CuGenDBv2

Cucurbita argyrosperma

Project ID	Title	Publication	Date collected from SRA
PRJNA386743	Transcriptomes of young leaves from different Cucurbita lines	Publication	02/01/22
PRJNA485527	Transcriptome profiling of different tissues		02/01/22

Cucurbita maxima

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Project ID	Title	Publication	Date collected from SRA
PRJNA689711	Transcriptome responses to cold stress	Publication	02/01/22
PRJNA464060	Leaf transcriptome responses to salt stress	Publication	02/01/22
PRJNA797701	Transcriptome difference of fruits from two different varieties		02/01/22
PRJNA721571	Comparative transcriptome analysis in homo- and hetero- grafted cucurbit seedlings	Publication	02/01/22
PRJNA386743	Transcriptomes of young leaves from different Cucurbita lines	Publication	02/01/22
PRJNA385310	Transcriptome profiling of different tissues	Publication	02/01/22
SRP012853	Phloem sap and vascular transcriptomes	Publication	02/01/22

Cucurbita moschata

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Project ID	Title	Publication	Date collected from SRA
PRJNA736171	Transcriptional responses to ethephon treatment	Publication	02/01/22
PRJNA838377	Transcriptional responses to silver thiosulfate treatment		08/01/22
PRJNA714557	Transcriptome responses to cold stress		02/01/22
PRJNA725346	Transcriptome responses to heat stress		08/01/22
PRJNA725489	Transcriptome responses to far red light	Publication	02/01/22
PRJNA788554	Transcriptome profiling of different tissues of grafted plants under different light treatments		02/01/22
PRJNA437579	Root transcriptome responses to salt stress	Publication	02/01/22
PRJNA464060	Leaf transcriptome responses to salt stress	Publication	02/01/22
PRJNA729180	Transcriptome responses to Fusarium wilt	Publication	02/01/22
PRJNA629657	Transcriptome profiling of fruit development	Publication	02/01/22
PRJNA552914	Trancriptome profiling of homo- and hetero-grafted plants	Publication	02/01/22
PRJNA718902	Transcriptome profiling of root from grafted plants	Publication	08/01/22
PRJNA386743	Transcriptomes of young leaves from different Cucurbita lines	Publication	02/01/22
PRJNA385310	Transcriptome profiling of different tissues	Publication	02/01/22
PRJNA554766	Transcriptome profiling of pistils from normal and aborted female flowers	Publication	02/01/22

Cucurbita pepo

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Project ID	Title	Publication	Date collected from SRA
PRJNA838740	Transcriptome profiling of fruit exocarp treated with ABA and then stored in cold	Publication	08/01/22
PRJNA726825	Transcriptome responses to copper oxide (CuO) nanoparticles	Publication	02/01/22
PRJNA439198	Transcriptome responses to Aphis gossypii feeding	Publication	02/01/22
PRJNA669995	Transcriptome responses to ZYMV		02/01/22
PRJNA339848	Comparative transcriptome analysis of fruit development in acorn squash and oilseed pumpkin	Publication	02/01/22
PRJNA499783	PRJNA499783Fruit transcriptomes of parthenocarpic and non-parthenocarpic cultivars	Publication	02/01/22
PRJNA386743	Transcriptomes of young leaves from different Cucurbita lines	Publication	02/01/22
PRJNA663796	Transcriptome profiling of different squash tissues	Publication	02/01/22
PRJNA437911	Transcriptomes of female and male nectaries at different stages of floral maturation	Publication	02/01/22
PRJNA752874	Seed coat transcriptome of hulled and hulless ecotypes		02/01/22
PRJNA843470	Seed coat transcriptome of hulled and hulless ecotypes	Publication	08/01/22

Bitter gourd (Momordica charantia)

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Project ID	Title	Publication	Date collected from SRA
PRJNA613314	Transcriptome responses of bitter gourd to ethephon inducement	Publication	02/01/22
PRJNA598964	Root transcriptomes of bitter gourd inoculated with Fusarium oxysporum and/or Talaromyces purpurogenus	Publication	02/01/22
PRJNA687997	Transcriptome profiling of different bitter gourd tissues	Publication	02/01/22
PRJNA319011	Transcriptome profiles of seed from fruit at different developmental stages		02/01/22

Bottle gourd (Lagenaria siceraria)

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Project ID	Title	Publication	Date collected from SRA
PRJNA553072	Transcriptome responses of grafted plants to chilling	Publication	02/01/22
PRJNA793252	Transcritome responses to powdery mildew disease	Publication	02/01/22
PRJNA576654	Transcriptome changes in reciprocal grafts involving watermelon and bottle gourd	Publication	02/01/22
PRJNA200441	Transcriptome profiles of four major tissues (leaf, root, ovary and fruit)	Publication	02/01/22
PRJNA387615	Transcriptomes of different bottle gourd tissues	Publication	02/01/22
SRP095913	Transcriptome profiles of ovary development		02/01/22

Cucumber (Cucumis hystrix)

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Project ID	Title	Publication	Date collected from SRA
PRJNA419623	Transcriptome responses to salt stress		02/01/22
PRJNA649392	Transcriptomes of Cucumis hystrix	Publication	02/01/22

Cucumber (Cucumis sativus)

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Project ID	Title	Publication	Date collected from SRA
PRJNA376073	Transcriptome responses to GA3	Publication	02/01/22
PRJNA613788	Transcriptome response to sugar treatment	Publication	08/01/22
PRJNA667293	Transcriptome profiling of lateral root development regulated by GA3	Publication	02/01/22
PRJNA782544	Transcriptome responses to ethrel		02/01/22
PRJNA316747	Transcriptomes of cucumber roots inoculated by AMF (Rhizophagus irregularis) under low temperature	Publication	02/01/22
PRJNA438923	Transcriptome responses to chilling stress		02/01/22
PRJNA701131	Transcriptome responses of grafted cucumber to cold stress	Publication	02/01/22
PRJNA817708	Transcriptome responses to cold stress	Publication	08/01/22
PRJNA720243	Transcriptome response of grafted cucumber to drought stress	Publication	08/01/22
PRJEB7612	Transcriptome response to silicon treatment	Publication	02/01/22
PRJNA307279	Transcriptome profiles of grafted plants under Pi stress	Publication	02/01/22
PRJNA523714	Transcriptome profiling of C. campestris-connected cucumber plant clusters under nitrogen-depleted condition	Publication	02/01/22
PRJNA765376	Transcriptome responses to Sulfur (S) fumigation	Publication	02/01/22
PRJNA634519	Transcriptome response to high temperature stress		02/01/22
PRJNA748460	Transcriptome profiling of male flower development under heat stress	Publication	02/01/22
PRJNA380322	Transcriptome responses to temperature and photoperiod	Publication	02/01/22
PRJNA475903	Transcriptome responses to photoperiod treatment	Publication	02/01/22
PRJNA476021	Transcriptome responses to different ratios of blue and red light	Publication	02/01/22
PRJNA782229	Transcriptome profiling of fruit development under different photoperiod treatment		02/01/22
PRJNA437579	Root transcriptome responses to salt stress	Publication	02/01/22
PRJNA477930	Transcriptome responses to salt stress and silicon treatment	Publication	02/01/22
PRJNA511946	Transcriptome response to salt stress	Publication	02/01/22
PRJNA524275	Transcriptome profiling of C. campestris-connected cucumber plant clusters under salt stress	Publication	02/01/22
PRJNA563457	Transcriptome responses to H2S-regulated salt stress	Publication	02/01/22
PRJNA678740	Transcriptome responses to long-term waterlogging	Publication	02/01/22
PRJNA799460	Transcriptome responses of hypocotyl to different waterlogging stress treatments		08/01/22
PRJNA844418	Transcriptome responses of different tissues of hypocotyl to waterlogging		08/01/22
PRJNA563186	Transcriptome responses to Alternaria cucumerina (alternaria leaf spot)	Publication	02/01/22
PRJNA388584	Transcriptome responses to downy mildew		02/01/22
PRJNA544259	Transcriptome responses to downy mildew	Publication	02/01/22
PRJNA776553	Garlic volatile diallyl disulfide (DADS) induced cucumber resistance to downy mildew	Publication	02/01/22
PRJNA472169	Transcriptome responses to Fusarium oxysporum	Publication	02/01/22
PRJNA484083	Transcriptome profiling of cucumber Fusarium wilt resistance induced by intercropping with celery	Publication	02/01/22
PRJNA750577	Transcriptome responses of CsRbohB-RNAi lines to Fusarium oxysporum		02/01/22
PRJNA419665	Transcriptome responses to nematode infection	Publication	02/01/22
PRJNA445328	Transcriptome responses to biocontrol agent Trichoderma longibrachiatum	Publication	02/01/22
PRJNA285071	Transcriptome responses to Pseudoperonospora cubensis (downy mildew)	Publication	02/01/22
PRJNA292785	Transcriptome response by physcion and chrysophanol against cucumber powdery mildew	Publication	02/01/22
PRJNA321023	Transcriptome responses to powdery mildew disease	Publication	02/01/22
PRJNA603869	Transcriptome responses to powdery mildew disease	Publication	02/01/22
PRJNA816625	Transcriptome response to Podosphaera xanthii (powdery mildew)	Publication	08/01/22
PRJNA704621	Transcriptome responses to Pseudomonas syringae pv. lachrymans (Psl)	Publication	02/01/22
PRJNA345040	Transcriptomes of peels from fruit differing in age-related resistance to Phytophthora capsici	Publication	02/01/22
PRJNA575868	Transcriptomes of fruit peel in response to Phytophthora capsici (fruit rot)	Publication	02/01/22
PRJNA646644	Transcriptome responses to cucumber green mottle mosaic virus	Publication	02/01/22
PRJNA701150	Transcriptome responses to cucumber green mottle mosaic virus (CGMMV)	Publication	02/01/22
PRJNA837466	Transcriptome response to Prunus necrotic ringspot virus	Publication	08/01/22
PRJNA307098	Transcriptome profiling of corolla opening	Publication	02/01/22
PRJNA783663	Time-course transcriptome of multicellular trichomes	Publication	02/01/22
PRJNA258122	Transcriptomes of early fruits	Publication	02/01/22
PRJNA381300	Transcriptome profiling of fruits and leaves	Publication	02/01/22
PRJNA448682	Transcriptome profiling of fruit development	Publication	02/01/22
PRJNA517913	Transcriptomes of fruits in lines with different carpel numbers	Publication	02/01/22
PRJNA558838	Transcriptome profiling of fruit development	Publication	02/01/22
PRJNA564950	Transcriptome profiling of mesocarp development	Publication	02/01/22
PRJNA647135	Transcriptomes of fruit skin with different colors	Publication	02/01/22
PRJNA678478	Transcriptome profiling of fruit peels with different colors	Publication	02/01/22
PRJNA707246	Transcriptome profiling of yellow and white fruit flesh		08/01/22
PRJNA817515	Transcriptomes of fruit flesh and peel	Publication	08/01/22
PRJNA660492	Transcriptome profiling of fruit spine development	Publication	02/01/22
PRJNA852610	Transcriptome profiling of fruit spine		08/01/22
PRJNA552914	Trancriptome profiling of homo- and hetero-grafted plants	Publication	02/01/22
PRJNA317163	Grafting changed silicon metabolism and expression of bloom-forming related genes		02/01/22
PRJNA612596	Transcriptomes of virescent leaf and green leaf	Publication	02/01/22
PRJNA312872	Transcriptome atlas of cucumber	Publication	02/01/22
PRJNA752681	Transcriptomes of a dark green genotype	Publication	02/01/22
PRJNA80169	Transcriptomes of different cucumber tissues	Publication	02/01/22
PRJNA773731	Transcriptomes of apical pistils in wild-type and mutants	Publication	08/01/22
PRJNA510369	Transcriptome of lateral bud of CsBRC1 RNAi line	Publication	02/01/22
PRJNA700062	Transcriptomes of Cshec2 CRISPR mutant	Publication	02/01/22
PRJNA685868	Transcriptomes of albino mutant	Publication	02/01/22
PRJNA402017	Transcriptome of young fruits of CsFUL1 overexpression line	Publication	02/01/22
PRJNA540430	Transcriptome of fruit of sf2 mutant (short-fruit)	Publication	02/01/22
PRJNA541993	Transcriptome of fruit peel of an irregularly striped rind mutant	Publication	02/01/22
PRJNA685586	Leaf transcriptomes of multiple trichome (mt) mutant	Publication	02/01/22
PRJNA342056	Transcriptomes of CsIND-RNAi lines	Publication	02/01/22
PRJNA672817	Transcriptome profiling of micro-plant (mp) mutant		02/01/22
PRJNA428976	Transcriptomes of young ovaries in the round leaf mutant	Publication	02/01/22
PRJNA382994	Transcriptome profiling of mosaic (MSC) mitochondrial mutants	Publication	02/01/22
PRJNA765045	Transcriptome profiling of reciprocal hybrids	Publication	02/01/22
PRJNA428292	Transcriptomes of cucumber ovaries inhibited by dominant fruits	Publication	02/01/22
PRJNA431715	Transcriptomes of ovaries and pericarps from numerous-spine and few-spine inbred lines	Publication	02/01/22
PRJNA613672	Transcriptome profiling of ovary culture-induced embryogenesis	Publication	02/01/22
PRJDB6130	Hydrotropism-related gene expression in roots exposed to different gravitational conditions	Publication	02/01/22
PRJNA271595	Transcriptome profiling of root development	Publication	02/01/22
PRJNA319011	Transcriptome profiles of seed from fruit at different developmental stages		02/01/22
PRJNA359788	Transcriptomes of cucumber lines with different sex types	Publication	02/01/22
PRJNA827999	Transcriptome profiling of shoot apex in determinate/indeterminate growth genotypes		08/01/22

Melon (Cucumis melo)

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Project ID	Title	Publication	Date collected from SRA
PRJNA418901	Transcriptome responses to cold stress		02/01/22
PRJNA553119	Transcriptome responses to chilling	Publication	02/01/22
PRJNA371826	Transcriptome responses to Fe and Cu deficiency responses in wild type and fefe mutant	Publication	02/01/22
PRJNA589475	Seed transcriptomes in response to ABA and melatonin treatment	Publication	02/01/22
PRJNA603202	Transcriptome profiling of melon leaves in response to different environments	Publication	02/01/22
PRJNA296827	Transcriptome responses to salt stress	Publication	02/01/22
PRJNA726294	Transcriptome responses to waterlogging	Publication	02/01/22
PRJNA544826	Transcriptome responses to Phytophthora capsici	Publication	02/01/22
PRJNA681992	Transcriptome responses to gummy stem blight fungi		02/01/22
PRJNA842515	Transcriptome response to fusarium oxysporum	Publication	08/01/22
PRJNA476826	Transcriptome of seedling treated with melon aqueous extracts		02/01/22
PRJNA602136	Transcriptome profiling of melon leaves and roots in response to melon root exudates (mimic autotoxicity)	Publication	02/01/22
PRJNA733070	Transcriptome response to B. subtilis cells or the secondary metabolite fengycin		08/01/22
PRJNA358655	Transcriptome responses to powdery mildew disease cause by Podosphaera xanthii	Publication	02/01/22
PRJNA434538	Transcriptome responses to powdery mildew disease cause by Podosphaera xanthii	Publication	02/01/22
PRJNA544383	Transcriptome responses to powdery mildew disease cause by Podosphaera xanthii	Publication	02/01/22
PRJNA720761	Transcriptome response to Podosphaera xanthii (powdery mildew)		08/01/22
PRJNA791790	Transcriptome responses of melon leaves to powdery mildew		02/01/22
PRJNA780428	Transcriptome responses to Tomato leaf curl New Delhi virus (ToLCNDV)	Publication	02/01/22
PRJNA657708	Transcriptome profiling reveals the occurrence mechanism of bisexual flowers in melon	Publication	02/01/22
PRJNA286120	Transcriptome profiling of orange and green fruit flesh	Publication	02/01/22
PRJNA288543	Transcriptome profiling of yellow and white fruit rind	Publication	02/01/22
PRJNA300582	Transcriptome profiling of fruit development	Publication	02/01/22
PRJNA314069	Transcriptome profiling of fruit development	Publication	02/01/22
PRJNA381300	Transcriptome profiling of fruits and leaves	Publication	02/01/22
PRJNA509340	Transcriptome profiling of postharvested fruits	Publication	02/01/22
PRJNA543288	Transcriptome profiling of fruits	Publication	02/01/22
PRJNA590455	Transcriptomic profiling of non-climacteric 'Yellow' melon during ripening	Publication	02/01/22
PRJNA690191	Transcriptome profiling of fruit development	Publication	02/01/22
PRJNA729587	Transcriptomes of fruits from plants with ovaries treated with CPPU	Publication	02/01/22
PRJNA737338	Transcriptome profiling of leaves and fruit development	Publication	02/01/22
PRJNA796042	Transcriptome profiling of fruit development		02/01/22
PRJNA487974	Transcriptome profiling of fruits from non-grafted melon and melon plants grafted on Cucurbita moschata	Publication	02/01/22
PRJDB6414	Gene expression atlas of melon	Publication	02/01/22
PRJNA603204	Transcriptome profiling of different tissues	Publication	02/01/22
PRJNA803327	Transcriptomes of melon roots, stems, leaves, female flowers, and male flowers		02/01/22
SRP066337	Transcriptome profiling of different tissues	Publication	02/01/22
PRJNA748168	Leaf transcriptome of the cmlhp1ab double mutant	Publication	02/01/22
PRJNA784377	Transcriptomes of leaves of a natural chlorophyll-less mutant		02/01/22
PRJNA608205	Transcriptome profiling of internode elongation	Publication	02/01/22
PRJNA839169	Transcriptome profiling of stigma	Publication	08/01/22

Melon (Cucumis metuliferus)

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Project ID	Title	Publication	Date collected from SRA
PRJNA253074	Transcriptome responses to nematode		02/01/22

Monk fruit (Siraitia grosvenorii)

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Project ID	Title	Publication	Date collected from SRA
PRJEB23466	Transcriptome profiling of different tissues	Publication	02/01/22

Snake gourd (Trichosanthes anguina)

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Project ID	Title	Publication	Date collected from SRA
PRJNA319011	Transcriptome profiles of seed from fruit at different developmental stages		02/01/22

Sponge gourd (Luffa spp.)

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Project ID	Title	Publication	Date collected from SRA
PRJNA284862	Transcriptome profiling of fruits with different resistances to browning	Publication	02/01/22
PRJNA268703	Leaf transcriptome of ToLCNDV-resistant and sensitive lines of sponge gourd		02/01/22
PRJNA610991	Fruit transcriptome		02/01/22
PRJNA698253	Transcriptomes of mature fruits with different shapes		02/01/22
PRJNA810936	Fruit transcriptomes of bitter and non-bitter varieties	Publication	08/01/22
PRJNA732226	Transcriptome profiling of different tissues		08/01/22
PRJNA606857	Leaf transcriptome of the dwarf mutant WJ209	Publication	08/01/22
PRJNA390566	Seed transcriptome		02/01/22

Watermelon (Citrullus spp.)

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Project ID	Title	Publication	Date collected from SRA
PRJNA328189	Leaf transcriptome profiling in response to melatonin-mediated cold stress	Publication	02/01/22
PRJNA553072	Transcriptome responses of grafted plants to chilling	Publication	02/01/22
PRJNA326331	Transcriptome profiling of watermelon root in response to osmotic stress	Publication	02/01/22
PRJNA454040	Transcriptome responses of watermelon to drought stress	Publication	02/01/22
PRJNA604984	Watermelon leaf transcriptome response to drought stress	Publication	02/01/22
PRJNA770012	Transcriptome response of watermelon to osmotic stress	Publication	02/01/22
PRJNA209092	Root transcriptomes of two watermelon genotypes contrasting in K efficiency with or without K+ supply	Publication	02/01/22
PRJNA307279	Transcriptome profiles of grafted plants under Pi stress	Publication	02/01/22
PRJNA416203	Transcriptome profiling of fruit flesh of grafted watermelon under normal and low K treatment	Publication	02/01/22
PRJNA422970	Transcriptome responses of watermelon to N treatment	Publication	02/01/22
PRJNA769969	Transcriptome profiling of watermelon treated with nitric oxide under aluminum stress	Publication	02/01/22
PRJNA504354	Effect of high temperature on ovule swelling without fertilization		02/01/22
PRJNA609260	Watermelon leaf transcriptome response to salt stress	Publication	02/01/22
PRJNA846513	Transcriptome response to Acidovarax citrulli (bacterial fruit blotch)		08/01/22
PRJNA503589	Transcriptome of watermelon roots inoculated with Bacillus velezensis and FON	Publication	02/01/22
PRJNA641525	Transcriptome response of watermelon to Fusarium wilt under different cultivation cropping system	Publication	02/01/22
PRJNA783543	Root transcriptomes of watermelon pretreated with T. asperellum and inoculated with FON		02/01/22
PRJNA794199	Root transcriptome response of watermelon inoculated with FON	Publication	02/01/22
PRJNA488137	Transcriptome profiling of roots of wilt-sensitive watermelon with/without wheat straw	Publication	02/01/22
PRJNA389184	Transcriptome analysis of watermelon fruits inoculated with cucumber green mottle mosaic virus	Publication	02/01/22
PRJNA534308	Transcriptome responses of watermelon to CGMMV	Publication	02/01/22
PRJNA694461	Transcriptome profiling of watermelon treated with nutrients and viruses		02/01/22
PRJNA284484	Transcriptome profiles of floral buds and flowers of male sterile and fertile lines in watermelon	Publication	02/01/22
PRJNA221197	Transcriptome profiling of fruit development	Publication	02/01/22
PRJNA270773	Transcriptome profiles of fruit flesh of wild watermelon PI296341-FR	Publication	02/01/22
PRJNA407607	Transcriptome profiles of fruit flesh during fruit development	Publication	02/01/22
PRJNA476676	Transcriptome profiling of central flesh from three watermelon genotypes		02/01/22
PRJNA477364	Transcriptome profiling of central flesh from two watermelon genotypes	Publication	02/01/22
PRJNA520808	transcriptome sequencing of flesh during fruit development	Publication	02/01/22
PRJNA549842	Transcriptome profiling of fruit development	Publication	02/01/22
PRJNA587316	Transcriptome profiling of fruit development	Publication	02/01/22
PRJNA644468	Transcriptome profiling of fruit development	Publication	02/01/22
PRJNA682019	Transcriptome profiles of fruit flesh during fruit development	Publication	02/01/22
PRJNA703434	Transcriptome profiling of fruit development	Publication	02/01/22
PRJNA718123	Transcriptome profiling of fruit flesh development	Publication	08/01/22
PRJNA720347	Transcriptome profiling of wild and cultivated watermelon during fruit development	Publication	08/01/22
SRP012849	Transcriptome profiling of fruit development	Publication	02/01/22
PRJNA543725	Transcriptome profiling of fruit development of grafted and ungrafted watermelon	Publication	02/01/22
PRJNA549006	Fruit development transcriptome of the self-grafted watermelon and pumpkin grafted watermelon	Publication	02/01/22
PRJNA532463	Transcriptome profiling of various tissues at different fruit stages in grafted watermelon	Publication	02/01/22
PRJNA576654	Transcriptome changes in reciprocal grafts involving watermelon and bottle gourd	Publication	02/01/22
PRJNA721571	Comparative transcriptome analysis in homo- and hetero- grafted cucurbit seedlings	Publication	02/01/22
PRJNA661588	Effects of genome doubling in watermelon transcriptome	Publication	02/01/22
PRJNA676179	Transcriptome profiling of cordophanus watermelon	Publication	02/01/22
SRP012853	Phloem sap and vascular transcriptomes	Publication	02/01/22
PRJNA563969	Fruit flesh transcriptome of claga2 mutant	Publication	02/01/22
PRJNA564186	Fruit flesh transcriptome of clvst1 mutant	Publication	02/01/22
PRJNA319011	Transcriptome profiles of seed from fruit at different developmental stages		02/01/22
PRJNA549140	Transcriptomes of watermelon apical shoot with flower bud	Publication	02/01/22

Wax gourd (Benincasa hispida)

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Project ID	Title	Publication	Date collected from SRA
PRJNA526796	Transcriptome responses to drought stress	Publication	02/01/22
PRJNA514971	Transcriptome responses to heat stress	Publication	02/01/22
PRJNA438426	Transcriptome responses to waterlogging		08/01/22
SRP180414	Transcriptome responses to fusarium acid treatment	Publication	02/01/22
PRJNA576156	Transcriptome profiling of fruit development	Publication	02/01/22

List of RNA-Seq projects