| PRJNA838740: Transcriptome profiling of fruit exocarp treated with ABA and then stored in cold (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN28462261 | Cucurbita pepo subsp. pepo | Sinatra | Exocarp of fruit submerged in distilled water, desiccated for 2 h and then stored in cold for 1 d | 1.69 |
| SAMN28462252 | Cucurbita pepo subsp. pepo | Sinatra | Exocarp of fruit submerged in 0.5 mM of ABA, desiccated for 2 h and then stored in cold for 1 d | 1.66 |
| SAMN28462264 | Cucurbita pepo subsp. pepo | Sinatra | Exocarp of fruit submerged in distilled water, desiccated for 2 h and then stored in cold for 5 d | 0.58 |
| SAMN28462255 | Cucurbita pepo subsp. pepo | Sinatra | Exocarp of fruit submerged in 0.5 mM of ABA, desiccated for 2 h and then stored in cold for 5 d | 0.56 |
| SAMN28462258 | Cucurbita pepo subsp. pepo | Sinatra | Exocarp of fruit submerged in distilled water, desiccated for 2 h and then stored in cold for 14 d | 0.6 |
| SAMN28462249 | Cucurbita pepo subsp. pepo | Sinatra | Exocarp of fruit submerged in 0.5 mM of ABA, desiccated for 2 h and then stored in cold for 14 d | 0.5 |
| SAMN28462267 | Cucurbita pepo subsp. pepo | Sinatra | Exocarp of freshly harvested fruit | 3.84 |
|
| PRJNA726825: Transcriptome responses to copper oxide (CuO) nanoparticles (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN18962951 | Cucurbita pepo | Costata Romanesco | Pollen from zucchini grown in pot soil for 60 days | 0.04 |
| SAMN18962960 | Cucurbita pepo | Costata Romanesco | Pollen from zucchini grown in pot soil for 60 days, with addition of CuSO4 5H2O (320 mg kg-1) | 0.12 |
| SAMN18962949 | Cucurbita pepo | Costata Romanesco | Pollen from zucchini grown in pot soil for 60 days, with addition of CuO raw material (100 mg kg-1) | 0.09 |
| SAMN18962950 | Cucurbita pepo | Costata Romanesco | Pollen from zucchini grown in pot soil for 60 days, with addition of CuO nanoparticles (100 mg kg-1) | 0 |
| SAMN18962955 | Cucurbita pepo | Costata Romanesco | Leaf from zucchini grown in pot soil for 60 days | 0.44 |
| SAMN18962952 | Cucurbita pepo | Costata Romanesco | Leaf from zucchini grown in pot soil for 60 days, with addition of CuSO4 5H2O (320 mg kg-1) | 9.2 |
| SAMN18962953 | Cucurbita pepo | Costata Romanesco | Leaf from zucchini grown in pot soil for 60 days, with addition of CuO raw material (100 mg kg-1) | 11.39 |
| SAMN18962954 | Cucurbita pepo | Costata Romanesco | Leaf from zucchini grown in pot soil for 60 days, with addition of CuO nanoparticles (100 mg kg-1) | 0.88 |
| SAMN18962959 | Cucurbita pepo | Costata Romanesco | Root from zucchini grown in pot soil for 60 days | 6.51 |
| SAMN18962956 | Cucurbita pepo | Costata Romanesco | Root from zucchini grown in pot soil for 60 days, with addition of CuSO4 5H2O (320 mg kg-1) | 6.28 |
| SAMN18962957 | Cucurbita pepo | Costata Romanesco | Root from zucchini grown in pot soil for 60 days, with addition of CuO raw material (100 mg kg-1) | 6.27 |
| SAMN18962958 | Cucurbita pepo | Costata Romanesco | Root from zucchini grown in pot soil for 60 days, with addition of CuO nanoparticles (100 mg kg-1) | 9.68 |
|
| PRJNA439198: Transcriptome responses to Aphis gossypii feeding (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN08742113 | Cucurbita pepo subsp. pepo | San Pasquale | Leaf of uninfested zucchini plant at 24h | 5.22 |
| SAMN08742104 | Cucurbita pepo subsp. pepo | San Pasquale | Leaf of infested zucchini plant after 24h of Aphis gossypii feeding | 5.78 |
| SAMN08742116 | Cucurbita pepo subsp. pepo | San Pasquale | Leaf of uninfested zucchini plant at 48h | 2.92 |
| SAMN08742107 | Cucurbita pepo subsp. pepo | San Pasquale | Leaf of infested zucchini plant after 48h of Aphis gossypii feeding | 7.81 |
| SAMN08742119 | Cucurbita pepo subsp. pepo | San Pasquale | Leaf of uninfested zucchini plant at 96h | 3.88 |
| SAMN08742110 | Cucurbita pepo subsp. pepo | San Pasquale | Leaf of infested zucchini plant after 96h of Aphis gossypii feeding | 1.45 |
|
| PRJNA669995: Transcriptome responses to ZYMV (strand-specific) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN16474370 | Cucurbita pepo | True French | Leaf of susceptible line at 12 days post inoculation of ZYMV | 10.21 |
| SAMN16474372 | Cucurbita pepo | 381e | Leaf of resistant line at 12 days post inoculation of ZYMV | 9.05 |
|
| PRJNA339848: Comparative transcriptome analysis of fruit development in acorn squash and oilseed pumpkin (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN05608084 | Cucurbita pepo | Lady Godiva | Fruit mesocarp at 5 days after pollination | 10.88 |
| SAMN05608086 | Cucurbita pepo | Lady Godiva | Fruit mesocarp at 10 days after pollination | 10.86 |
| SAMN05608088 | Cucurbita pepo | Lady Godiva | Fruit mesocarp at 15 days after pollination | 6.26 |
| SAMN05608090 | Cucurbita pepo | Lady Godiva | Fruit mesocarp at 20 days after pollination | 2.61 |
| SAMN05608092 | Cucurbita pepo | Lady Godiva | Fruit mesocarp at 40 days after pollination | 2.05 |
| SAMN05608094 | Cucurbita pepo | Sweet REBA | Fruit mesocarp at 5 days after pollination | 18.82 |
| SAMN05608096 | Cucurbita pepo | Sweet REBA | Fruit mesocarp at 10 days after pollination | 22.25 |
| SAMN05608098 | Cucurbita pepo | Sweet REBA | Fruit mesocarp at 15 days after pollination | 18.68 |
| SAMN05608100 | Cucurbita pepo | Sweet REBA | Fruit mesocarp at 20 days after pollination | 10.21 |
| SAMN05608102 | Cucurbita pepo | Sweet REBA | Fruit mesocarp at 40 days after pollination | 10.22 |
| SAMN05608085 | Cucurbita pepo | Lady Godiva | Seed at 5 days after pollination | 8.67 |
| SAMN05608087 | Cucurbita pepo | Lady Godiva | Seed at 10 days after pollination | 8.05 |
| SAMN05608089 | Cucurbita pepo | Lady Godiva | Seed at 15 days after pollination | 4.27 |
| SAMN05608091 | Cucurbita pepo | Lady Godiva | Seed at 20 days after pollination | 4.44 |
| SAMN05608093 | Cucurbita pepo | Lady Godiva | Seed at 40 days after pollination | 2.7 |
| SAMN05608095 | Cucurbita pepo | Sweet REBA | Seed at 5 days after pollination | 19.84 |
| SAMN05608097 | Cucurbita pepo | Sweet REBA | Seed at 10 days after pollination | 18.76 |
| SAMN05608099 | Cucurbita pepo | Sweet REBA | Seed at 15 days after pollination | 9.48 |
| SAMN05608101 | Cucurbita pepo | Sweet REBA | Seed at 20 days after pollination | 10.54 |
| SAMN05608103 | Cucurbita pepo | Sweet REBA | Seed at 40 days after pollination | 4.05 |
|
| PRJNA499783: PRJNA499783Fruit transcriptomes of parthenocarpic and non-parthenocarpic cultivars (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN10345060 | Cucurbita pepo | MUCU-16 | Unpollinated fruit of non-parthenocarpic cultivar | 32.16 |
| SAMN10345061 | Cucurbita pepo | MUCU-16 | Pollinated fruit of non-parthenocarpic cultivar | 36.87 |
| SAMN10345062 | Cucurbita pepo | MUCU-16 | Auxin treated fruit of non-parthenocarpic cultivar | 34.82 |
| SAMN10345063 | Cucurbita pepo | Whitaker | Unpollinated fruit of parthenocarpic cultivar | 22.56 |
| SAMN10345064 | Cucurbita pepo | Whitaker | Pollinated fruit of parthenocarpic cultivar | 32.61 |
| SAMN10345065 | Cucurbita pepo | Whitaker | Auxin treated fruit of parthenocarpic cultivar | 32.28 |
|
| PRJNA386743: Transcriptomes of young leaves from different Cucurbita lines (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN07224650 | Cucurbita pepo | CATIE-11368 | Young leaves | 41.32 |
| SAMN07224653 | Cucurbita pepo | CATIE-18887 | Young leaves | 22.54 |
| SAMN07224674 | Cucurbita pepo | PI 532354 | Young leaves | 38.46 |
| SAMN07224680 | Cucurbita pepo | PI 614701 | Young leaves | 39.15 |
| SAMN07224681 | Cucurbita pepo | PI 615111 | Young leaves | 45.17 |
|
| PRJNA663796: Transcriptome profiling of different squash tissues (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN16179729 | Cucurbita pepo | Kompokolokytho | Fruit at 2 days after pollination | 20.78 |
| SAMN16179730 | Cucurbita pepo | Kompokolokytho | Fruit at 7 days after pollination | 21.02 |
| SAMN16179731 | Cucurbita pepo | Kompokolokytho | Fruit at 10 days after pollination | 17.86 |
| SAMN16179732 | Cucurbita pepo | Kompokolokytho | Fruit at 15 days after pollination | 22.82 |
| SAMN16179733 | Cucurbita pepo | Kompokolokytho | Fruit at 20 days after pollination | 22.05 |
| SAMN16179734 | Cucurbita pepo | Kompokolokytho | Fruit at 30 days after pollination | 18.51 |
| SAMN16179735 | Cucurbita pepo | Kompokolokytho | Fruit at 40 days after pollination | 8.79 |
| SAMN16179722 | Cucurbita pepo | Kompokolokytho | Seed | 8.78 |
| SAMN16179723 | Cucurbita pepo | Kompokolokytho | Shoot | 14.53 |
| SAMN16179724 | Cucurbita pepo | Kompokolokytho | Stem | 13.44 |
| SAMN16179725 | Cucurbita pepo | Kompokolokytho | Young leaf | 20.95 |
| SAMN16179726 | Cucurbita pepo | Kompokolokytho | Developed leaf | 8.91 |
| SAMN16179727 | Cucurbita pepo | Kompokolokytho | Male flower | 3.42 |
| SAMN16179728 | Cucurbita pepo | Kompokolokytho | Female flower | 18.73 |
| SAMN16179736 | Cucurbita pepo | Kompokolokytho | Primary root | 14.25 |
| SAMN16179737 | Cucurbita pepo | Kompokolokytho | Lateral root | 11.32 |
|
| PRJNA437911: Transcriptomes of female and male nectaries at different stages of floral maturation (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN08687067 | Cucurbita pepo | NA | Male nectaries at full anthesis, 2-3 hr after dawn (secretory) | 0.11 |
| SAMN08687100 | Cucurbita pepo | NA | Male nectaries at 9 hr after the 'secretory' stage | 0.07 |
| SAMN08687068 | Cucurbita pepo | NA | Male nectaries at 15 hr prior to anthesis (nectar secretion) | 0.59 |
| SAMN08687071 | Cucurbita pepo | NA | Male nectaries at 24 hr prior to anthesis (nectar secretion) | 0.91 |
| SAMN08687077 | Cucurbita pepo | NA | Female nectaries at full anthesis, 2-3 hr after dawn (secretory) | 0.22 |
| SAMN08687074 | Cucurbita pepo | NA | Female nectaries at 9 hr after the 'secretory' stage | 0 |
| SAMN08687080 | Cucurbita pepo | NA | Female nectaries at 15 hr prior to anthesis (nectar secretion) | 0.77 |
| SAMN08687082 | Cucurbita pepo | NA | Female nectaries at 24 hr prior to anthesis (nectar secretion) | 8.16 |
|
| PRJNA752874: Seed coat transcriptome of hulled and hulless ecotypes (non-strand-specific) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN20665548 | Cucurbita pepo | NA | Seed coat of hulled ecotype at 8 days after pollination | 32.43 |
| SAMN20665551 | Cucurbita pepo | NA | Seed coat of hulled ecotype at 18 days after pollination | 16.44 |
| SAMN20665554 | Cucurbita pepo | NA | Seed coat of hulled ecotype at 28 days after pollination | 22.41 |
| SAMN20665557 | Cucurbita pepo | NA | Seed coat of hulless ecotype at 8 days after pollination | 29.65 |
| SAMN20665560 | Cucurbita pepo | NA | Seed coat of hulless ecotype at 18 days after pollination | 26.24 |
| SAMN20665563 | Cucurbita pepo | NA | Seed coat of hulless ecotype at 28 days after pollination | 20.5 |
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| PRJNA843470: Seed coat transcriptome of hulled and hulless ecotypes (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN28743097 | Cucurbita pepo | H | hulled seed coat at 5 days after pollination | 16.71 |
| SAMN28743088 | Cucurbita pepo | HL | hulled-less seed coat at 5 days after pollination | 9.99 |
| SAMN28743094 | Cucurbita pepo | H | hulled seed coat at 10 days after pollination | 16.98 |
| SAMN28743085 | Cucurbita pepo | HL | hulled-less seed coat at 10 days after pollination | 30.17 |
| SAMN28743091 | Cucurbita pepo | H | hulled seed coat at 20 days after pollination | 6.9 |
| SAMN28743082 | Cucurbita pepo | HL | hulled-less seed coat at 20 days after pollination | 10.75 |
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