Variant detail of Cla97Chr04:15442489 [Watermelon resequencing (SNP v3)]

variant IDCla97Chr04_15442489
Genome positionCla97Chr04:15442489
Allele (Ref/Alt)T/G
Annotationmissense variant (Cla97C04G070940)
Flanking sequence
(500 bp up- and downstream, with all variants shown)		>Cla97Chr04_15442489 (Cla97Chr04:15441989-15442989)
TGGGACTCGTCATTCGCGCTCCACATCCCTCCAATCCATAACAACCAAATGGAGCTCCTTCCCGTCCTCAGGTTCGCCTCCAAACACACGCCTCTTCATGTTTTAATCAC
TGAATTCCATTGAAGTTATCCCTGTTCTTCTGGAGTTCTTGGGGATTTGTTGAAATTTTTGAGCACCCCATTTCGATTCTTCATCT[A|G]TTGGTTTATTACTT[A|G]
G[G|T]TTTGTTTGAGATTTCTGGATATTGGGTCTCTG[T|C]AGGGATTCCCTTTT[T|C]GACTTTGCTGATAATTCTGT[T|G]TCTGTTGCTCTCTGTAGTTTCAT
TTGTTTGTTGTAAATCCATGGATACTTT[A|G]CTTAAAATCAATAACAAGTATGGTTTTCTGCAACCATTACATGGG[G|A]TTTCGGAAAAAGTGAGTGGTGTGAGGA
GTACAAAGTTTCAGAGTCAGGAATTTGG[G|A]TTTGGTCATAGGAAGGGTCGTCTGAAATGGAGGAAAGGGGGTTGTCTTAATGTGAGAAGTAGT[T|G]CTCTTTTGG
AGCTTGTTCCTGAAACCAAGAAGGAGAATCTTGAGGTTGAACTTCCCATGTATGATCCTTCGAAGGGCCTTGTTGTCGATCTTGC[G|A]GTCGTGGGAGGCGGCCCAGC
AGGGCTTGCTGTTGCGCAACAGGTTTCAGAGGCAGGGCTTTCAGTTTGTGCAATTGACCCATCTCCCA[A|G]GTTGATTTGGCCCAACAATTATGGGGTTTGGGTGGAT
GAATTTGAGGCAATGGATTTGCTAGATTGTCTCGACACGACTTGGTCTGG[T|C]GCTGTCGT[G|T]TTCACCAATGAGCAATCAAC[A|G]AAAGATCTTGCTCGACC
TTATGCGAGGGTTAATAGAAAGCAACTCAAGTCAAAAATGTTGCAGAAATGCATTTCCAATGGTGTTAAGTTTCATGAAGCTAAAGTTATTAAAGTTATACATGAGGAGT
TCAAATCCTTGTTAATTTGCAATGATGGTGTGACCATTCAAGCTGCC[A|G]TTGTTCTTGATGC[C|T]ACTGGC[G|T]TC
Flanking sequence
(500 bp up- and downstream, with variants in flanking region not shown)		> (Cla97Chr04:15441989-15442989)
TGGGACTCGTCATTCGCGCTCCACATCCCTCCAATCCATAACAACCAAATGGAGCTCCTTCCCGTCCTCAGGTTCGCCTCCAAACACACGCCTCTTCATGTTTTAATCAC
TGAATTCCATTGAAGTTATCCCTGTTCTTCTGGAGTTCTTGGGGATTTGTTGAAATTTTTGAGCACCCCATTTCGATTCTTCATCTATTGGTTTATTACTTAGGTTTGTT
TGAGATTTCTGGATATTGGGTCTCTGTAGGGATTCCCTTTTTGACTTTGCTGATAATTCTGTTTCTGTTGCTCTCTGTAGTTTCATTTGTTTGTTGTAAATCCATGGATA
CTTTACTTAAAATCAATAACAAGTATGGTTTTCTGCAACCATTACATGGGGTTTCGGAAAAAGTGAGTGGTGTGAGGAGTACAAAGTTTCAGAGTCAGGAATTTGGGTTT
GGTCATAGGAAGGGTCGTCTGAAATGGAGGAAAGGGGGTTGTCTTAATGTGAGAAGTAGT[T|G]CTCTTTTGGAGCTTGTTCCTGAAACCAAGAAGGAGAATCTTGAGG
TTGAACTTCCCATGTATGATCCTTCGAAGGGCCTTGTTGTCGATCTTGCGGTCGTGGGAGGCGGCCCAGCAGGGCTTGCTGTTGCGCAACAGGTTTCAGAGGCAGGGCTT
TCAGTTTGTGCAATTGACCCATCTCCCAAGTTGATTTGGCCCAACAATTATGGGGTTTGGGTGGATGAATTTGAGGCAATGGATTTGCTAGATTGTCTCGACACGACTTG
GTCTGGTGCTGTCGTGTTCACCAATGAGCAATCAACAAAAGATCTTGCTCGACCTTATGCGAGGGTTAATAGAAAGCAACTCAAGTCAAAAATGTTGCAGAAATGCATTT
CCAATGGTGTTAAGTTTCATGAAGCTAAAGTTATTAAAGTTATACATGAGGAGTTCAAATCCTTGTTAATTTGCAATGATGGTGTGACCATTCAAGCTGCCATTGTTCTT
GATGCCACTGGCGTC
Allele frequency in different groups (in all samples)

Click the bars to get the allele information in individual accessions
Reference allele Reference allele Reference allele Reference allele Reference allele Reference allele Reference allele Alternative allele Alternative allele Alternative allele Alternative allele Alternative allele Alternative allele Alternative allele