Variant detail of Cla97Chr04:15442425 [Watermelon resequencing (SNP v3)]

variant IDCla97Chr04_15442425
Genome positionCla97Chr04:15442425
Allele (Ref/Alt)G/A
Annotationsynonymous variant (Cla97C04G070940)
Flanking sequence
(500 bp up- and downstream, with all variants shown)		>Cla97Chr04_15442425 (Cla97Chr04:15441925-15442925)
TTCTTC[A|G]ATTCCCCTAATTCCATCTCTTGGAGAACAGTGGCCGGCGAAGTCACTTCGTCCAAATTGGGACTCGTCATTCGCGCTCCACATCCCTCCAATCCATAAC
AACCAAATGGAGCTCCTTCCCGTCCTCAGGTTCGCCTCCAAACACACGCCTCTTCATGTTTTAATCACTGAATTCCATTGAAGTTATCCCTGTTCTTCTGGAGTTCTTGG
GGATTTGTTGAAATTTTTGAGCACCCCATTTCGATTCTTCATCT[A|G]TTGGTTTATTACTT[A|G]G[G|T]TTTGTTTGAGATTTCTGGATATTGGGTCTCTG[T|C
]AGGGATTCCCTTTT[T|C]GACTTTGCTGATAATTCTGT[T|G]TCTGTTGCTCTCTGTAGTTTCATTTGTTTGTTGTAAATCCATGGATACTTT[A|G]CTTAAAATC
AATAACAAGTATGGTTTTCTGCAACCATTACATGGG[G|A]TTTCGGAAAAAGTGAGTGGTGTGAGGAGTACAAAGTTTCAGAGTCAGGAATTTGG[G|A]TTTGGTCAT
AGGAAGGGTCGTCTGAAATGGAGGAAAGGGGGTTGTCTTAATGTGAGAAGTAGT[T|G]CTCTTTTGGAGCTTGTTCCTGAAACCAAGAAGGAGAATCTTGAGGTTGAAC
TTCCCATGTATGATCCTTCGAAGGGCCTTGTTGTCGATCTTGC[G|A]GTCGTGGGAGGCGGCCCAGCAGGGCTTGCTGTTGCGCAACAGGTTTCAGAGGCAGGGCTTTC
AGTTTGTGCAATTGACCCATCTCCCA[A|G]GTTGATTTGGCCCAACAATTATGGGGTTTGGGTGGATGAATTTGAGGCAATGGATTTGCTAGATTGTCTCGACACGACT
TGGTCTGG[T|C]GCTGTCGT[G|T]TTCACCAATGAGCAATCAAC[A|G]AAAGATCTTGCTCGACCTTATGCGAGGGTTAATAGAAAGCAACTCAAGTCAAAAATGTT
GCAGAAATGCATTTCCAATGGTGTTAAGTTTCATGAAGCTAAAGTTATTAAAGTTATACATGAGGAGTTCAAATC
Flanking sequence
(500 bp up- and downstream, with variants in flanking region not shown)		> (Cla97Chr04:15441925-15442925)
TTCTTCAATTCCCCTAATTCCATCTCTTGGAGAACAGTGGCCGGCGAAGTCACTTCGTCCAAATTGGGACTCGTCATTCGCGCTCCACATCCCTCCAATCCATAACAACC
AAATGGAGCTCCTTCCCGTCCTCAGGTTCGCCTCCAAACACACGCCTCTTCATGTTTTAATCACTGAATTCCATTGAAGTTATCCCTGTTCTTCTGGAGTTCTTGGGGAT
TTGTTGAAATTTTTGAGCACCCCATTTCGATTCTTCATCTATTGGTTTATTACTTAGGTTTGTTTGAGATTTCTGGATATTGGGTCTCTGTAGGGATTCCCTTTTTGACT
TTGCTGATAATTCTGTTTCTGTTGCTCTCTGTAGTTTCATTTGTTTGTTGTAAATCCATGGATACTTTACTTAAAATCAATAACAAGTATGGTTTTCTGCAACCATTACA
TGGGGTTTCGGAAAAAGTGAGTGGTGTGAGGAGTACAAAGTTTCAGAGTCAGGAATTTGG[G|A]TTTGGTCATAGGAAGGGTCGTCTGAAATGGAGGAAAGGGGGTTGT
CTTAATGTGAGAAGTAGTTCTCTTTTGGAGCTTGTTCCTGAAACCAAGAAGGAGAATCTTGAGGTTGAACTTCCCATGTATGATCCTTCGAAGGGCCTTGTTGTCGATCT
TGCGGTCGTGGGAGGCGGCCCAGCAGGGCTTGCTGTTGCGCAACAGGTTTCAGAGGCAGGGCTTTCAGTTTGTGCAATTGACCCATCTCCCAAGTTGATTTGGCCCAACA
ATTATGGGGTTTGGGTGGATGAATTTGAGGCAATGGATTTGCTAGATTGTCTCGACACGACTTGGTCTGGTGCTGTCGTGTTCACCAATGAGCAATCAACAAAAGATCTT
GCTCGACCTTATGCGAGGGTTAATAGAAAGCAACTCAAGTCAAAAATGTTGCAGAAATGCATTTCCAATGGTGTTAAGTTTCATGAAGCTAAAGTTATTAAAGTTATACA
TGAGGAGTTCAAATC
Allele frequency in different groups (in all samples)

Click the bars to get the allele information in individual accessions
Reference allele Reference allele Reference allele Reference allele Reference allele Reference allele Reference allele Alternative allele Alternative allele Alternative allele Alternative allele Alternative allele Alternative allele Alternative allele