| PRJNA376073: Transcriptome responses to GA3 (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SRX2577785 | Cucumis sativus | 13_3B | Shoot apices without GA3 treatment | 68.34 |
| SRX2577783 | Cucumis sativus | 13_3B | Shoot apices treated with GA3 for 6 h | 58.12 |
| SRX2577781 | Cucumis sativus | 13_3B | Shoot apices treated with GA3 for 12 h | 67.34 |
|
| PRJNA613788: Transcriptome response to sugar treatment (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN14419958 | Cucumis sativus | ZK | Non-pollinated fruit | 96.11 |
| SAMN14419952 | Cucumis sativus | ZK | Fruit at one day after anthesis treated with fructose | 103.03 |
| SAMN14419954 | Cucumis sativus | ZK | Fruit at one day after anthesis treated with glucose | 91.28 |
| SAMN14419956 | Cucumis sativus | ZK | Fruit at one day after anthesis treated with sucrose | 94 |
|
| PRJNA667293: Transcriptome profiling of lateral root development regulated by GA3 (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN16365205 | Cucumis sativus | Daqingba | Roots of seedlings with mock treatment at 2 days after germination | 64.66 |
| SAMN16365207 | Cucumis sativus | Daqingba | Roots of seedlings treated with 50 uM GA3 at 2 days after germination | 83.54 |
| SAMN16365210 | Cucumis sativus | Daqingba | Roots of seedlings with mock treatment at 3 days after germination | 89.91 |
| SAMN16365213 | Cucumis sativus | Daqingba | Roots of seedlings treated with 50 uM GA3 at 3 days after germination | 105.67 |
| SAMN16365216 | Cucumis sativus | Daqingba | Roots of seedlings with mock treatment at 5 days after germination | 94.9 |
| SAMN16365219 | Cucumis sativus | Daqingba | Roots of seedlings treated with 50 uM GA3 at 5 days after germination | 123.32 |
|
| PRJNA782544: Transcriptome responses to ethrel (non-strand-specific) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN23383751 | Cucumis sativus | Xinchun No. 4 | Explants treated with 0.5 uM ethrel for 48 hours | 89.13 |
| SAMN23383748 | Cucumis sativus | Xinchun No. 4 | Explants treated with distilled water for 48 hours | 90.66 |
|
| PRJNA316747: Transcriptomes of cucumber roots inoculated by AMF (Rhizophagus irregularis) under low temperature (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN04589924 | Cucumis sativus | Zhongnong No. 26 | Root of non-inoculated plant under normal temperature | 57.8 |
| SAMN04589926 | Cucumis sativus | Zhongnong No. 26 | Root of plant inoculated with AMF R. irregularis under normal temperature | 76.81 |
| SAMN04589925 | Cucumis sativus | Zhongnong No. 26 | Root of non-inoculated plant under low temperature | 60.42 |
| SAMN04589927 | Cucumis sativus | Zhongnong No. 26 | Root of plant inoculated with AMF R. irregularis under low temperature | 79.52 |
|
| PRJNA438923: Transcriptome responses to chilling stress (non-strand-specific) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN08731966 | Cucumis sativus | Cu-01 | Leaves of untreated plants | 35.04 |
| SAMN08731973 | Cucumis sativus | Cu-01 | Leaves of plants exposed to an air temperature of 6℃ for 2 h | 27.67 |
| SAMN08731970 | Cucumis sativus | Cu-01 | Leaves of plants exposed to an air temperature of 6℃ for 6 h | 27.44 |
| SAMN08731967 | Cucumis sativus | Cu-01 | Leaves of plants exposed to an air temperature of 6℃ for 12 h | 31.38 |
|
| PRJNA701131: Transcriptome responses of grafted cucumber to cold stress (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN17848873 | Cucumis sativus | Jinyou 35 | Leaves of cucumber grafted on pumpkin under normal temperature (25 ℃) | 94.5 |
| SAMN17848870 | Cucumis sativus | Jinyou 35 | Leaves of homografted cucumber under normal temperature (25 ℃) | 94.11 |
| SAMN17848879 | Cucumis sativus | Jinyou 35 | Leaves of cucumber grafted on pumpkin under cold temperature (5 ℃) | 78.08 |
| SAMN17848876 | Cucumis sativus | Jinyou 35 | Leaves of homografted cucumber under cold temperature (5 ℃) | 66.69 |
|
| PRJNA817708: Transcriptome responses to cold stress (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN26806305 | Cucumis sativus | CT90 | Leaf of tolerant line at 24h after cold treatment of 6 C | 62.18 |
| SAMN26806311 | Cucumis sativus | CT57 | Leaf of sensitive line at 24h after cold treatment of 6 C | 54.47 |
| SAMN26806308 | Cucumis sativus | CT90 | Root of tolerant line at 24h after cold treatment of 6 C | 164.4 |
| SAMN26806314 | Cucumis sativus | CT57 | Root of sensitive line at 24h after cold treatment of 6 C | 145.82 |
|
| PRJNA720243: Transcriptome response of grafted cucumber to drought stress (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN18643059 | Cucumis sativus | EC1 | Leaf of homografted cucumber plant under control conditions | 16.15 |
| SAMN18643060 | Cucumis sativus | EC1 | Leaf of homografted cucumber plant under drought stress | 26.85 |
| SAMN18643061 | Cucumis sativus | EC1 | Leaf of cucumber plant grafted onto Cucurbits moschata under control conditions | 23.98 |
| SAMN18643062 | Cucumis sativus | EC1 | Leaf of cucumber plant grafted onto Cucurbits moschata under drought stress | 30.05 |
|
| PRJEB7612: Transcriptome response to silicon treatment (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMEA3105050 | Cucumis sativus | B10 | Leaves and stems of untreated plants | 45.78 |
| SAMEA3105054 | Cucumis sativus | B10 | Leaves and stems of plants under silicon treatment | 51.02 |
|
| PRJNA307279: Transcriptome profiles of grafted plants under Pi stress (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN04457411 | Cucumis sativus | Chinese Long | Developing leaf of homo-grafted cucumber plants (with mature leaves removed) under +Pi for 24 h | 52.52 |
| SAMN04457412 | Cucumis sativus | Chinese Long | Developing leaf of homo-grafted cucumber plants (with mature leaves removed) under -Pi for 24 h | 44.98 |
| SAMN04457417 | Cucumis sativus | Chinese Long | Developing leaf of homo-grafted cucumber plants under +Pi for 24 h | 56.71 |
| SAMN04457418 | Cucumis sativus | Chinese Long | Developing leaf of homo-grafted cucumber plants under -Pi for 24 h | 52.15 |
| SAMN04457423 | Cucumis sativus | Chinese Long | Developing leaf of non-grafted cucumber plants under +Pi for 24 h | 51.44 |
| SAMN04457424 | Cucumis sativus | Chinese Long | Developing leaf of non-grafted cucumber plants under -Pi for 24 h | 57.73 |
| SAMN04457413 | Cucumis sativus | Chinese Long | Shoot apex of homo-grafted cucumber plants (with mature leaves removed) under +Pi for 24 h | 64.01 |
| SAMN04457414 | Cucumis sativus | Chinese Long | Shoot apex of homo-grafted cucumber plants (with mature leaves removed) under -Pi for 24 h | 63.51 |
| SAMN04457419 | Cucumis sativus | Chinese Long | Shoot apex of homo-grafted cucumber plants under +Pi for 24 h | 68.73 |
| SAMN04457420 | Cucumis sativus | Chinese Long | Shoot apex of homo-grafted cucumber plants under -Pi for 24 h | 68.78 |
| SAMN04457425 | Cucumis sativus | Chinese Long | Shoot apex of non-grafted cucumber plants under +Pi for 24 h | 58.01 |
| SAMN04457426 | Cucumis sativus | Chinese Long | Shoot apex of non-grafted cucumber plants under -Pi for 24 h | 61.42 |
| SAMN04457415 | Cucumis sativus | Chinese Long | Root of homo-grafted cucumber plants (with stock leaves removed) under +Pi for 24 h | 63.66 |
| SAMN04457416 | Cucumis sativus | Chinese Long | Root of homo-grafted cucumber plants (with stock leaves removed) under -Pi for 24 h | 65.35 |
| SAMN04457421 | Cucumis sativus | Chinese Long | Root of homo-grafted cucumber plants under +Pi for 24 h | 53.89 |
| SAMN04457422 | Cucumis sativus | Chinese Long | Root of homo-grafted cucumber plants under -Pi for 24 h | 50.14 |
| SAMN04457427 | Cucumis sativus | Chinese Long | Root of non-grafted cucumber plants under +Pi for 24 h | 66.07 |
| SAMN04457428 | Cucumis sativus | Chinese Long | Root of non-grafted cucumber plants under -Pi for 24 h | 68.72 |
| SAMN04457397 | Cucumis sativus | Chinese long | Lamina under +Pi for 12 h | 147.26 |
| SAMN04457398 | Cucumis sativus | Chinese long | Lamina under -Pi for 12 h | 154.43 |
| SAMN04457399 | Cucumis sativus | Chinese long | Major vein under +Pi for 12 h | 261.38 |
| SAMN04457400 | Cucumis sativus | Chinese long | Major vein under -Pi for 12 h | 227.57 |
| SAMN04457401 | Cucumis sativus | Chinese long | Petiole vascular tissue under +Pi for 12 h | 306.25 |
| SAMN04457402 | Cucumis sativus | Chinese long | Petiole vascular tissue under -Pi for 12 h | 299.62 |
| SAMN04457403 | Cucumis sativus | Chinese long | Phloem sap under +Pi for 12 h | 122.95 |
| SAMN04457404 | Cucumis sativus | Chinese long | Phloem sap under -Pi for 12 h | 261.12 |
| SAMN04457405 | Cucumis sativus | Chinese long | Internode vascular tissue under +Pi for 12 h | 270.9 |
| SAMN04457406 | Cucumis sativus | Chinese long | Internode vascular tissue under -Pi for 12 h | 248.15 |
| SAMN04457407 | Cucumis sativus | Chinese long | Shoot apex under +Pi for 12 h | 76.58 |
| SAMN04457408 | Cucumis sativus | Chinese long | Shoot apex under -Pi for 12 h | 90.8 |
| SAMN04457409 | Cucumis sativus | Chinese long | Root under +Pi for 12 h | 146.04 |
| SAMN04457410 | Cucumis sativus | Chinese long | Root under -Pi for 12 h | 152.56 |
|
| PRJNA523714: Transcriptome profiling of C. campestris-connected cucumber plant clusters under nitrogen-depleted condition (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN10987397 | Cucumis sativus | Summer Strong | Leaves of plants under homogeneous N-replete condition (both cucumber plants supplied with 10 mM KNO3) after 0 hour | 99.22 |
| SAMN10987421 | Cucumis sativus | Summer Strong | Leaves of plants under homogeneous N-deprived environment (both cucumber plants supplied with 10 mM KCl) after 2 hours | 85.33 |
| SAMN10987445 | Cucumis sativus | Summer Strong | Leaves of plants under homogeneous N-deprived environment (both cucumber plants supplied with 10 mM KCl) after 8 hours | 99.26 |
| SAMN10987469 | Cucumis sativus | Summer Strong | Leaves of plants under homogeneous N-deprived environment (both cucumber plants supplied with 10 mM KCl) after 48 hours | 118.59 |
| SAMN10987406 | Cucumis sativus | Summer Strong | Leaves of plants under heterogeneous N condition (supplied with 10 mM KCl, but the other plant with 10 mM KNO3) for 2 hours | 80.97 |
| SAMN10987430 | Cucumis sativus | Summer Strong | Leaves of plants under heterogeneous N condition (supplied with 10 mM KCl, but the other plant with 10 mM KNO3) for 8 hours | 86.87 |
| SAMN10987454 | Cucumis sativus | Summer Strong | Leaves of plants under heterogeneous N condition (supplied with 10 mM KCl, but the other plant with 10 mM KNO3) for 48 hours | 106.24 |
| SAMN10987415 | Cucumis sativus | Summer Strong | Leaves of plants under heterogeneous N condition (supplied with 10 mM KNO3, but the other plant with 10 mM KCl) for 2 hours | 87.15 |
| SAMN10987439 | Cucumis sativus | Summer Strong | Leaves of plants under heterogeneous N condition (supplied with 10 mM KNO3, but the other plant with 10 mM KCl) for 8 hours | 85.54 |
| SAMN10987463 | Cucumis sativus | Summer Strong | Leaves of plants under heterogeneous N condition (supplied with 10 mM KNO3, but the other plant with 10 mM KCl) for 48 hours | 88.86 |
| SAMN10987400 | Cucumis sativus | Summer Strong | Roots of plants under homogeneous N-replete condition (both cucumber plants supplied with 10 mM KNO3) after 0 hour | 129.04 |
| SAMN10987424 | Cucumis sativus | Summer Strong | Roots of plants under homogeneous N-deprived environment (both cucumber plants supplied with 10 mM KCl) after 2 hours | 88.43 |
| SAMN10987448 | Cucumis sativus | Summer Strong | Roots of plants under homogeneous N-deprived environment (both cucumber plants supplied with 10 mM KCl) after 8 hours | 110 |
| SAMN10987472 | Cucumis sativus | Summer Strong | Roots of plants under homogeneous N-deprived environment (both cucumber plants supplied with 10 mM KCl) after 48 hours | 150.98 |
| SAMN10987409 | Cucumis sativus | Summer Strong | Roots of plants under heterogeneous N condition (supplied with 10 mM KCl, but the other plant with 10 mM KNO3) for 2 hours | 96.8 |
| SAMN10987433 | Cucumis sativus | Summer Strong | Roots of plants under heterogeneous N condition (supplied with 10 mM KCl, but the other plant with 10 mM KNO3) for 8 hours | 114.7 |
| SAMN10987457 | Cucumis sativus | Summer Strong | Roots of plants under heterogeneous N condition (supplied with 10 mM KCl, but the other plant with 10 mM KNO3) for 48 hours | 144.06 |
| SAMN10987418 | Cucumis sativus | Summer Strong | Roots of plants under heterogeneous N condition (supplied with 10 mM KNO3, but the other plant with 10 mM KCl) for 2 hours | 82.78 |
| SAMN10987442 | Cucumis sativus | Summer Strong | Roots of plants under heterogeneous N condition (supplied with 10 mM KNO3, but the other plant with 10 mM KCl) for 8 hours | 116.21 |
| SAMN10987466 | Cucumis sativus | Summer Strong | Roots of plants under heterogeneous N condition (supplied with 10 mM KNO3, but the other plant with 10 mM KCl) for 48 hours | 114.13 |
|
| PRJNA765376: Transcriptome responses to Sulfur (S) fumigation (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN21555952 | Cucumis sativus | Chinese Long | Non sulfur-fumigated ovaries at 0 days post pollination | 132.91 |
| SAMN21555953 | Cucumis sativus | Chinese Long | Sulfur-fumigated ovaries at 0 days post pollination | 140.23 |
| SAMN21555954 | Cucumis sativus | Chinese Long | Non sulfur-fumigated commercial fruits at 12 days post pollination | 440.54 |
| SAMN21555955 | Cucumis sativus | Chinese Long | Sulfur-fumigated commercial fruits at 12 days post pollination | 444.17 |
| SAMN21555950 | Cucumis sativus | Chinese Long | Non sulfur-fumigated mature leaves | 153.74 |
| SAMN21555951 | Cucumis sativus | Chinese Long | Sulfur-fumigated mature leaves | 178.09 |
| SAMN21555948 | Cucumis sativus | Chinese Long | Non sulfur-fumigated young leaves | 105.33 |
| SAMN21555949 | Cucumis sativus | Chinese Long | Sulfur-fumigated young leaves | 110.13 |
|
| PRJNA634519: Transcriptome response to high temperature stress (non-strand-specific) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN14998224 | Cucumis sativus | Chinese Long | Leaves of untreated plants | 29.59 |
| SAMN14998221 | Cucumis sativus | Chinese Long | Leaves of plants under heat treatment at 42℃ for 3 hours | 68.11 |
| SAMN14998218 | Cucumis sativus | Chinese Long | Leaves of plants under heat treatment at 42℃ for 6 hours | 66.73 |
|
| PRJNA748460: Transcriptome profiling of male flower development under heat stress (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN20335859 | Cucumis sativus | B80 | Anthers of male flowers with lengths of 0-3 mm under normal conditions | 69.76 |
| SAMN20335871 | Cucumis sativus | B80 | Anthers of male flowers with lengths of 0-3 mm under heat stress | 80.9 |
| SAMN20335862 | Cucumis sativus | B80 | Anthers of male flowers with lengths of 3-6 mm under normal conditions | 107.78 |
| SAMN20335874 | Cucumis sativus | B80 | Anthers of male flowers with lengths of 3-6 mm under heat stress | 141.63 |
| SAMN20335865 | Cucumis sativus | B80 | Anthers of male flowers with lengths of 6-9 mm under normal conditions | 158.06 |
| SAMN20335877 | Cucumis sativus | B80 | Anthers of male flowers with lengths of 6-9 mm under heat stress | 193.09 |
| SAMN20335868 | Cucumis sativus | B80 | Anthers of male flowers with lengths of >9 mm under normal conditions | 163.92 |
| SAMN20335880 | Cucumis sativus | B80 | Anthers of male flowers with lengths of >9 mm under heat stress | 192.63 |
|
| PRJNA380322: Transcriptome responses to temperature and photoperiod (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN06640661 | Cucumis sativus | Chinese Long | Shoot apices from seedlings under low temperature, short day | 60.74 |
| SAMN06640663 | Cucumis sativus | Chinese Long | Shoot apices from seedlings under high temperature, short day | 79.68 |
| SAMN06640662 | Cucumis sativus | Chinese Long | Shoot apices from seedlings under low temperature, long day | 61.23 |
| SAMN06640664 | Cucumis sativus | Chinese Long | Shoot apices from seedlings under high temperature, long day | 77.65 |
|
| PRJNA475903: Transcriptome responses to photoperiod treatment (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN09405568 | Cucumis sativus | SWCC8 | Leaves of plant at 0 day of photoperiod treatment | 126.25 |
| SAMN09405577 | Cucumis sativus | SWCC8 | Leaves (mixed) of plants at 7, 14 and 21 days of equal-day treatment | 77.41 |
| SAMN09405571 | Cucumis sativus | SWCC8 | Leaves (mixed) of plants at 7, 14 and 21 days of short-day treatment | 90.4 |
| SAMN09405580 | Cucumis sativus | SWCC8 | Leaves (mixed) of plants at 37 and 44 days of equal-day treatment | 86.22 |
| SAMN09405574 | Cucumis sativus | SWCC8 | Leaves (mixed) of plants at 37 and 44 days of short-day treatment | 75.38 |
| SAMN09405583 | Cucumis sativus | SWCC8 | Leaves (mixed) of plants at 52 and 59 days of equal-day treatment | 91.8 |
|
| PRJNA476021: Transcriptome responses to different ratios of blue and red light (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN09425165 | Cucumis sativus | Huaqing No. 5 | Shoot tips of plants under treatment with ratio of red to blue light of 2:1 for 5 days | 63.28 |
| SAMN09425169 | Cucumis sativus | Huaqing No. 5 | Shoot tips of plants under treatment with ratio of red to blue light of 2:1 for 10 days | 149.84 |
| SAMN09425173 | Cucumis sativus | Huaqing No. 5 | Shoot tips of plants under treatment with ratio of red to blue light of 2:1 for 15 days | 111.33 |
| SAMN09425167 | Cucumis sativus | Huaqing No. 5 | Shoot tips of plants under treatment with ratio of red to blue light of 4:1 for 5 days | 89.78 |
| SAMN09425171 | Cucumis sativus | Huaqing No. 5 | Shoot tips of plants under treatment with ratio of red to blue light of 4:1 for 10 days | 161.72 |
| SAMN09425175 | Cucumis sativus | Huaqing No. 5 | Shoot tips of plants under treatment with ratio of red to blue light of 4:1 for 15 days | 143.55 |
|
| PRJNA782229: Transcriptome profiling of fruit development under different photoperiod treatment (non-strand-specific) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SRX13518806 | Cucumis sativus | CC3 | Fruits at 10 days after pollination from photoperiod-insensitive plants subjected to neutral day treatment (12L/12D) | 389.21 |
| SRX13518810 | Cucumis sativus | CC3 | Fruits at 10 days after pollination from photoperiod-insensitive plants subjected to short day treatment (8L/16D) | 326.34 |
| SRX13518829 | Cucumis sativus | CC3 | Fruits at 20 days after pollination from photoperiod-insensitive plants subjected to neutral day treatment (12L/12D) | 382.99 |
| SRX13518813 | Cucumis sativus | CC3 | Fruits at 20 days after pollination from photoperiod-insensitive plants subjected to short day treatment (8L/16D) | 221.6 |
| SRX13518850 | Cucumis sativus | CC3 | Fruits at 30 days after pollination from photoperiod-insensitive plants subjected to neutral day treatment (12L/12D) | 491.47 |
| SRX13518816 | Cucumis sativus | CC3 | Fruits at 30 days after pollination from photoperiod-insensitive plants subjected to short day treatment (8L/16D) | 191.8 |
| SRX13518808 | Cucumis sativus | CC3 | Fruits at 40 days after pollination from photoperiod-insensitive plants subjected to neutral day treatment (12L/12D) | 679.66 |
| SRX13518820 | Cucumis sativus | CC3 | Fruits at 40 days after pollination from photoperiod-insensitive plants subjected to short day treatment (8L/16D) | 249.85 |
| SRX13518823 | Cucumis sativus | SWCC8 | Fruits at 10 days after pollination from photoperiod-sensitive plants subjected to neutral day treatment (12L/12D) | 274.63 |
| SRX13518836 | Cucumis sativus | SWCC8 | Fruits at 10 days after pollination from photoperiod-sensitive plants subjected to short day treatment (8L/16D) | 241.06 |
| SRX13518826 | Cucumis sativus | SWCC8 | Fruits at 20 days after pollination from photoperiod-sensitive plants subjected to neutral day treatment (12L/12D) | 339.08 |
| SRX13518839 | Cucumis sativus | SWCC8 | Fruits at 20 days after pollination from photoperiod-sensitive plants subjected to short day treatment (8L/16D) | 200.15 |
| SRX13518830 | Cucumis sativus | SWCC8 | Fruits at 30 days after pollination from photoperiod-sensitive plants subjected to neutral day treatment (12L/12D) | 385.88 |
| SRX13518843 | Cucumis sativus | SWCC8 | Fruits at 30 days after pollination from photoperiod-sensitive plants subjected to short day treatment (8L/16D) | 570.79 |
| SRX13518833 | Cucumis sativus | SWCC8 | Fruits at 40 days after pollination from photoperiod-sensitive plants subjected to neutral day treatment (12L/12D) | 436.37 |
| SRX13518846 | Cucumis sativus | SWCC8 | Fruits at 40 days after pollination from photoperiod-sensitive plants subjected to short day treatment (8L/16D) | 501.67 |
|
| PRJNA437579: Root transcriptome responses to salt stress (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN08668092 | Cucumis sativus | Jinchun No. 2 | Fresh root apexes (0-2 mm from the root tip) from seedlings without NaCl treatment | 45.46 |
| SAMN08668098 | Cucumis sativus | Jinchun No. 2 | Fresh root apexes (0-2 mm from the root tip) from seedlings after 24 hours treatment with 75 mM NaCl | 11.27 |
|
| PRJNA477930: Transcriptome responses to salt stress and silicon treatment (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN09487602 | Cucumis sativus | JinYou 1 | Leaves of untreated plants | 60.56 |
| SAMN09487597 | Cucumis sativus | JinYou 1 | Leaves of plants treated with silicon for three days | 68.84 |
| SAMN09487599 | Cucumis sativus | JinYou 1 | Leaves of plants treated with salt for three days | 63.68 |
| SAMN09487594 | Cucumis sativus | JinYou 1 | Leaves of plants treated with salt and silicon for three days | 58.72 |
|
| PRJNA511946: Transcriptome response to salt stress (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN10653474 | Cucumis sativus | JinYou 1 | Roots of non-stressed plants | 99.65 |
| SAMN10653467 | Cucumis sativus | JinYou 1 | Roots of plants under salt stress for 3 days | 82.4 |
|
| PRJNA524275: Transcriptome profiling of C. campestris-connected cucumber plant clusters under salt stress (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN11020240 | Cucumis sativus | Jinyou 35 | Leaves, both cucumber plants were mock treated for 12/24 h | 55.61 |
| SAMN11020243 | Cucumis sativus | Jinyou 35 | Leaves of plant treated with 50 mM NaCl for 12 h, while the other was mock treated | 58.69 |
| SAMN11020246 | Cucumis sativus | Jinyou 35 | Leaves of mock treated plant, while the other was treated with 50 mM NaCl for 12 h | 52.03 |
| SAMN11020249 | Cucumis sativus | Jinyou 35 | Leaves, both cucumber plants treated with 50 mM NaCl for 12 h | 49.63 |
| SAMN11020252 | Cucumis sativus | Jinyou 35 | Leaves of plant treated with 50 mM NaCl for 24 h, while the other was mock treated | 46.53 |
| SAMN11020255 | Cucumis sativus | Jinyou 35 | Leaves of mock treated plant, while the other was treated with 50 mM NaCl for 24 h | 48.18 |
| SAMN11020258 | Cucumis sativus | Jinyou 35 | Leaves, both cucumber plants treated with 50 mM NaCl for 24 h | 51.51 |
| SAMN11020261 | Cucumis sativus | Jinyou 35 | Roots, both cucumber plants were mock treated for 12/24 h | 76.38 |
| SAMN11020264 | Cucumis sativus | Jinyou 35 | Roots of plant treated with 50 mM NaCl for 12 h, while the other was mock treated | 73.14 |
| SAMN11020267 | Cucumis sativus | Jinyou 35 | Roots of mock treated plant, while the other was treated with 50 mM NaCl for 12 h | 79.01 |
| SAMN11020270 | Cucumis sativus | Jinyou 35 | Roots, both cucumber plants treated with 50 mM NaCl for 12 h | 74.21 |
| SAMN11020273 | Cucumis sativus | Jinyou 35 | Roots of plant treated with 50 mM NaCl for 24 h, while the other was mock treated | 69.55 |
| SAMN11020276 | Cucumis sativus | Jinyou 35 | Roots of mock treated plant, while the other was treated with 50 mM NaCl for 24 h | 69.48 |
| SAMN11020279 | Cucumis sativus | Jinyou 35 | Roots, both cucumber plants treated with 50 mM NaCl for 24 h | 67.37 |
|
| PRJNA563457: Transcriptome responses to H2S-regulated salt stress (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN12674486 | Cucumis sativus | Chunxiaqiuwang | Leaves of untreated plants | 107.22 |
| SAMN12674489 | Cucumis sativus | Chunxiaqiuwang | Leaves of plants treated with 200 mM NaCl for 7 days | 139.91 |
| SAMN12674492 | Cucumis sativus | Chunxiaqiuwang | Leaves of plants treated with 200 mM NaCl + 15.0 uM NaHS for 7 days | 155.42 |
|
| PRJNA678740: Transcriptome responses to long-term waterlogging (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN16811424 | Cucumis sativus | DH2 | Roots of tolerant plants untreated, cultivated in optimal conditions | 118.57 |
| SAMN16811567 | Cucumis sativus | DH2 | Roots of tolerant plants after 7 days of waterlogging and 14 days of recovery period | 65.38 |
| SAMN16811530 | Cucumis sativus | DH2 | Roots of non-primed tolerant plants, waterlogged for 7 days only once | 68.22 |
| SAMN16811572 | Cucumis sativus | DH2 | Roots of primed tolerant plants; waterlogged twice after 14 days of recovery period | 34.66 |
| SAMN16811671 | Cucumis sativus | DH4 | Roots of sensitive plants untreated, cultivated in optimal conditions | 116.49 |
| SAMN16811697 | Cucumis sativus | DH4 | Roots of sensitive plants after 7 days of waterlogging and 14 days of recovery period | 77.31 |
| SAMN16811676 | Cucumis sativus | DH4 | Roots of non-primed sensitive plants; waterlogged for 7 days only once | 40.42 |
| SAMN16811714 | Cucumis sativus | DH4 | Roots of primed sensitive plants; waterlogged twice after 14 days of recovery period | 28.55 |
|
| PRJNA799460: Transcriptome responses of hypocotyl to different waterlogging stress treatments (non-strand-specific) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN25172608 | Cucumis sativus | Zaoer-N | Hypocotyl of cucumber under control conditions for 48 hours | 251.13 |
| SAMN25172611 | Cucumis sativus | Zaoer-N | Hypocotyl of cucumber under waterlogging for 48 hours | 248.4 |
| SAMN25172614 | Cucumis sativus | Zaoer-N | Hypocotyl of cucumber treated with 10uM ACC waterlogging for 48 hours | 237.76 |
| SAMN25172617 | Cucumis sativus | Zaoer-N | Hypocotyl of cucumber treated with 10uM AOA waterlogging for 48 hours | 284.6 |
|
| PRJNA844418: Transcriptome responses of different tissues of hypocotyl to waterlogging (non-strand-specific) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN28817254 | Cucumis sativus | Zaoer-N | Hypocotyl epidermis of cucumber under control conditions for 48 hours | 232.01 |
| SAMN28817245 | Cucumis sativus | Zaoer-N | Hypocotyl epidermis of cucumber under waterlogging stress for 48 hours | 231.27 |
| SAMN28817257 | Cucumis sativus | Zaoer-N | Hypocotyl vascular bundles of cucumber under control conditions for 48 hours | 187 |
| SAMN28817248 | Cucumis sativus | Zaoer-N | Hypocotyl vascular bundle of cucumber under waterlogging stress for 48 hours | 243.26 |
| SAMN28817260 | Cucumis sativus | Zaoer-N | Hypocotyl basal tissue of cucumber under control conditions for 48 hours | 216.21 |
| SAMN28817251 | Cucumis sativus | Zaoer-N | Hypocotyl basic tissue of cucumber under waterlogging stress for 48 hours | 215.68 |
|
| PRJNA563186: Transcriptome responses to Alternaria cucumerina (alternaria leaf spot) (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN12670099 | Cucumis sativus | Beijing204 | Leaf of susceptible line at 2 days post mock treatment | 89.92 |
| SAMN12670096 | Cucumis sativus | Beijing204 | Leaf of susceptible line at 2 days post inoculation with Alternaria cucumerina | 62.09 |
| SAMN12670105 | Cucumis sativus | Beijing204 | Leaf of susceptible line at 6 days post mock treatment | 53.89 |
| SAMN12670102 | Cucumis sativus | Beijing204 | Leaf of susceptible line at 6 days post inoculation with Alternaria cucumerina | 47.43 |
| SAMN12670111 | Cucumis sativus | D1322 | Leaf of resistant line at 2 days post mock treatment | 84.11 |
| SAMN12670108 | Cucumis sativus | D1322 | Leaf of resistant line at 2 days post inoculation with Alternaria cucumerina | 83.35 |
| SAMN12670117 | Cucumis sativus | D1322 | Leaf of resistant line at 6 days post mock treatment | 51.8 |
| SAMN12670114 | Cucumis sativus | D1322 | Leaf of resistant line at 6 days post inoculation with Alternaria cucumerina | 61.38 |
|
| PRJNA388584: Transcriptome responses to downy mildew (non-strand-specific) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN07179433 | Cucumis sativus | PI 197088 | Leaf of resistant line at 0 h post inoculation with Pseudoperonospora cubensis | 207.4 |
| SAMN07179434 | Cucumis sativus | PI 197088 | Leaf of resistant line at 6 h post inoculation with Pseudoperonospora cubensis | 153 |
| SAMN07179435 | Cucumis sativus | PI 197088 | Leaf of resistant line at 24 h post inoculation with Pseudoperonospora cubensis | 207.59 |
|
| PRJNA544259: Transcriptome responses to downy mildew (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN11831000 | Cucumis sativus | HS279 | Leaves of plants at three days post mock treatment | 56.77 |
| SAMN11831003 | Cucumis sativus | HS279 | Leaves of plants at three days post inoculation with Pseudoperonospora cubensis (downy mildew) | 56.13 |
| SAMN11831006 | Cucumis sativus | NIL DM4.1.2 | Leaves of plants at three days post mock treatment | 63.5 |
| SAMN11831009 | Cucumis sativus | NIL DM4.1.2 | Leaves of plants at three days post inoculation with Pseudoperonospora cubensis (downy mildew) | 50.97 |
| SAMN11831012 | Cucumis sativus | NIL DM4.1.3 | Leaves of plants at three days post mock treatment | 66.71 |
| SAMN11831015 | Cucumis sativus | NIL DM4.1.3 | Leaves of plants at three days post inoculation with Pseudoperonospora cubensis (downy mildew) | 54.79 |
|
| PRJNA776553: Garlic volatile diallyl disulfide (DADS) induced cucumber resistance to downy mildew (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN22799462 | Cucumis sativus | CCMC | Leaf of plant uninoculated with P. cubensis and not treated with DADS | 132.11 |
| SAMN22799464 | Cucumis sativus | CCMC | Leaf of plant uninoculated with P. cubensis and treated with DADS | 85.84 |
| SAMN22799450 | Cucumis sativus | CCMC | Leaf of plant at 4 h post inoculation of P. cubensis and not treated with DADS | 157.54 |
| SAMN22799452 | Cucumis sativus | CCMC | Leaf of plant at 4 h post inoculation of P. cubensis and treated with DADS | 135.68 |
| SAMN22799454 | Cucumis sativus | CCMC | Leaf of plant at 24 h post inoculation of P. cubensis and not treated with DADS | 135.6 |
| SAMN22799456 | Cucumis sativus | CCMC | Leaf of plant at 24 h post inoculation of P. cubensis and treated with DADS | 92 |
| SAMN22799458 | Cucumis sativus | CCMC | Leaf of plant at 48 h post inoculation of P. cubensis and not treated with DADS | 86.89 |
| SAMN22799460 | Cucumis sativus | CCMC | Leaf of plant at 48 h post inoculation of P. cubensis and treated with DADS | 83.49 |
|
| PRJNA472169: Transcriptome responses to Fusarium oxysporum (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN09228081 | Cucumis sativus | Rijiecheng | Roots of plants at 0 h post inoculation with Foc | 115.96 |
| SAMN09228082 | Cucumis sativus | Rijiecheng | Roots of plants at 24 h post inoculation with Foc | 152.45 |
| SAMN09228083 | Cucumis sativus | Rijiecheng | Roots of plants at 48 h post inoculation with Foc | 164.08 |
| SAMN09228084 | Cucumis sativus | Rijiecheng | Roots of plants at 96 h post inoculation with Foc | 165.91 |
| SAMN09228085 | Cucumis sativus | Rijiecheng | Roots of plants at 192 h post inoculation with Foc | 124.46 |
|
| PRJNA484083: Transcriptome profiling of cucumber Fusarium wilt resistance induced by intercropping with celery (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN09759444 | Cucumis sativus | Fuyang | Roots of monocultured resistant plants inoculated with Fusarium oxysporum | 84.65 |
| SAMN09759446 | Cucumis sativus | Fuyang | Roots of resistant plants intercropped with celery and inoculated with Fusarium oxysporum | 112.79 |
| SAMN09759443 | Cucumis sativus | Tangyan | Roots of monocultured susceptible plants inoculated with Fusarium oxysporum | 104.62 |
| SAMN09759445 | Cucumis sativus | Tangyan | Roots of susceptible plants intercropped with celery and inoculated with Fusarium oxysporum | 101.02 |
|
| PRJNA750577: Transcriptome responses of CsRbohB-RNAi lines to Fusarium oxysporum (non-strand-specific) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN20474027 | Cucumis sativus | CCMC | Roots of control plants at 48 hours | 153.25 |
| SAMN20474030 | Cucumis sativus | CCMC | Roots of plants at 48 hours post inoculation with Foc | 99.6 |
| SAMN20474033 | Cucumis sativus | CsRbohB-RNAi | Roots of control RNAi plants at 48 hours | 127.18 |
| SAMN20474036 | Cucumis sativus | CsRbohB-RNAi | Roots of RNAi plants at 48 hours post inoculation with Foc | 113.82 |
|
| PRJNA419665: Transcriptome responses to nematode infection (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN08095139 | Cucumis sativus | CC3 | Roots of susceptible lines at 0 day post inoculation with Meloidogyne incognita | 94.49 |
| SAMN08095141 | Cucumis sativus | CC3 | Roots of susceptible lines at 1 day post inoculation with Meloidogyne incognita | 120.79 |
| SAMN08095143 | Cucumis sativus | CC3 | Roots of susceptible lines at 2 days post inoculation with Meloidogyne incognita | 127.73 |
| SAMN08095152 | Cucumis sativus | CC3 | Roots of susceptible lines at 3 days post inoculation with Meloidogyne incognita | 114.73 |
| SAMN08095163 | Cucumis sativus | IL10-1 | Roots of resistant lines at 0 day post inoculation with Meloidogyne incognita | 110.89 |
| SAMN08095169 | Cucumis sativus | IL10-1 | Roots of resistant lines at 1 day post inoculation with Meloidogyne incognita | 110.22 |
| SAMN08095179 | Cucumis sativus | IL10-1 | Roots of resistant lines at 2 days post inoculation with Meloidogyne incognita | 112.71 |
| SAMN08095185 | Cucumis sativus | IL10-1 | Roots of resistant lines at 3 days post inoculation with Meloidogyne incognita | 114.62 |
|
| PRJNA445328: Transcriptome responses to biocontrol agent Trichoderma longibrachiatum (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN08779020 | Cucumis sativus | Chinese Long | Leaves from non-inoculated (with Trichoderma) and non-challenged (with B. cinerea) plants | 82.47 |
| SAMN08779324 | Cucumis sativus | Chinese Long | Leaves from inoculated (with Trichoderma) and non-challenged (with B. cinerea) plants | 107.81 |
| SAMN08394921 | Cucumis sativus | Chinese Long | Leaves from inoculated (with Trichoderma) and challenged (with B. cinerea) plants | 71.14 |
|
| PRJNA285071: Transcriptome responses to Pseudoperonospora cubensis (downy mildew) (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN03737503 | Cucumis sativus | Vlaspik | Leaf of susceptible line under mock treatment | 61.48 |
| SAMN03734820 | Cucumis sativus | Vlaspik | Leaf of susceptible line at 1 day post inoculation with Pseudoperonospora cubensis | 50.8 |
| SAMN03737532 | Cucumis sativus | Vlaspik | Leaf of susceptible line at 2 days post inoculation with Pseudoperonospora cubensis | 50.86 |
| SAMN03737500 | Cucumis sativus | Vlaspik | Leaf of susceptible line at 3 days post inoculation with Pseudoperonospora cubensis | 59.73 |
| SAMN03737501 | Cucumis sativus | Vlaspik | Leaf of susceptible line at 4 days post inoculation with Pseudoperonospora cubensis | 40.5 |
| SAMN03737502 | Cucumis sativus | Vlaspik | Leaf of susceptible line at 6 days post inoculation with Pseudoperonospora cubensis | 43.96 |
| SAMN03737504 | Cucumis sativus | PI 197088 | Leaf of resistant line under mock treatment | 66.37 |
| SAMN03737508 | Cucumis sativus | PI 197088 | Leaf of resistant line at 1 day post inoculation with Pseudoperonospora cubensis | 57.11 |
| SAMN03737509 | Cucumis sativus | PI 197088 | Leaf of resistant line at 2 days post inoculation with Pseudoperonospora cubensis | 71.03 |
| SAMN03737510 | Cucumis sativus | PI 197088 | Leaf of resistant line at 3 days post inoculation with Pseudoperonospora cubensis | 76.31 |
| SAMN03737511 | Cucumis sativus | PI 197088 | Leaf of resistant line at 4 days post inoculation with Pseudoperonospora cubensis | 75.48 |
| SAMN03737512 | Cucumis sativus | PI 197088 | Leaf of resistant line at 6 days post inoculation with Pseudoperonospora cubensis | 80.53 |
|
| PRJNA292785: Transcriptome response by physcion and chrysophanol against cucumber powdery mildew (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN03988531 | Cucumis sativus | Changchunmici | Leaves of plants mock treated before inoculation with Sphaerotheca fuliginea for 3 days | 78.48 |
| SAMN03988533 | Cucumis sativus | Changchunmici | Leaves of plants treated with chrysophano before inoculation with Sphaerotheca fuliginea for 3 days | 80.95 |
| SAMN03988535 | Cucumis sativus | Changchunmici | Leaves of plants treated with physcion before inoculation with Sphaerotheca fuliginea for 3 days | 92.43 |
| SAMN03988538 | Cucumis sativus | Changchunmici | Leaves of plants treated with physcion and chrysophano before inoculation with Sphaerotheca fuliginea for 3 days | 100.96 |
|
| PRJNA321023: Transcriptome responses to powdery mildew disease (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN04962346 | Cucumis sativus | D8 | Leaves of susceptible plants at 0 h post inoculation with powdery mildew fungus | 84.72 |
| SAMN04962349 | Cucumis sativus | D8 | Leaves of susceptible plants at 48 h post inoculation with powdery mildew fungus | 58.24 |
| SAMN04962345 | Cucumis sativus | SSL508-28 | Leaves of resistant plants at 0 h post inoculation with powdery mildew fungus | 79.63 |
| SAMN04962354 | Cucumis sativus | SSL508-28 | Leaves of resistant plants at 48 h post inoculation with powdery mildew fungus | 63.73 |
|
| PRJNA603869: Transcriptome responses to powdery mildew disease (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN13943385 | Cucumis sativus | Q10 | Leaf of susceptible line at 24 h post mock treatment | 124.45 |
| SAMN13943392 | Cucumis sativus | Q10 | Leaf of susceptible line at 24 h post inoculation with powdery mildew fungus | 115.9 |
| SAMN13943388 | Cucumis sativus | Q10 | Leaf of susceptible line at 48 h post mock treatment | 142.06 |
| SAMN13943395 | Cucumis sativus | Q10 | Leaf of susceptible line at 48 h post inoculation with powdery mildew fungus | 126.86 |
| SAMN13943398 | Cucumis sativus | XY09-118 | Leaf of resistant line at 24 h post mock treatment | 119.52 |
| SAMN13943405 | Cucumis sativus | XY09-118 | Leaf of resistant line at 24 h post inoculation with powdery mildew fungus | 140.44 |
| SAMN13943402 | Cucumis sativus | XY09-118 | Leaf of resistant line at 48 h post mock treatment | 132.68 |
| SAMN13943408 | Cucumis sativus | XY09-118 | Leaf of resistant line at 48 h post inoculation with powdery mildew fungus | 150.67 |
|
| PRJNA816625: Transcriptome response to Podosphaera xanthii (powdery mildew) (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN26686559 | Cucumis sativus | B21-a-2-2-2 | Cotyledon of susceptible line at 0 h post inoculation with Podosphaera xanthii | 80.44 |
| SAMN26686562 | Cucumis sativus | B21-a-2-1-2 | Cotyledon of resistant line at 0 h post inoculation with Podosphaera xanthii | 71.66 |
| SAMN26686565 | Cucumis sativus | B21-a-2-2-2 | Cotyledon of susceptible line at 6 h post inoculation with Podosphaera xanthii | 109.99 |
| SAMN26686568 | Cucumis sativus | B21-a-2-1-2 | Cotyledon of resistant line at 6 h post inoculation with Podosphaera xanthii | 135.75 |
|
| PRJNA704621: Transcriptome responses to Pseudomonas syringae pv. lachrymans (Psl) (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN18049944 | Cucumis sativus | B10 | Leaf of susceptible line without Psl 814/98 inoculation | 141.58 |
| SAMN18050103 | Cucumis sativus | B10 | Leaf of susceptible line at 1 day post inoculation with Psl 814/98 | 123.49 |
| SAMN18050492 | Cucumis sativus | B10 | Leaf of susceptible line at 3 days post inoculation with Psl 814/98 | 112.84 |
| SAMN18050892 | Cucumis sativus | Gy14 | Leaf of resistant line without Psl 814/98 inoculation | 148.33 |
| SAMN18051058 | Cucumis sativus | Gy14 | Leaf of resistant line at 1 day post inoculation with Psl 814/98 | 126.86 |
| SAMN18051198 | Cucumis sativus | Gy14 | Leaf of resistant line at 3 days post inoculation with Psl 814/98 | 127.7 |
|
| PRJNA345040: Transcriptomes of peels from fruit differing in age-related resistance to Phytophthora capsici (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN05856085 | Cucumis sativus | Vlaspik | Fruit peel collected at 8 days post pollination (susceptible age) | 139.93 |
| SAMN05856088 | Cucumis sativus | Vlaspik | Fruit peel collected at 16 days post pollination (resistant age) | 258.84 |
| SAMN05856091 | Cucumis sativus | Gy14 | Fruit peel collected at 8 days post pollination (susceptible age) | 102.12 |
| SAMN05856094 | Cucumis sativus | Gy14 | Fruit peel collected at 16 days post pollination (susceptible age) | 201.32 |
|
| PRJNA575868: Transcriptomes of fruit peel in response to Phytophthora capsici (fruit rot) (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN12912830 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then under mock treatment for 0 h (Experiment 1) | 50.25 |
| SAMN12912831 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then inoculated with Phytophthora capsici for 4 h (Experiment 1) | 47.55 |
| SAMN12912832 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then inoculated with Phytophthora capsici for 24 h (Experiment 1) | 37 |
| SAMN12912833 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then inoculated with Phytophthora capsici for 48 h (Experiment 1) | 37.82 |
| SAMN12912838 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then under mock treatment for 0 h (Experiment 2) | 8.43 |
| SAMN12912839 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then under mock treatment for 2 h (Experiment 2) | 9.7 |
| SAMN12912852 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then inoculated with Phytophthora capsici for 2 h (Experiment 2) | 10.34 |
| SAMN12912840 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then under mock treatment for 4 h (Experiment 2) | 5.72 |
| SAMN12912853 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then inoculated with Phytophthora capsici for 4 h (Experiment 2) | 10.2 |
| SAMN12912841 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then under mock treatment for 8 h (Experiment 2) | 8.42 |
| SAMN12912854 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then inoculated with Phytophthora capsici for 8 h (Experiment 2) | 5.52 |
| SAMN12912842 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then under mock treatment for 12 h (Experiment 2) | 6.65 |
| SAMN12912855 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then inoculated with Phytophthora capsici for 12 h (Experiment 2) | 5.47 |
| SAMN12912843 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then under mock treatment for 18 h (Experiment 2) | 6.38 |
| SAMN12912856 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then inoculated with Phytophthora capsici for 18 h (Experiment 2) | 5.91 |
| SAMN12912844 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then under mock treatment for 24 h (Experiment 2) | 5.31 |
| SAMN12912857 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then inoculated with Phytophthora capsici for 24 h (Experiment 2) | 4.02 |
| SAMN12912834 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then under mock treatment for 0 h (Experiment 1) | 79.67 |
| SAMN12912835 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then inoculated with Phytophthora capsici for 4 h (Experiment 1) | 60.72 |
| SAMN12912836 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then inoculated with Phytophthora capsici for 24 h (Experiment 1) | 71.6 |
| SAMN12912837 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then inoculated with Phytophthora capsici for 48 h (Experiment 1) | 64.56 |
| SAMN12912845 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then under mock treatment for 0 h (Experiment 2) | 11.01 |
| SAMN12912846 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then under mock treatment for 2 h (Experiment 2) | 6.29 |
| SAMN12912858 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then inoculated with Phytophthora capsici for 2 h (Experiment 2) | 9.62 |
| SAMN12912847 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then under mock treatment for 4 h (Experiment 2) | 10.16 |
| SAMN12912859 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then inoculated with Phytophthora capsici for 4 h (Experiment 2) | 7.88 |
| SAMN12912848 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then under mock treatment for 8 h (Experiment 2) | 8.47 |
| SAMN12912860 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then inoculated with Phytophthora capsici for 8 h (Experiment 2) | 8.61 |
| SAMN12912849 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then under mock treatment for 12 h (Experiment 2) | 10.97 |
| SAMN12912861 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then inoculated with Phytophthora capsici for 12 h (Experiment 2) | 8.79 |
| SAMN12912850 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then under mock treatment for 18 h (Experiment 2) | 8.57 |
| SAMN12912862 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then inoculated with Phytophthora capsici for 18 h (Experiment 2) | 7.65 |
| SAMN12912851 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then under mock treatment for 24 h (Experiment 2) | 10.19 |
| SAMN12912863 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then inoculated with Phytophthora capsici for 24 h (Experiment 2) | 8.36 |
|
| PRJNA646644: Transcriptome responses to cucumber green mottle mosaic virus (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN15548822 | Cucumis sativus | 229 | Leaf of healthy control, 3 days | 64.88 |
| SAMN15548823 | Cucumis sativus | 229 | Leaf of plant at 3 days post inoculation with cucumber green mottle mosaic virus | 25.36 |
| SAMN15548824 | Cucumis sativus | 229 | Leaf of healthy control, 20 days | 41.28 |
| SAMN15548825 | Cucumis sativus | 229 | Leaf of plant at 20 days post inoculation with cucumber green mottle mosaic virus | 52.01 |
|
| PRJNA701150: Transcriptome responses to cucumber green mottle mosaic virus (CGMMV) (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN17849263 | Cucumis sativus | KS | Leaves of healthy plants | 18.94 |
| SAMN17849283 | Cucumis sativus | KS | Bright yellow islands from CGMMV-infected leaves exhibiting early post-recovery stage symptoms | 30.05 |
| SAMN17849285 | Cucumis sativus | KS | Dark green islands from CGMMV-infected leaves exhibiting early post-recovery stage symptoms | 21.27 |
| SAMN17849284 | Cucumis sativus | KS | Bright yellow islands from CGMMV-infected leaves exhibiting late post-recovery stage symptoms | 29.12 |
| SAMN17849286 | Cucumis sativus | KS | Dark green islands from CGMMV-infected leaves exhibiting late post-recovery stage symptoms | 19.72 |
|
| PRJNA837466: Transcriptome response to Prunus necrotic ringspot virus (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN28204068 | Cucumis sativus | NA | Leaf of cucumber seedlings at 12 days of mock treatment | 50.93 |
| SAMN28204071 | Cucumis sativus | NA | Leaf of cucumber seedlings at 12 days post-inoculation with Prunus necrotic ringspot virus | 60.94 |
|
| PRJNA307098: Transcriptome profiling of corolla opening (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN04372266 | Cucumis sativus | 6457 | Corolla opening in the normal ovary at 1 day after labeling | 92.16 |
| SAMN04372269 | Cucumis sativus | 6457 | Corolla opening in the normal ovary at 3 days after labeling | 151.42 |
| SAMN04372272 | Cucumis sativus | 6457 | Corolla opening in the normal ovary at 4 days after labeling | 148.91 |
| SAMN04372275 | Cucumis sativus | 6457 | Corolla opening in the normal ovary at 5 days after labeling | 108.66 |
| SAMN04372278 | Cucumis sativus | 6457 | Corolla opening in the super ovary at 1 day after labeling | 75.31 |
| SAMN04372281 | Cucumis sativus | 6457 | Corolla opening in the super ovary at 3 days after labeling | 122.42 |
| SAMN04372284 | Cucumis sativus | 6457 | Corolla opening in the super ovary at 4 days after labeling | 184.09 |
| SAMN04372287 | Cucumis sativus | 6457 | Corolla opening in the super ovary at 5 days after labeling | 195.74 |
| SAMN04372291 | Cucumis sativus | 6457 | Corolla opening in the super ovary at 7 days after labeling | 194.66 |
| SAMN04372294 | Cucumis sativus | 6457 | Corolla opening in the super ovary at 8 days after labeling | 132.76 |
| SAMN04372289 | Cucumis sativus | 6457 | Corolla opening in the super ovary at 9 days after labeling | 113.19 |
|
| PRJNA783663: Time-course transcriptome of multicellular trichomes (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN23441956 | Cucumis sativus | 3542 | Cotyledon at 18 hours after seed soaking | 58.59 |
| SAMN23441959 | Cucumis sativus | 3542 | Cotyledon at 36 hours after seed soaking | 140.69 |
| SAMN23441962 | Cucumis sativus | 3542 | Cotyledon at 60 hours after seed soaking | 155.74 |
| SAMN23441965 | Cucumis sativus | 3542 | Cotyledon at 72 hours after seed soaking | 90.31 |
| SAMN23441968 | Cucumis sativus | 3542 | Cotyledon at 96 hours after seed soaking | 90.45 |
|
| PRJNA258122: Transcriptomes of early fruits (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN02988317 | Cucumis sativus | 408 | Early fruits of about 2-4cm | 58.25 |
| SAMN02988319 | Cucumis sativus | 409 | Early fruits of about 2-4cm | 37.55 |
|
| PRJNA381300: Transcriptome profiling of fruits and leaves (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN06673860 | Cucumis sativus | Chinese Long | Leaf | 40.51 |
| SAMN06673861 | Cucumis sativus | Chinese Long | Fruit flesh at 10 days post anthesis | 331.86 |
| SAMN06673862 | Cucumis sativus | Chinese Long | Fruit flesh at 20 days post anthesis | 728.05 |
| SAMN06673863 | Cucumis sativus | Chinese Long | Fruit flesh at 30 days post anthesis | 1769.6 |
| SAMN06673864 | Cucumis sativus | Chinese Long | Fruit flesh at 40 days post anthesis | 526.68 |
| SAMN06673866 | Cucumis sativus | Chinese Long | Fruit flesh at 40 days post anthesis, treated with ethylene for 1.5 h | 764.62 |
|
| PRJNA448682: Transcriptome profiling of fruit development (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN08862945 | Cucumis sativus | YanBai | Flesh at 3 days after self-pollination | 178.21 |
| SAMN08862951 | Cucumis sativus | YanBai | Flesh at 6 days after self-pollination | 297.42 |
| SAMN08862949 | Cucumis sativus | YanBai | Flesh at 9 days after self-pollination | 358.82 |
| SAMN08862946 | Cucumis sativus | YanBai | Peel at 3 days after self-pollination | 78.84 |
| SAMN08862944 | Cucumis sativus | YanBai | Peel at 6 days after self-pollination | 87.35 |
| SAMN08862950 | Cucumis sativus | YanBai | Peel at 9 days after self-pollination | 115.6 |
|
| PRJNA517913: Transcriptomes of fruits in lines with different carpel numbers (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN10847189 | Cucumis sativus | 32X | Fruits at anthesis (carpel number=3) | 101.81 |
| SAMN10847186 | Cucumis sativus | GFC | Fruits at anthesis (carpel number=5) | 104.76 |
|
| PRJNA558838: Transcriptome profiling of fruit development (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN12500541 | Cucumis sativus | Gy14 | Fruit peel at 8 days post pollination | 55.8 |
| SAMN12500542 | Cucumis sativus | Gy14 | Fruit peel at 16 days post pollination | 73.99 |
| SAMN12500543 | Cucumis sativus | Poinsett 76 | Fruit peel at 8 days post pollination | 50.25 |
| SAMN12500544 | Cucumis sativus | Poinsett 76 | Fruit peel at 16 days post pollination | 79.67 |
|
| PRJNA564950: Transcriptome profiling of mesocarp development (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN12727350 | Cucumis sativus | D8 | Mesocarps at 0 day after pollination | 129.51 |
| SAMN12727353 | Cucumis sativus | D8 | Mesocarps at 3 days after pollination | 146.14 |
| SAMN12727356 | Cucumis sativus | D8 | Mesocarps at 6 days after pollination | 241.72 |
| SAMN12727359 | Cucumis sativus | D8 | Mesocarps at 9 days after pollination | 339.29 |
|
| PRJNA647135: Transcriptomes of fruit skin with different colors (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN15577520 | Cucumis sativus | Bai | Fruit skin at 15 days after flowering | 73.68 |
| SAMN15577524 | Cucumis sativus | Lv | Fruit skin at 15 days after flowering | 77.65 |
|
| PRJNA678478: Transcriptome profiling of fruit peels with different colors (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN16803070 | Cucumis sativus | L14 | Yellow mature peel | 76.47 |
| SAMN16803071 | Cucumis sativus | L14 | Green-white young peel | 75.1 |
| SAMN16803072 | Cucumis sativus | L19 | White mature peel | 63.29 |
| SAMN16803073 | Cucumis sativus | L19 | Green-white young peel | 69.89 |
|
| PRJNA707246: Transcriptome profiling of yellow and white fruit flesh (non-strand-specific) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN18192479 | Cucumis sativus | NA | Yellow fruit flesh at 10 days after pollination | 675.04 |
| SAMN18192488 | Cucumis sativus | NA | White fruit flesh at 10 days after pollination | 632 |
| SAMN18192482 | Cucumis sativus | NA | Yellow fruit flesh at 20 days after pollination | 849.48 |
| SAMN18192491 | Cucumis sativus | NA | White fruit flesh at 20 days after pollination | 941.53 |
| SAMN18192485 | Cucumis sativus | NA | Yellow fruit flesh at 30 days after pollination | 278.19 |
| SAMN18192494 | Cucumis sativus | NA | White fruit flesh at 30 days after pollination | 446.29 |
|
| PRJNA817515: Transcriptomes of fruit flesh and peel (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN26791361 | Cucumis sativus | Chuichung | Peel of ripe fruit | 49.87 |
| SAMN26791363 | Cucumis sativus | White Dadagi | Peel of ripe fruit | 40.86 |
| SAMN26791365 | Cucumis sativus | Mini | Peel of ripe fruit | 46.28 |
| SAMN26791362 | Cucumis sativus | Chuichung | Flesh of ripe fruit | 145.42 |
| SAMN26791364 | Cucumis sativus | White Dadagi | Flesh of ripe fruit | 97.76 |
| SAMN26791366 | Cucumis sativus | Mini | Flesh of ripe fruit | 74.16 |
|
| PRJNA660492: Transcriptome profiling of fruit spine development (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN15951074 | Cucumis sativus | NC072 | Fruit spines at stage II (0.2 cm ovary) | 141.92 |
| SAMN15951077 | Cucumis sativus | NC072 | Fruit spines at stage III (0.35 cm ovary) | 154.84 |
| SAMN15951080 | Cucumis sativus | NC072 | Fruit spines at stage IV (0.65 cm ovary) | 140.01 |
| SAMN15951083 | Cucumis sativus | NC073 | Fruit spines at stage II (0.2 cm ovary) | 155.42 |
| SAMN15951086 | Cucumis sativus | NC073 | Fruit spines at stage III (0.35 cm ovary) | 155.97 |
| SAMN15951089 | Cucumis sativus | NC073 | Fruit spines at stage IV (0.65 cm ovary) | 154.78 |
|
| PRJNA852610: Transcriptome profiling of fruit spine (non-strand-specific) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN29336066 | Cucumis sativus | WZ1 | Fruit spine at 8 days before anthesis | 124.85 |
| SAMN29336069 | Cucumis sativus | WZ1 | Fruit spine at anthesis | 89.54 |
| SAMN29336072 | Cucumis sativus | WZ1 | Fruit spine at 8 days after anthesis | 125.21 |
|
| PRJNA552914: Trancriptome profiling of homo- and hetero-grafted plants (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN12221401 | Cucumis sativus | Xintaimici | Leaf of homografting plants (cucumber grafted on cucumber) | 107.02 |
| SAMN12221407 | Cucumis sativus | Xintaimici | Leaf of heterografting plants (cucumber grafted on C. moschata) | 136.66 |
| SAMN12221404 | Cucumis sativus | Xintaimici | Root of homografting plants (cucumber grafted on cucumber) | 110.17 |
| SAMN12221416 | Cucumis sativus | Xintaimici | Root of heterografting plants (C. moschata grafted on cucumber) | 119 |
|
| PRJNA317163: Grafting changed silicon metabolism and expression of bloom-forming related genes (non-strand-specific) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN04600319 | Cucumis sativus | Shannong No.5 | Pericarp of non-grafted cucumber (with sparse bloom) | 180.67 |
| SAMN04600321 | Cucumis sativus | Shannong No.5 | Pericarp of non-grafted cucumber treated with 1.7mM silicon for 2 hours (with dense bloom) | 147.16 |
| SAMN04600323 | Cucumis sativus | Shannong No.5 | Pericarp of self-grafted cucumber (with sparse bloom) | 159.13 |
| SAMN04600325 | Cucumis sativus | Shannong No.5 | Pericarp of self-grafted cucumber treated with 1.7mM silicon for 2 hours (with dense bloom) | 180.46 |
| SAMN04600327 | Cucumis sativus | Shannong No.5 | Pericarp of cucumber grafted onto pumpkin '3212' (with sparse bloom) | 117.19 |
| SAMN04600330 | Cucumis sativus | Shannong No.5 | Pericarp of cucumber grafted onto pumpkin '3212' and treated with 1.7mM silicon for 2 hours (with least bloom) | 128.8 |
| SAMN04600332 | Cucumis sativus | Shannong No.5 | Pericarp of cucumber grafted onto pumpkin '3225' (with sparse bloom) | 158.15 |
| SAMN04600334 | Cucumis sativus | Shannong No.5 | Pericarp of cucumber grafted onto pumpkin '3225' and treated with 1.7mM silicon for 2 hours (with dense bloom) | 179.26 |
|
| PRJNA612596: Transcriptomes of virescent leaf and green leaf (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN14377560 | Cucumis sativus | 104Y | The first true leaf of virescent leaf mutant | 95.91 |
| SAMN14377563 | Cucumis sativus | EC1 | The first true leaf of wild type plant (green leaf) | 93.96 |
|
| PRJNA312872: Transcriptome atlas of cucumber (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN04530052 | Cucumis sativus | 9930 | Flesh of unfertilized ovary | 665.15 |
| SAMN04530054 | Cucumis sativus | 9930 | Flesh of 1-week-old fruit | 645.44 |
| SAMN04530056 | Cucumis sativus | 9930 | Flesh of 2-week-old fruit | 1552.76 |
| SAMN04530058 | Cucumis sativus | 9930 | Flesh of 3-week-old fruit | 1501.29 |
| SAMN04530051 | Cucumis sativus | 9930 | Peel of unfertilized ovary | 130.47 |
| SAMN04530053 | Cucumis sativus | 9930 | Peel of 1-week-old fruit | 126.96 |
| SAMN04530055 | Cucumis sativus | 9930 | Peel of 2-week-old fruit | 319.51 |
| SAMN04530057 | Cucumis sativus | 9930 | Peel of 3-week-old fruit | 258.53 |
| SAMN04530050 | Cucumis sativus | 9930 | Unfertilized ovary (not grew) | 195.78 |
| SAMN04530047 | Cucumis sativus | 9930 | Female flower | 177.08 |
| SAMN04530049 | Cucumis sativus | 9930 | Male flower | 112.8 |
| SAMN04530048 | Cucumis sativus | 9930 | Male flower bud | 213.93 |
| SAMN04530038 | Cucumis sativus | 9930 | Cotyledon of 4-week-old seedlings | 194.82 |
| SAMN04530037 | Cucumis sativus | 9930 | Hypocotyl of 4-week-old seedlings | 289.94 |
| SAMN04530036 | Cucumis sativus | 9930 | Root of 4-week-old seedlings | 190.86 |
| SAMN04530039 | Cucumis sativus | 9930 | True Leaf of 4-week-old seedlings | 125.94 |
| SAMN04530042 | Cucumis sativus | 9930 | Young Leaf | 124.76 |
| SAMN04530044 | Cucumis sativus | 9930 | Old leaf | 329.93 |
| SAMN04530043 | Cucumis sativus | 9930 | Petiole of young leaf | 317 |
| SAMN04530045 | Cucumis sativus | 9930 | Petiole of old leaf | 677.27 |
| SAMN04530040 | Cucumis sativus | 9930 | Root | 316.09 |
| SAMN04530041 | Cucumis sativus | 9930 | Stem | 270.64 |
| SAMN04530046 | Cucumis sativus | 9930 | Tendril | 340.07 |
|
| PRJNA752681: Transcriptomes of a dark green genotype (non-strand-specific; Publication) | Download | Show/hide expression |
|
| PRJNA80169: Transcriptomes of different cucumber tissues (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN00738224 | Cucumis sativus | Chinese Long | Ovary | 123.52 |
| SAMN00738223 | Cucumis sativus | Chinese Long | Expanded ovary under fertilization (7 days after flowering) | 122.83 |
| SAMN00738222 | Cucumis sativus | Chinese Long | Expanded ovary not fertilized (7 days after flowering) | 169.32 |
| SAMN00738220 | Cucumis sativus | Chinese Long | Female flower | 185.1 |
| SAMN00738221 | Cucumis sativus | Chinese Long | Male flower | 199.03 |
| SAMN00738225 | Cucumis sativus | Chinese Long | Root | 228.58 |
| SAMN00738219 | Cucumis sativus | Chinese Long | Stem | 149.45 |
| SAMN00738218 | Cucumis sativus | Chinese Long | Leaf | 77.09 |
| SAMN00738226 | Cucumis sativus | Chinese Long | Tendril | 111.24 |
| SAMN00738227 | Cucumis sativus | Chinese Long | Base part of tendril | 123.49 |
|
| PRJNA773731: Transcriptomes of apical pistils in wild-type and mutants (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN22504570 | Cucumis sativus | Xintaimici | Apical pistils containing stigmas and styles at anthesis | 123.9 |
| SAMN22504567 | Cucumis sativus | Csalc-/- | Apical pistils containing stigmas and styles at anthesis | 148.53 |
| SAMN22504573 | Cucumis sativus | Csspt-/- | Apical pistils containing stigmas and styles at anthesis | 119.2 |
| SAMN22504565 | Cucumis sativus | CssptCsalc-/- | Apical pistils containing stigmas and styles at anthesis | 98.06 |
|
| PRJNA510369: Transcriptome of lateral bud of CsBRC1 RNAi line (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN10602942 | Cucumis sativus | CsBRC1-RNAi | Lateral bud | 60.43 |
| SAMN10602932 | Cucumis sativus | R1461 | Lateral bud | 64.41 |
|
| PRJNA700062: Transcriptomes of Cshec2 CRISPR mutant (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN17821603 | Cucumis sativus | Cshec2 CRISPR mutant | Female bud at 7 days before anthesis | 87.69 |
| SAMN17821606 | Cucumis sativus | XTMC | Female bud at 7 days before anthesis | 90.38 |
|
| PRJNA685868: Transcriptomes of albino mutant (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN17098952 | Cucumis sativus | albino mutant | Cotyledon of 7-day-old seedling | 28.03 |
| SAMN17098955 | Cucumis sativus | g32 | Cotyledon of 7-day-old seedling | 105.09 |
|
| PRJNA402017: Transcriptome of young fruits of CsFUL1 overexpression line (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN07614792 | Cucumis sativus | R1407 | Young fruits at 4 days before anthesis (long fruit) | 62.24 |
| SAMN07614794 | Cucumis sativus | CsFUL1 overexpression line | Young fruits at 4 days before anthesis (short fruit) | 30.58 |
|
| PRJNA540430: Transcriptome of fruit of sf2 mutant (short-fruit) (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN11536744 | Cucumis sativus | 406 | Fruit at 0 days after anthesis | 88.32 |
| SAMN11536742 | Cucumis sativus | sf2 mutant | Fruit at 0 days after anthesis | 80.59 |
|
| PRJNA541993: Transcriptome of fruit peel of an irregularly striped rind mutant (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN11606053 | Cucumis sativus | CCMC | Fruit peel at 10 days after post pollination | 130.18 |
| SAMN11606056 | Cucumis sativus | ist mutant | Fruit peel at 10 days after post pollination | 149.66 |
|
| PRJNA685586: Leaf transcriptomes of multiple trichome (mt) mutant (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN17088088 | Cucumis sativus | CCMC | The first true leaf | 36.38 |
| SAMN17088091 | Cucumis sativus | mt mutant | The first true leaf | 31.93 |
|
| PRJNA342056: Transcriptomes of CsIND-RNAi lines (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN05735036 | Cucumis sativus | CsIND-RNAi | Leaf vein | 87.22 |
| SAMN05735041 | Cucumis sativus | R1461 | Leaf vein | 37.33 |
| SAMN05735039 | Cucumis sativus | CsIND-RNAi | Young fruit at 4 d before anthesis | 73.6 |
| SAMN05735037 | Cucumis sativus | R1461 | Young fruit at 4 d before anthesis | 87.27 |
|
| PRJNA672817: Transcriptome profiling of micro-plant (mp) mutant (strand-specific) | Download | Show/hide expression |
|
| PRJNA428976: Transcriptomes of young ovaries in the round leaf mutant (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN08326585 | Cucumis sativus | Round leaf (rl) mutant | Young ovaries at 4 d before anthesis | 109.28 |
| SAMN08326588 | Cucumis sativus | 649 | Young ovaries at 4 d before anthesis | 96.83 |
|
| PRJNA382994: Transcriptome profiling of mosaic (MSC) mitochondrial mutants (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN06768506 | Cucumis sativus | B | Shoots (cut off 0.5 cm below the cotyledons) | 63.61 |
| SAMN06768508 | Cucumis sativus | MSC3 | Shoots (cut off 0.5 cm below the cotyledons) | 69.04 |
| SAMN06768510 | Cucumis sativus | MSC12 | Shoots (cut off 0.5 cm below the cotyledons) | 78.65 |
| SAMN06768512 | Cucumis sativus | MSC16 | Shoots (cut off 0.5 cm below the cotyledons) | 71.91 |
|
| PRJNA765045: Transcriptome profiling of reciprocal hybrids (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN21542188 | Cucumis sativus | ST8-4x9930-3 | Apical meristem and young leaf from hybrids with significant reciprocal effects | 49.08 |
| SAMN21542191 | Cucumis sativus | 9930-3xST8-4 | Apical meristem and young leaf from hybrids with significant reciprocal effects | 49.47 |
| SAMN21542194 | Cucumis sativus | ST8-2xGY14-15 | Apical meristem and young leaf from hybrids with significant reciprocal effects | 48.59 |
| SAMN21542197 | Cucumis sativus | GY14-15xST8-2 | Apical meristem and young leaf from hybrids with significant reciprocal effects | 51.82 |
| SAMN21542200 | Cucumis sativus | ST8-4xTMG1-5 | Apical meristem and young leaf from hybrids with no significant reciprocal effects | 45.88 |
| SAMN21542203 | Cucumis sativus | TMG1-5xST8-4 | Apical meristem and young leaf from hybrids with no significant reciprocal effects | 45.89 |
| SAMN21542206 | Cucumis sativus | ST8-4xGY14-15 | Apical meristem and young leaf from hybrids with no significant reciprocal effects | 50.21 |
| SAMN21542209 | Cucumis sativus | GY14-15xST8-4 | Apical meristem and young leaf from hybrids with no significant reciprocal effects | 50.56 |
|
| PRJNA428292: Transcriptomes of cucumber ovaries inhibited by dominant fruits (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN08286996 | Cucumis sativus var. sativus | Elem female | Ovary at 1 day after pollination in presence of older fruits (f+1) | 67.97 |
| SAMN08286998 | Cucumis sativus var. sativus | Elem female | Ovary at 1 DPA, no pollination (S+1) | 71.74 |
| SAMN08287001 | Cucumis sativus var. sativus | Elem female | Ovary at 1 day after pollination (F+1) | 72.3 |
| SAMN08287004 | Cucumis sativus var. sativus | Elem female | Ovary at anthesis | 61.31 |
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| PRJNA431715: Transcriptomes of ovaries and pericarps from numerous-spine and few-spine inbred lines (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN08398980 | Cucumis sativus | NCG122 | Pericarp on the day of flowering of numerous fruit spine line | 99.45 |
| SAMN08398977 | Cucumis sativus | NCG122 | Ovary at 6 days before flowering of numerous fruit spine line | 74.73 |
| SAMN08398986 | Cucumis sativus | NCG121 | Pericarp on the day of flowering of few fruit spine line | 88.61 |
| SAMN08398983 | Cucumis sativus | NCG121 | Ovary at 6 days before flowering of few fruit spine line | 72.51 |
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| PRJNA613672: Transcriptome profiling of ovary culture-induced embryogenesis (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN14414632 | Cucumis sativus | SG033 | Fresh unpollinated ovaries cultured for 0 d | 63.85 |
| SAMN14414629 | Cucumis sativus | SG033 | Ovules cultured for 2 d | 60.48 |
| SAMN14414626 | Cucumis sativus | SG033 | Embryos cultured for 10 d | 67.43 |
| SAMN14414623 | Cucumis sativus | SG033 | Embryos cultured for 20 d | 66.79 |
| SAMN14414621 | Cucumis sativus | SG033 | Embryos cultured for 30 d | 108.16 |
| SAMN14414646 | Cucumis sativus | SG033 | Shoots after 60 d of culture | 94.8 |
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| PRJDB6130: Hydrotropism-related gene expression in roots exposed to different gravitational conditions (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMD00089537 | Cucumis sativus var. sativus | Shinkasyuu-jibai | Wet side of longitudinally halved roots from cucumber seedlings germinated under stationary conditions without hydrostimulation | 109.3 |
| SAMD00089538 | Cucumis sativus var. sativus | Shinkasyuu-jibai | Dry side of longitudinally halved roots from cucumber seedlings germinated under stationary conditions without hydrostimulation | 102.73 |
| SAMD00089539 | Cucumis sativus var. sativus | Shinkasyuu-jibai | Wet side of longitudinally halved roots from cucumber seedlings germinated under stationary conditions and exposed to hydrostimulation | 123.04 |
| SAMD00089540 | Cucumis sativus var. sativus | Shinkasyuu-jibai | Dry side of longitudinally halved roots from cucumber seedlings germinated under stationary conditions and exposed to hydrostimulation | 119.74 |
| SAMD00089541 | Cucumis sativus var. sativus | Shinkasyuu-jibai | Wet side of longitudinally halved roots from cucumber seedlings germinated under stationary conditions and exposed to H2O saturation | 117.43 |
| SAMD00089542 | Cucumis sativus var. sativus | Shinkasyuu-jibai | Dry side of longitudinally halved roots from cucumber seedlings germinated under stationary conditions and exposed to H2O saturation | 113.59 |
| SAMD00089543 | Cucumis sativus var. sativus | Shinkasyuu-jibai | Wet side of longitudinally halved roots from germinated cucumber seedlings exposed to hydrostimulation under clinostat conditions for 4 h | 122.38 |
| SAMD00089544 | Cucumis sativus var. sativus | Shinkasyuu-jibai | Dry side of longitudinally halved roots from germinated cucumber seedlings exposed to hydrostimulation under clinostat conditions for 4 h | 113.62 |
| SAMD00089545 | Cucumis sativus var. sativus | Shinkasyuu-jibai | Wet side of longitudinally halved roots that bent to the water-absorbent plastic side after germinated cucumber seedlings exposed to H2O saturation under clinostat conditions for 4 h | 118.67 |
| SAMD00089546 | Cucumis sativus var. sativus | Shinkasyuu-jibai | Dry side of longitudinally halved roots that bent to the water-absorbent plastic side after germinated cucumber seedlings exposed to H2O saturation under clinostat conditions for 4 h | 114.68 |
| SAMD00089547 | Cucumis sativus var. sativus | Shinkasyuu-jibai | Wet side of longitudinally halved roots that bent away from the water-absorbent plastic side after germinated cucumber seedlings exposed to H2O saturation under clinostat conditions for 4 h | 120.74 |
| SAMD00089548 | Cucumis sativus var. sativus | Shinkasyuu-jibai | Dry side of longitudinally halved roots that bent away from the water-absorbent plastic side after germinated cucumber seedlings exposed to H2O saturation under clinostat conditions for 4 h | 119.03 |
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| PRJNA271595: Transcriptome profiling of root development (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN03275394 | Cucumis sativus | Gy14 | Root elongation zone | 51.05 |
| SAMN03275412 | Cucumis sativus | Gy14 | Root meristematic zone | 31.2 |
| SAMN03275424 | Cucumis sativus | Gy14 | Root differentiation zone | 64.88 |
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| PRJNA319011: Transcriptome profiles of seed from fruit at different developmental stages (non-strand-specific) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN04867895 | Cucumis sativus | Marketmore | Seed at 28 days after pollination | 2.18 |
| SAMN04867896 | Cucumis sativus | Marketmore | Seed at 37 days after pollination | 2.92 |
| SAMN04867897 | Cucumis sativus | Marketmore | Seed at 45 days after pollination | 6.42 |
| SAMN04867898 | Cucumis sativus | Marketmore | Seed at 60 days after pollination | 11.16 |
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| PRJNA359788: Transcriptomes of cucumber lines with different sex types (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN06198176 | Cucumis sativus | B10 | Shoot apex from monoecious B10 cucumber line - male | 72.07 |
| SAMN06198221 | Cucumis sativus | 859 | Shoot apex from androecious 859 cucumber line - male | 36.04 |
| SAMN06198177 | Cucumis sativus | Gy3 | Shoot apex from gynoecious Gy3 cucumber line - female | 38.98 |
| SAMN06198244 | Cucumis sativus | 2gg | Shoot apex from gynoecious 2gg cucumber line - female | 57.25 |
| SAMN06198219 | Cucumis sativus | Hgy3 | Shoot apex from hermaphrodite Hgy3 cucumber line - hermaphrodite | 38.35 |
| SAMN06198226 | Cucumis sativus | LH | Shoot apex from andromonoecious LH cucumber line - hermaphrodite | 40.62 |
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| PRJNA827999: Transcriptome profiling of shoot apex in determinate/indeterminate growth genotypes (non-strand-specific) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN27628251 | Cucumis sativus | D82 | Shoot apex of the first expanding leaf from the determinate growth genotype | 45.34 |
| SAMN27628254 | Cucumis sativus | CCMC | Shoot apex of the first expanding leaf from the indeterminate growth genotype | 24.85 |
| SAMN27628252 | Cucumis sativus | D82 | Shoot apex of the third expanding leaf from the determinate growth genotype | 62.88 |
| SAMN27628255 | Cucumis sativus | CCMC | Shoot apex of the third expanding leaf from the indeterminate growth genotype | 44.88 |
| SAMN27628253 | Cucumis sativus | D82 | Shoot apex of the sixth expanding leaf from the determinate growth genotype | 50.03 |
| SAMN27628256 | Cucumis sativus | CCMC | Shoot apex of the sixth expanding leaf from the indeterminate growth genotype | 49.33 |
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