Variant detail of Cla97Chr04:15442761 [Watermelon resequencing (SNP v3)]

variant IDCla97Chr04_15442761
Genome positionCla97Chr04:15442761
Allele (Ref/Alt)T/C
Annotationsynonymous variant (Cla97C04G070940)
Flanking sequence
(500 bp up- and downstream, with all variants shown)		>Cla97Chr04_15442761 (Cla97Chr04:15442261-15443261)
ATAATTCTGT[T|G]TCTGTTGCTCTCTGTAGTTTCATTTGTTTGTTGTAAATCCATGGATACTTT[A|G]CTTAAAATCAATAACAAGTATGGTTTTCTGCAACCATTA
CATGGG[G|A]TTTCGGAAAAAGTGAGTGGTGTGAGGAGTACAAAGTTTCAGAGTCAGGAATTTGG[G|A]TTTGGTCATAGGAAGGGTCGTCTGAAATGGAGGAAAGGG
GGTTGTCTTAATGTGAGAAGTAGT[T|G]CTCTTTTGGAGCTTGTTCCTGAAACCAAGAAGGAGAATCTTGAGGTTGAACTTCCCATGTATGATCCTTCGAAGGGCCTTG
TTGTCGATCTTGC[G|A]GTCGTGGGAGGCGGCCCAGCAGGGCTTGCTGTTGCGCAACAGGTTTCAGAGGCAGGGCTTTCAGTTTGTGCAATTGACCCATCTCCCA[A|G
]GTTGATTTGGCCCAACAATTATGGGGTTTGGGTGGATGAATTTGAGGCAATGGATTTGCTAGATTGTCTCGACACGACTTGGTCTGG[T|C]GCTGTCGT[G|T]TTCA
CCAATGAGCAATCAAC[A|G]AAAGATCTTGCTCGACCTTATGCGAGGGTTAATAGAAAGCAACTCAAGTCAAAAATGTTGCAGAAATGCATTTCCAATGGTGTTAAGTT
TCATGAAGCTAAAGTTATTAAAGTTATACATGAGGAGTTCAAATCCTTGTTAATTTGCAATGATGGTGTGACCATTCAAGCTGCC[A|G]TTGTTCTTGATGC[C|T]AC
TGGC[G|T]TCTCTCGATGCCTTGTCCAATATGATAAGCCTTACAATCCAGGCTACCAGGTAGCTTATGGGATTTTAGCTGAGGTGGAGGAACATCCATTTGATGTTAAC
AAGATGGTGTTTATGGACTGGAGAGATTC[A|G]CATCTGAATAACAATATG[A|G]TTTTGAAGGAGAGAAATAGCAAAATTCCTACATTTCTCTATGCAATGCCCTTT
TCATCAAATCGGATATTTCTGGAGGAAACTTCTTTGGTAGC[T|A]CGACCTGG[G|T]TTACAAATGAGCGATATCCA
Flanking sequence
(500 bp up- and downstream, with variants in flanking region not shown)		> (Cla97Chr04:15442261-15443261)
ATAATTCTGTTTCTGTTGCTCTCTGTAGTTTCATTTGTTTGTTGTAAATCCATGGATACTTTACTTAAAATCAATAACAAGTATGGTTTTCTGCAACCATTACATGGGGT
TTCGGAAAAAGTGAGTGGTGTGAGGAGTACAAAGTTTCAGAGTCAGGAATTTGGGTTTGGTCATAGGAAGGGTCGTCTGAAATGGAGGAAAGGGGGTTGTCTTAATGTGA
GAAGTAGTTCTCTTTTGGAGCTTGTTCCTGAAACCAAGAAGGAGAATCTTGAGGTTGAACTTCCCATGTATGATCCTTCGAAGGGCCTTGTTGTCGATCTTGCGGTCGTG
GGAGGCGGCCCAGCAGGGCTTGCTGTTGCGCAACAGGTTTCAGAGGCAGGGCTTTCAGTTTGTGCAATTGACCCATCTCCCAAGTTGATTTGGCCCAACAATTATGGGGT
TTGGGTGGATGAATTTGAGGCAATGGATTTGCTAGATTGTCTCGACACGACTTGGTCTGG[T|C]GCTGTCGTGTTCACCAATGAGCAATCAACAAAAGATCTTGCTCGA
CCTTATGCGAGGGTTAATAGAAAGCAACTCAAGTCAAAAATGTTGCAGAAATGCATTTCCAATGGTGTTAAGTTTCATGAAGCTAAAGTTATTAAAGTTATACATGAGGA
GTTCAAATCCTTGTTAATTTGCAATGATGGTGTGACCATTCAAGCTGCCATTGTTCTTGATGCCACTGGCGTCTCTCGATGCCTTGTCCAATATGATAAGCCTTACAATC
CAGGCTACCAGGTAGCTTATGGGATTTTAGCTGAGGTGGAGGAACATCCATTTGATGTTAACAAGATGGTGTTTATGGACTGGAGAGATTCACATCTGAATAACAATATG
ATTTTGAAGGAGAGAAATAGCAAAATTCCTACATTTCTCTATGCAATGCCCTTTTCATCAAATCGGATATTTCTGGAGGAAACTTCTTTGGTAGCTCGACCTGGGTTACA
AATGAGCGATATCCA
Allele frequency in different groups (in all samples)

Click the bars to get the allele information in individual accessions
Reference allele Reference allele Reference allele Reference allele Reference allele Reference allele Reference allele Alternative allele Alternative allele Alternative allele Alternative allele Alternative allele Alternative allele Alternative allele