Variant detail of Cla97Chr04:15442770 [Watermelon resequencing (SNP v3)]

variant IDCla97Chr04_15442770
Genome positionCla97Chr04:15442770
Allele (Ref/Alt)G/T
Annotationsynonymous variant (Cla97C04G070940)
Flanking sequence
(500 bp up- and downstream, with all variants shown)		>Cla97Chr04_15442770 (Cla97Chr04:15442270-15443270)
T[T|G]TCTGTTGCTCTCTGTAGTTTCATTTGTTTGTTGTAAATCCATGGATACTTT[A|G]CTTAAAATCAATAACAAGTATGGTTTTCTGCAACCATTACATGGG[G|
A]TTTCGGAAAAAGTGAGTGGTGTGAGGAGTACAAAGTTTCAGAGTCAGGAATTTGG[G|A]TTTGGTCATAGGAAGGGTCGTCTGAAATGGAGGAAAGGGGGTTGTCTT
AATGTGAGAAGTAGT[T|G]CTCTTTTGGAGCTTGTTCCTGAAACCAAGAAGGAGAATCTTGAGGTTGAACTTCCCATGTATGATCCTTCGAAGGGCCTTGTTGTCGATC
TTGC[G|A]GTCGTGGGAGGCGGCCCAGCAGGGCTTGCTGTTGCGCAACAGGTTTCAGAGGCAGGGCTTTCAGTTTGTGCAATTGACCCATCTCCCA[A|G]GTTGATTT
GGCCCAACAATTATGGGGTTTGGGTGGATGAATTTGAGGCAATGGATTTGCTAGATTGTCTCGACACGACTTGGTCTGG[T|C]GCTGTCGT[G|T]TTCACCAATGAGC
AATCAAC[A|G]AAAGATCTTGCTCGACCTTATGCGAGGGTTAATAGAAAGCAACTCAAGTCAAAAATGTTGCAGAAATGCATTTCCAATGGTGTTAAGTTTCATGAAGC
TAAAGTTATTAAAGTTATACATGAGGAGTTCAAATCCTTGTTAATTTGCAATGATGGTGTGACCATTCAAGCTGCC[A|G]TTGTTCTTGATGC[C|T]ACTGGC[G|T]
TCTCTCGATGCCTTGTCCAATATGATAAGCCTTACAATCCAGGCTACCAGGTAGCTTATGGGATTTTAGCTGAGGTGGAGGAACATCCATTTGATGTTAACAAGATGGTG
TTTATGGACTGGAGAGATTC[A|G]CATCTGAATAACAATATG[A|G]TTTTGAAGGAGAGAAATAGCAAAATTCCTACATTTCTCTATGCAATGCCCTTTTCATCAAAT
CGGATATTTCTGGAGGAAACTTCTTTGGTAGC[T|A]CGACCTGG[G|T]TTACAAATGAGCGATATCCAGGAAAGAAT
Flanking sequence
(500 bp up- and downstream, with variants in flanking region not shown)		> (Cla97Chr04:15442270-15443270)
TTTCTGTTGCTCTCTGTAGTTTCATTTGTTTGTTGTAAATCCATGGATACTTTACTTAAAATCAATAACAAGTATGGTTTTCTGCAACCATTACATGGGGTTTCGGAAAA
AGTGAGTGGTGTGAGGAGTACAAAGTTTCAGAGTCAGGAATTTGGGTTTGGTCATAGGAAGGGTCGTCTGAAATGGAGGAAAGGGGGTTGTCTTAATGTGAGAAGTAGTT
CTCTTTTGGAGCTTGTTCCTGAAACCAAGAAGGAGAATCTTGAGGTTGAACTTCCCATGTATGATCCTTCGAAGGGCCTTGTTGTCGATCTTGCGGTCGTGGGAGGCGGC
CCAGCAGGGCTTGCTGTTGCGCAACAGGTTTCAGAGGCAGGGCTTTCAGTTTGTGCAATTGACCCATCTCCCAAGTTGATTTGGCCCAACAATTATGGGGTTTGGGTGGA
TGAATTTGAGGCAATGGATTTGCTAGATTGTCTCGACACGACTTGGTCTGGTGCTGTCGT[G|T]TTCACCAATGAGCAATCAACAAAAGATCTTGCTCGACCTTATGCG
AGGGTTAATAGAAAGCAACTCAAGTCAAAAATGTTGCAGAAATGCATTTCCAATGGTGTTAAGTTTCATGAAGCTAAAGTTATTAAAGTTATACATGAGGAGTTCAAATC
CTTGTTAATTTGCAATGATGGTGTGACCATTCAAGCTGCCATTGTTCTTGATGCCACTGGCGTCTCTCGATGCCTTGTCCAATATGATAAGCCTTACAATCCAGGCTACC
AGGTAGCTTATGGGATTTTAGCTGAGGTGGAGGAACATCCATTTGATGTTAACAAGATGGTGTTTATGGACTGGAGAGATTCACATCTGAATAACAATATGATTTTGAAG
GAGAGAAATAGCAAAATTCCTACATTTCTCTATGCAATGCCCTTTTCATCAAATCGGATATTTCTGGAGGAAACTTCTTTGGTAGCTCGACCTGGGTTACAAATGAGCGA
TATCCAGGAAAGAAT
Allele frequency in different groups (in all samples)

Click the bars to get the allele information in individual accessions
Reference allele Reference allele Reference allele Reference allele Reference allele Reference allele Reference allele Alternative allele Alternative allele Alternative allele Alternative allele Alternative allele Alternative allele Alternative allele