Variant detail of Cla97Chr04:15442323 [Watermelon resequencing (SNP v3)]
| variant ID | Cla97Chr04_15442323 | |||||
| Genome position | Cla97Chr04:15442323 | |||||
| Allele (Ref/Alt) | A/G | |||||
| Annotation | synonymous variant (Cla97C04G070940) | |||||
| Flanking sequence (500 bp up- and downstream, with all variants shown) | >Cla97Chr04_15442323 (Cla97Chr04:15441823-15442823)
GCGAGCGATATTCATTCTCAGGTCGCTATCAGTTATCTCCACCATTAATTGGCGAGAATATGGAGCCATCTTCCAACTGTGGACGCTGACAAACTCCCAATCTTCTTC[A |G]ATTCCCCTAATTCCATCTCTTGGAGAACAGTGGCCGGCGAAGTCACTTCGTCCAAATTGGGACTCGTCATTCGCGCTCCACATCCCTCCAATCCATAACAACCAAAT GGAGCTCCTTCCCGTCCTCAGGTTCGCCTCCAAACACACGCCTCTTCATGTTTTAATCACTGAATTCCATTGAAGTTATCCCTGTTCTTCTGGAGTTCTTGGGGATTTGT TGAAATTTTTGAGCACCCCATTTCGATTCTTCATCT[A|G]TTGGTTTATTACTT[A|G]G[G|T]TTTGTTTGAGATTTCTGGATATTGGGTCTCTG[T|C]AGGGATT CCCTTTT[T|C]GACTTTGCTGATAATTCTGT[T|G]TCTGTTGCTCTCTGTAGTTTCATTTGTTTGTTGTAAATCCATGGATACTTT[A|G]CTTAAAATCAATAACAA GTATGGTTTTCTGCAACCATTACATGGG[G|A]TTTCGGAAAAAGTGAGTGGTGTGAGGAGTACAAAGTTTCAGAGTCAGGAATTTGG[G|A]TTTGGTCATAGGAAGGG TCGTCTGAAATGGAGGAAAGGGGGTTGTCTTAATGTGAGAAGTAGT[T|G]CTCTTTTGGAGCTTGTTCCTGAAACCAAGAAGGAGAATCTTGAGGTTGAACTTCCCATG TATGATCCTTCGAAGGGCCTTGTTGTCGATCTTGC[G|A]GTCGTGGGAGGCGGCCCAGCAGGGCTTGCTGTTGCGCAACAGGTTTCAGAGGCAGGGCTTTCAGTTTGTG CAATTGACCCATCTCCCA[A|G]GTTGATTTGGCCCAACAATTATGGGGTTTGGGTGGATGAATTTGAGGCAATGGATTTGCTAGATTGTCTCGACACGACTTGGTCTGG [T|C]GCTGTCGT[G|T]TTCACCAATGAGCAATCAAC[A|G]AAAGATCTTGCTCGACCTTATGCGAGGGTTAA Flanking sequence | (500 bp up- and downstream, with variants in flanking region not shown) > (Cla97Chr04:15441823-15442823)
| GCGAGCGATATTCATTCTCAGGTCGCTATCAGTTATCTCCACCATTAATTGGCGAGAATATGGAGCCATCTTCCAACTGTGGACGCTGACAAACTCCCAATCTTCTTCAA TTCCCCTAATTCCATCTCTTGGAGAACAGTGGCCGGCGAAGTCACTTCGTCCAAATTGGGACTCGTCATTCGCGCTCCACATCCCTCCAATCCATAACAACCAAATGGAG CTCCTTCCCGTCCTCAGGTTCGCCTCCAAACACACGCCTCTTCATGTTTTAATCACTGAATTCCATTGAAGTTATCCCTGTTCTTCTGGAGTTCTTGGGGATTTGTTGAA ATTTTTGAGCACCCCATTTCGATTCTTCATCTATTGGTTTATTACTTAGGTTTGTTTGAGATTTCTGGATATTGGGTCTCTGTAGGGATTCCCTTTTTGACTTTGCTGAT AATTCTGTTTCTGTTGCTCTCTGTAGTTTCATTTGTTTGTTGTAAATCCATGGATACTTT[A|G]CTTAAAATCAATAACAAGTATGGTTTTCTGCAACCATTACATGGG GTTTCGGAAAAAGTGAGTGGTGTGAGGAGTACAAAGTTTCAGAGTCAGGAATTTGGGTTTGGTCATAGGAAGGGTCGTCTGAAATGGAGGAAAGGGGGTTGTCTTAATGT GAGAAGTAGTTCTCTTTTGGAGCTTGTTCCTGAAACCAAGAAGGAGAATCTTGAGGTTGAACTTCCCATGTATGATCCTTCGAAGGGCCTTGTTGTCGATCTTGCGGTCG TGGGAGGCGGCCCAGCAGGGCTTGCTGTTGCGCAACAGGTTTCAGAGGCAGGGCTTTCAGTTTGTGCAATTGACCCATCTCCCAAGTTGATTTGGCCCAACAATTATGGG GTTTGGGTGGATGAATTTGAGGCAATGGATTTGCTAGATTGTCTCGACACGACTTGGTCTGGTGCTGTCGTGTTCACCAATGAGCAATCAACAAAAGATCTTGCTCGACC TTATGCGAGGGTTAA Allele frequency in different groups (in all samples) | Click the bars to get the allele information in individual accessions
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