTTAATAGAAAGCAACTCAAGTCAAAAATGTTGCAGAAATGCATTTCCAATGGTGTTAAGTTTCATGAAGCTAAAGTTATTAAAGTTATACATGAG GAGTTCAAATCCTTGTTAATTTGCAATGATGGTGTGACCATTCAAGCTGCC[A|G]TTGTTCTTGATGC[C|T]ACTGGC[G|T]TCTCTCGATGCCTTGTCCAATATGA TAAGCCTTACAATCCAGGCTACCAGGTAGCTTATGGGATTTTAGCTGAGGTGGAGGAACATCCATTTGATGTTAACAAGATGGTGTTTATGGACTGGAGAGATTC[A|G] CATCTGAATAACAATATG[A|G]TTTTGAAGGAGAGAAATAGCAAAATTCCTACATTTCTCTATGCAATGCCCTTTTCATCAAATCGGATATTTCTGGAGGAAACTTCTT TGGTAGC[T|A]CGACCTGG[G|T]TTACAAATGAGCGATATCCAGGAAAGAATGGA[G|C]GTAAGATTGAAGCACTT Flanking sequence | (500 bp up- and downstream, with variants in flanking region not shown) > (Cla97Chr04:15442291-15443291)
| TCATTTGTTTGTTGTAAATCCATGGATACTTTACTTAAAATCAATAACAAGTATGGTTTTCTGCAACCATTACATGGGGTTTCGGAAAAAGTGAGTGGTGTGAGGAGTAC AAAGTTTCAGAGTCAGGAATTTGGGTTTGGTCATAGGAAGGGTCGTCTGAAATGGAGGAAAGGGGGTTGTCTTAATGTGAGAAGTAGTTCTCTTTTGGAGCTTGTTCCTG AAACCAAGAAGGAGAATCTTGAGGTTGAACTTCCCATGTATGATCCTTCGAAGGGCCTTGTTGTCGATCTTGCGGTCGTGGGAGGCGGCCCAGCAGGGCTTGCTGTTGCG CAACAGGTTTCAGAGGCAGGGCTTTCAGTTTGTGCAATTGACCCATCTCCCAAGTTGATTTGGCCCAACAATTATGGGGTTTGGGTGGATGAATTTGAGGCAATGGATTT GCTAGATTGTCTCGACACGACTTGGTCTGGTGCTGTCGTGTTCACCAATGAGCAATCAAC[A|G]AAAGATCTTGCTCGACCTTATGCGAGGGTTAATAGAAAGCAACTC AAGTCAAAAATGTTGCAGAAATGCATTTCCAATGGTGTTAAGTTTCATGAAGCTAAAGTTATTAAAGTTATACATGAGGAGTTCAAATCCTTGTTAATTTGCAATGATGG TGTGACCATTCAAGCTGCCATTGTTCTTGATGCCACTGGCGTCTCTCGATGCCTTGTCCAATATGATAAGCCTTACAATCCAGGCTACCAGGTAGCTTATGGGATTTTAG CTGAGGTGGAGGAACATCCATTTGATGTTAACAAGATGGTGTTTATGGACTGGAGAGATTCACATCTGAATAACAATATGATTTTGAAGGAGAGAAATAGCAAAATTCCT ACATTTCTCTATGCAATGCCCTTTTCATCAAATCGGATATTTCTGGAGGAAACTTCTTTGGTAGCTCGACCTGGGTTACAAATGAGCGATATCCAGGAAAGAATGGAGGT AAGATTGAAGCACTT Allele frequency in different groups (in all samples) | Click the bars to get the allele information in individual accessions
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