CuGenDBv2

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PRJNA838740: Transcriptome profiling of fruit exocarp treated with ABA and then stored in cold (strand-specific; Publication)

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Sample ID	Species	Genotype	Description	Expression (FPKM)
SAMN28462261	Cucurbita pepo subsp. pepo	Sinatra	Exocarp of fruit submerged in distilled water, desiccated for 2 h and then stored in cold for 1 d	0
SAMN28462252	Cucurbita pepo subsp. pepo	Sinatra	Exocarp of fruit submerged in 0.5 mM of ABA, desiccated for 2 h and then stored in cold for 1 d	0.13
SAMN28462264	Cucurbita pepo subsp. pepo	Sinatra	Exocarp of fruit submerged in distilled water, desiccated for 2 h and then stored in cold for 5 d	0
SAMN28462255	Cucurbita pepo subsp. pepo	Sinatra	Exocarp of fruit submerged in 0.5 mM of ABA, desiccated for 2 h and then stored in cold for 5 d	0
SAMN28462258	Cucurbita pepo subsp. pepo	Sinatra	Exocarp of fruit submerged in distilled water, desiccated for 2 h and then stored in cold for 14 d	0
SAMN28462249	Cucurbita pepo subsp. pepo	Sinatra	Exocarp of fruit submerged in 0.5 mM of ABA, desiccated for 2 h and then stored in cold for 14 d	0
SAMN28462267	Cucurbita pepo subsp. pepo	Sinatra	Exocarp of freshly harvested fruit	0.11

PRJNA726825: Transcriptome responses to copper oxide (CuO) nanoparticles (strand-specific; Publication)

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Sample ID	Species	Genotype	Description	Expression (FPKM)
SAMN18962951	Cucurbita pepo	Costata Romanesco	Pollen from zucchini grown in pot soil for 60 days	0
SAMN18962960	Cucurbita pepo	Costata Romanesco	Pollen from zucchini grown in pot soil for 60 days, with addition of CuSO4 5H2O (320 mg kg-1)	0
SAMN18962949	Cucurbita pepo	Costata Romanesco	Pollen from zucchini grown in pot soil for 60 days, with addition of CuO raw material (100 mg kg-1)	0
SAMN18962950	Cucurbita pepo	Costata Romanesco	Pollen from zucchini grown in pot soil for 60 days, with addition of CuO nanoparticles (100 mg kg-1)	0
SAMN18962955	Cucurbita pepo	Costata Romanesco	Leaf from zucchini grown in pot soil for 60 days	0
SAMN18962952	Cucurbita pepo	Costata Romanesco	Leaf from zucchini grown in pot soil for 60 days, with addition of CuSO4 5H2O (320 mg kg-1)	0.14
SAMN18962953	Cucurbita pepo	Costata Romanesco	Leaf from zucchini grown in pot soil for 60 days, with addition of CuO raw material (100 mg kg-1)	0.29
SAMN18962954	Cucurbita pepo	Costata Romanesco	Leaf from zucchini grown in pot soil for 60 days, with addition of CuO nanoparticles (100 mg kg-1)	0.07
SAMN18962959	Cucurbita pepo	Costata Romanesco	Root from zucchini grown in pot soil for 60 days	0.91
SAMN18962956	Cucurbita pepo	Costata Romanesco	Root from zucchini grown in pot soil for 60 days, with addition of CuSO4 5H2O (320 mg kg-1)	1.29
SAMN18962957	Cucurbita pepo	Costata Romanesco	Root from zucchini grown in pot soil for 60 days, with addition of CuO raw material (100 mg kg-1)	1.46
SAMN18962958	Cucurbita pepo	Costata Romanesco	Root from zucchini grown in pot soil for 60 days, with addition of CuO nanoparticles (100 mg kg-1)	0.96

PRJNA439198: Transcriptome responses to Aphis gossypii feeding (strand-specific; Publication)

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Sample ID	Species	Genotype	Description	Expression (FPKM)
SAMN08742113	Cucurbita pepo subsp. pepo	San Pasquale	Leaf of uninfested zucchini plant at 24h	0.13
SAMN08742104	Cucurbita pepo subsp. pepo	San Pasquale	Leaf of infested zucchini plant after 24h of Aphis gossypii feeding	0.21
SAMN08742116	Cucurbita pepo subsp. pepo	San Pasquale	Leaf of uninfested zucchini plant at 48h	0.07
SAMN08742107	Cucurbita pepo subsp. pepo	San Pasquale	Leaf of infested zucchini plant after 48h of Aphis gossypii feeding	0.38
SAMN08742119	Cucurbita pepo subsp. pepo	San Pasquale	Leaf of uninfested zucchini plant at 96h	0.04
SAMN08742110	Cucurbita pepo subsp. pepo	San Pasquale	Leaf of infested zucchini plant after 96h of Aphis gossypii feeding	0

PRJNA669995: Transcriptome responses to ZYMV (strand-specific)

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Sample ID	Species	Genotype	Description	Expression (FPKM)
SAMN16474370	Cucurbita pepo	True French	Leaf of susceptible line at 12 days post inoculation of ZYMV	0.19
SAMN16474372	Cucurbita pepo	381e	Leaf of resistant line at 12 days post inoculation of ZYMV	0.25

PRJNA339848: Comparative transcriptome analysis of fruit development in acorn squash and oilseed pumpkin (non-strand-specific; Publication)

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Sample ID	Species	Genotype	Description	Expression (FPKM)
SAMN05608084	Cucurbita pepo	Lady Godiva	Fruit mesocarp at 5 days after pollination	0.51
SAMN05608086	Cucurbita pepo	Lady Godiva	Fruit mesocarp at 10 days after pollination	0
SAMN05608088	Cucurbita pepo	Lady Godiva	Fruit mesocarp at 15 days after pollination	0.1
SAMN05608090	Cucurbita pepo	Lady Godiva	Fruit mesocarp at 20 days after pollination	0
SAMN05608092	Cucurbita pepo	Lady Godiva	Fruit mesocarp at 40 days after pollination	0
SAMN05608094	Cucurbita pepo	Sweet REBA	Fruit mesocarp at 5 days after pollination	0.57
SAMN05608096	Cucurbita pepo	Sweet REBA	Fruit mesocarp at 10 days after pollination	0.21
SAMN05608098	Cucurbita pepo	Sweet REBA	Fruit mesocarp at 15 days after pollination	0.04
SAMN05608100	Cucurbita pepo	Sweet REBA	Fruit mesocarp at 20 days after pollination	0.2
SAMN05608102	Cucurbita pepo	Sweet REBA	Fruit mesocarp at 40 days after pollination	0
SAMN05608085	Cucurbita pepo	Lady Godiva	Seed at 5 days after pollination	0.53
SAMN05608087	Cucurbita pepo	Lady Godiva	Seed at 10 days after pollination	0.06
SAMN05608089	Cucurbita pepo	Lady Godiva	Seed at 15 days after pollination	1.03
SAMN05608091	Cucurbita pepo	Lady Godiva	Seed at 20 days after pollination	2.28
SAMN05608093	Cucurbita pepo	Lady Godiva	Seed at 40 days after pollination	0.28
SAMN05608095	Cucurbita pepo	Sweet REBA	Seed at 5 days after pollination	0.46
SAMN05608097	Cucurbita pepo	Sweet REBA	Seed at 10 days after pollination	0.09
SAMN05608099	Cucurbita pepo	Sweet REBA	Seed at 15 days after pollination	3.27
SAMN05608101	Cucurbita pepo	Sweet REBA	Seed at 20 days after pollination	2.96
SAMN05608103	Cucurbita pepo	Sweet REBA	Seed at 40 days after pollination	0.17

PRJNA499783: PRJNA499783Fruit transcriptomes of parthenocarpic and non-parthenocarpic cultivars (non-strand-specific; Publication)

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Sample ID	Species	Genotype	Description	Expression (FPKM)
SAMN10345060	Cucurbita pepo	MUCU-16	Unpollinated fruit of non-parthenocarpic cultivar	0.67
SAMN10345061	Cucurbita pepo	MUCU-16	Pollinated fruit of non-parthenocarpic cultivar	3.31
SAMN10345062	Cucurbita pepo	MUCU-16	Auxin treated fruit of non-parthenocarpic cultivar	1.62
SAMN10345063	Cucurbita pepo	Whitaker	Unpollinated fruit of parthenocarpic cultivar	0.7
SAMN10345064	Cucurbita pepo	Whitaker	Pollinated fruit of parthenocarpic cultivar	3.19
SAMN10345065	Cucurbita pepo	Whitaker	Auxin treated fruit of parthenocarpic cultivar	1.03

PRJNA386743: Transcriptomes of young leaves from different Cucurbita lines (strand-specific; Publication)

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Sample ID	Species	Genotype	Description	Expression (FPKM)
SAMN07224650	Cucurbita pepo	CATIE-11368	Young leaves	5.28
SAMN07224653	Cucurbita pepo	CATIE-18887	Young leaves	0.37
SAMN07224674	Cucurbita pepo	PI 532354	Young leaves	2.96
SAMN07224680	Cucurbita pepo	PI 614701	Young leaves	0
SAMN07224681	Cucurbita pepo	PI 615111	Young leaves	7.34

PRJNA663796: Transcriptome profiling of different squash tissues (non-strand-specific; Publication)

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Sample ID	Species	Genotype	Description	Expression (FPKM)
SAMN16179729	Cucurbita pepo	Kompokolokytho	Fruit at 2 days after pollination	18.46
SAMN16179730	Cucurbita pepo	Kompokolokytho	Fruit at 7 days after pollination	13.27
SAMN16179731	Cucurbita pepo	Kompokolokytho	Fruit at 10 days after pollination	4.32
SAMN16179732	Cucurbita pepo	Kompokolokytho	Fruit at 15 days after pollination	2.89
SAMN16179733	Cucurbita pepo	Kompokolokytho	Fruit at 20 days after pollination	2.12
SAMN16179734	Cucurbita pepo	Kompokolokytho	Fruit at 30 days after pollination	2.21
SAMN16179735	Cucurbita pepo	Kompokolokytho	Fruit at 40 days after pollination	0.07
SAMN16179722	Cucurbita pepo	Kompokolokytho	Seed	2
SAMN16179723	Cucurbita pepo	Kompokolokytho	Shoot	0.77
SAMN16179724	Cucurbita pepo	Kompokolokytho	Stem	4.49
SAMN16179725	Cucurbita pepo	Kompokolokytho	Young leaf	4.7
SAMN16179726	Cucurbita pepo	Kompokolokytho	Developed leaf	0.82
SAMN16179727	Cucurbita pepo	Kompokolokytho	Male flower	0
SAMN16179728	Cucurbita pepo	Kompokolokytho	Female flower	0.85
SAMN16179736	Cucurbita pepo	Kompokolokytho	Primary root	6.16
SAMN16179737	Cucurbita pepo	Kompokolokytho	Lateral root	4.58

PRJNA437911: Transcriptomes of female and male nectaries at different stages of floral maturation (non-strand-specific; Publication)

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Sample ID	Species	Genotype	Description	Expression (FPKM)
SAMN08687067	Cucurbita pepo	NA	Male nectaries at full anthesis, 2-3�hr after dawn (secretory)	0
SAMN08687100	Cucurbita pepo	NA	Male nectaries at 9�hr after the 'secretory' stage	0
SAMN08687068	Cucurbita pepo	NA	Male nectaries at 15�hr prior to anthesis (nectar secretion)	0
SAMN08687071	Cucurbita pepo	NA	Male nectaries at 24�hr prior to anthesis (nectar secretion)	0
SAMN08687077	Cucurbita pepo	NA	Female nectaries at full anthesis, 2-3�hr after dawn (secretory)	0
SAMN08687074	Cucurbita pepo	NA	Female nectaries at 9�hr after the 'secretory' stage	0
SAMN08687080	Cucurbita pepo	NA	Female nectaries at 15�hr prior to anthesis (nectar secretion)	0
SAMN08687082	Cucurbita pepo	NA	Female nectaries at 24�hr prior to anthesis (nectar secretion)	0.05

PRJNA752874: Seed coat transcriptome of hulled and hulless ecotypes (non-strand-specific)

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Sample ID	Species	Genotype	Description	Expression (FPKM)
SAMN20665548	Cucurbita pepo	NA	Seed coat of hulled ecotype at 8 days after pollination	1.35
SAMN20665551	Cucurbita pepo	NA	Seed coat of hulled ecotype at 18 days after pollination	0.03
SAMN20665554	Cucurbita pepo	NA	Seed coat of hulled ecotype at 28 days after pollination	0.04
SAMN20665557	Cucurbita pepo	NA	Seed coat of hulless ecotype at 8 days after pollination	0.78
SAMN20665560	Cucurbita pepo	NA	Seed coat of hulless ecotype at 18 days after pollination	0.06
SAMN20665563	Cucurbita pepo	NA	Seed coat of hulless ecotype at 28 days after pollination	0.04

PRJNA843470: Seed coat transcriptome of hulled and hulless ecotypes (non-strand-specific; Publication)

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Sample ID	Species	Genotype	Description	Expression (FPKM)
SAMN28743097	Cucurbita pepo	H	hulled seed coat at 5 days after pollination	1.03
SAMN28743088	Cucurbita pepo	HL	hulled-less seed coat at 5 days after pollination	0.49
SAMN28743094	Cucurbita pepo	H	hulled seed coat at 10 days after pollination	0.2
SAMN28743085	Cucurbita pepo	HL	hulled-less seed coat at 10 days after pollination	0
SAMN28743091	Cucurbita pepo	H	hulled seed coat at 20 days after pollination	2.21
SAMN28743082	Cucurbita pepo	HL	hulled-less seed coat at 20 days after pollination	0.04

Expression of Cp4.1LG11g01700 [Cucurbita pepo (MU-CU-16) v4.1]