Variant detail of Cla97Chr04:15442584 [Watermelon resequencing (SNP v3)]

variant IDCla97Chr04_15442584
Genome positionCla97Chr04:15442584
Allele (Ref/Alt)G/A
Annotationsynonymous variant (Cla97C04G070940)
Flanking sequence
(500 bp up- and downstream, with all variants shown)		>Cla97Chr04_15442584 (Cla97Chr04:15442084-15443084)
TCATGTTTTAATCACTGAATTCCATTGAAGTTATCCCTGTTCTTCTGGAGTTCTTGGGGATTTGTTGAAATTTTTGAGCACCCCATTTCGATTCTTCATCT[A|G]TTGG
TTTATTACTT[A|G]G[G|T]TTTGTTTGAGATTTCTGGATATTGGGTCTCTG[T|C]AGGGATTCCCTTTT[T|C]GACTTTGCTGATAATTCTGT[T|G]TCTGTTGC
TCTCTGTAGTTTCATTTGTTTGTTGTAAATCCATGGATACTTT[A|G]CTTAAAATCAATAACAAGTATGGTTTTCTGCAACCATTACATGGG[G|A]TTTCGGAAAAAG
TGAGTGGTGTGAGGAGTACAAAGTTTCAGAGTCAGGAATTTGG[G|A]TTTGGTCATAGGAAGGGTCGTCTGAAATGGAGGAAAGGGGGTTGTCTTAATGTGAGAAGTAG
T[T|G]CTCTTTTGGAGCTTGTTCCTGAAACCAAGAAGGAGAATCTTGAGGTTGAACTTCCCATGTATGATCCTTCGAAGGGCCTTGTTGTCGATCTTGC[G|A]GTCGT
GGGAGGCGGCCCAGCAGGGCTTGCTGTTGCGCAACAGGTTTCAGAGGCAGGGCTTTCAGTTTGTGCAATTGACCCATCTCCCA[A|G]GTTGATTTGGCCCAACAATTAT
GGGGTTTGGGTGGATGAATTTGAGGCAATGGATTTGCTAGATTGTCTCGACACGACTTGGTCTGG[T|C]GCTGTCGT[G|T]TTCACCAATGAGCAATCAAC[A|G]AA
AGATCTTGCTCGACCTTATGCGAGGGTTAATAGAAAGCAACTCAAGTCAAAAATGTTGCAGAAATGCATTTCCAATGGTGTTAAGTTTCATGAAGCTAAAGTTATTAAAG
TTATACATGAGGAGTTCAAATCCTTGTTAATTTGCAATGATGGTGTGACCATTCAAGCTGCC[A|G]TTGTTCTTGATGC[C|T]ACTGGC[G|T]TCTCTCGATGCCTT
GTCCAATATGATAAGCCTTACAATCCAGGCTACCAGGTAGCTTATGGGATTTTAGCTGAGGTGGAGGAACATCCATTTGATGT
Flanking sequence
(500 bp up- and downstream, with variants in flanking region not shown)		> (Cla97Chr04:15442084-15443084)
TCATGTTTTAATCACTGAATTCCATTGAAGTTATCCCTGTTCTTCTGGAGTTCTTGGGGATTTGTTGAAATTTTTGAGCACCCCATTTCGATTCTTCATCTATTGGTTTA
TTACTTAGGTTTGTTTGAGATTTCTGGATATTGGGTCTCTGTAGGGATTCCCTTTTTGACTTTGCTGATAATTCTGTTTCTGTTGCTCTCTGTAGTTTCATTTGTTTGTT
GTAAATCCATGGATACTTTACTTAAAATCAATAACAAGTATGGTTTTCTGCAACCATTACATGGGGTTTCGGAAAAAGTGAGTGGTGTGAGGAGTACAAAGTTTCAGAGT
CAGGAATTTGGGTTTGGTCATAGGAAGGGTCGTCTGAAATGGAGGAAAGGGGGTTGTCTTAATGTGAGAAGTAGTTCTCTTTTGGAGCTTGTTCCTGAAACCAAGAAGGA
GAATCTTGAGGTTGAACTTCCCATGTATGATCCTTCGAAGGGCCTTGTTGTCGATCTTGC[G|A]GTCGTGGGAGGCGGCCCAGCAGGGCTTGCTGTTGCGCAACAGGTT
TCAGAGGCAGGGCTTTCAGTTTGTGCAATTGACCCATCTCCCAAGTTGATTTGGCCCAACAATTATGGGGTTTGGGTGGATGAATTTGAGGCAATGGATTTGCTAGATTG
TCTCGACACGACTTGGTCTGGTGCTGTCGTGTTCACCAATGAGCAATCAACAAAAGATCTTGCTCGACCTTATGCGAGGGTTAATAGAAAGCAACTCAAGTCAAAAATGT
TGCAGAAATGCATTTCCAATGGTGTTAAGTTTCATGAAGCTAAAGTTATTAAAGTTATACATGAGGAGTTCAAATCCTTGTTAATTTGCAATGATGGTGTGACCATTCAA
GCTGCCATTGTTCTTGATGCCACTGGCGTCTCTCGATGCCTTGTCCAATATGATAAGCCTTACAATCCAGGCTACCAGGTAGCTTATGGGATTTTAGCTGAGGTGGAGGA
ACATCCATTTGATGT
Allele frequency in different groups (in all samples)

Click the bars to get the allele information in individual accessions
Reference allele Reference allele Reference allele Reference allele Reference allele Reference allele Reference allele Alternative allele Alternative allele Alternative allele Alternative allele Alternative allele Alternative allele Alternative allele