Variant detail of Cla97Chr04:15442369 [Watermelon resequencing (SNP v3)]
| variant ID | Cla97Chr04_15442369 | |||||
| Genome position | Cla97Chr04:15442369 | |||||
| Allele (Ref/Alt) | G/A | |||||
| Annotation | missense variant (Cla97C04G070940) | |||||
| Flanking sequence (500 bp up- and downstream, with all variants shown) | >Cla97Chr04_15442369 (Cla97Chr04:15441869-15442869)
AATTGGCGAGAATATGGAGCCATCTTCCAACTGTGGACGCTGACAAACTCCCAATCTTCTTC[A|G]ATTCCCCTAATTCCATCTCTTGGAGAACAGTGGCCGGCGAAGT CACTTCGTCCAAATTGGGACTCGTCATTCGCGCTCCACATCCCTCCAATCCATAACAACCAAATGGAGCTCCTTCCCGTCCTCAGGTTCGCCTCCAAACACACGCCTCTT CATGTTTTAATCACTGAATTCCATTGAAGTTATCCCTGTTCTTCTGGAGTTCTTGGGGATTTGTTGAAATTTTTGAGCACCCCATTTCGATTCTTCATCT[A|G]TTGGT TTATTACTT[A|G]G[G|T]TTTGTTTGAGATTTCTGGATATTGGGTCTCTG[T|C]AGGGATTCCCTTTT[T|C]GACTTTGCTGATAATTCTGT[T|G]TCTGTTGCT CTCTGTAGTTTCATTTGTTTGTTGTAAATCCATGGATACTTT[A|G]CTTAAAATCAATAACAAGTATGGTTTTCTGCAACCATTACATGGG[G|A]TTTCGGAAAAAGT GAGTGGTGTGAGGAGTACAAAGTTTCAGAGTCAGGAATTTGG[G|A]TTTGGTCATAGGAAGGGTCGTCTGAAATGGAGGAAAGGGGGTTGTCTTAATGTGAGAAGTAGT [T|G]CTCTTTTGGAGCTTGTTCCTGAAACCAAGAAGGAGAATCTTGAGGTTGAACTTCCCATGTATGATCCTTCGAAGGGCCTTGTTGTCGATCTTGC[G|A]GTCGTG GGAGGCGGCCCAGCAGGGCTTGCTGTTGCGCAACAGGTTTCAGAGGCAGGGCTTTCAGTTTGTGCAATTGACCCATCTCCCA[A|G]GTTGATTTGGCCCAACAATTATG GGGTTTGGGTGGATGAATTTGAGGCAATGGATTTGCTAGATTGTCTCGACACGACTTGGTCTGG[T|C]GCTGTCGT[G|T]TTCACCAATGAGCAATCAAC[A|G]AAA GATCTTGCTCGACCTTATGCGAGGGTTAATAGAAAGCAACTCAAGTCAAAAATGTTGCAGAAATGCATTTCCAAT Flanking sequence | (500 bp up- and downstream, with variants in flanking region not shown) > (Cla97Chr04:15441869-15442869)
| AATTGGCGAGAATATGGAGCCATCTTCCAACTGTGGACGCTGACAAACTCCCAATCTTCTTCAATTCCCCTAATTCCATCTCTTGGAGAACAGTGGCCGGCGAAGTCACT TCGTCCAAATTGGGACTCGTCATTCGCGCTCCACATCCCTCCAATCCATAACAACCAAATGGAGCTCCTTCCCGTCCTCAGGTTCGCCTCCAAACACACGCCTCTTCATG TTTTAATCACTGAATTCCATTGAAGTTATCCCTGTTCTTCTGGAGTTCTTGGGGATTTGTTGAAATTTTTGAGCACCCCATTTCGATTCTTCATCTATTGGTTTATTACT TAGGTTTGTTTGAGATTTCTGGATATTGGGTCTCTGTAGGGATTCCCTTTTTGACTTTGCTGATAATTCTGTTTCTGTTGCTCTCTGTAGTTTCATTTGTTTGTTGTAAA TCCATGGATACTTTACTTAAAATCAATAACAAGTATGGTTTTCTGCAACCATTACATGGG[G|A]TTTCGGAAAAAGTGAGTGGTGTGAGGAGTACAAAGTTTCAGAGTC AGGAATTTGGGTTTGGTCATAGGAAGGGTCGTCTGAAATGGAGGAAAGGGGGTTGTCTTAATGTGAGAAGTAGTTCTCTTTTGGAGCTTGTTCCTGAAACCAAGAAGGAG AATCTTGAGGTTGAACTTCCCATGTATGATCCTTCGAAGGGCCTTGTTGTCGATCTTGCGGTCGTGGGAGGCGGCCCAGCAGGGCTTGCTGTTGCGCAACAGGTTTCAGA GGCAGGGCTTTCAGTTTGTGCAATTGACCCATCTCCCAAGTTGATTTGGCCCAACAATTATGGGGTTTGGGTGGATGAATTTGAGGCAATGGATTTGCTAGATTGTCTCG ACACGACTTGGTCTGGTGCTGTCGTGTTCACCAATGAGCAATCAACAAAAGATCTTGCTCGACCTTATGCGAGGGTTAATAGAAAGCAACTCAAGTCAAAAATGTTGCAG AAATGCATTTCCAAT Allele frequency in different groups (in all samples) | Click the bars to get the allele information in individual accessions
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